1DLPA

Structural characterization of the native fetuin-binding protein scilla campanulata agglutinin (scafet): a novel two-domain lectin
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
235
structure length
233
Chain Sequence
NNILFGLSHEGSHPQTLHAAQSLELSSFRFTMQSDCNLVLFDSDVRVWASNTAGATGCRAVLQSDGLLVILTAQNTIRWSSGTKGSIGNYVLVLQPDRTVTIYGPGLWDSGTSNKGSVVVANNGNSILYSTNDNHPQTLHATQSLQLSPYRLSMETDCNLVLFDRDDRVWSTNTAGKGTGCRAVLQPNGRMDVLTNQNIAVWTSGNSRSAGRYVFVLQPDRNLAIYGGALWTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords LECTIN SCAFET PRECURSOR
publication title Structural characterisation of the native fetuin-binding protein Scilla campanulata agglutinin: a novel two-domain lectin.
pubmed doi rcsb
total genus 33
structure length 233
sequence length 235
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 1999-12-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.90.10.10 Mainly Beta Orthogonal Prism Agglutinin, subunit A Bulb-type lectin domain 1dlpA01
2.90.10.10 Mainly Beta Orthogonal Prism Agglutinin, subunit A Bulb-type lectin domain 1dlpA02
5T1XB 1KJ1A 1DLPA 4GC1A 3M7HA 4GC2A 3R0EA 5D9ZA 5T20A 3R0EB 1B2PA 4TKCA 5D9ZB 3M7JA 5T20B 5J76A 1BWUA 1MSAA 5J76B 2DPFA 1NIVA 1BWUP 1BWUQ 1KJ1D 1NPLA 1XD5A 5D5GA 1XD6A 3A0EA 3DZWA 5D5GB 4PDTA 3A0DA 3MEZA 1BWUD 2D04A 3MEZB 5T1XA 3A0CA 4H3OA 1JPCA 2D04B
chains in the Genus database with same CATH superfamily
5T1XB 1KJ1A 1DLPA 4GC1A 3M7HA 4OITA 4LE7A 4OIZA 4GC2A 3R0EA 5D9ZA 5T20A 3R0EB 1B2PA 4TKCA 5D9ZB 3M7JA 5T20B 4LEDA 1BWUA 5J76A 1MSAA 5J76B 2DPFA 1NIVA 1BWUP 1BWUQ 1KJ1D 1NPLA 1XD5A 5D5GA 1XD6A 3A0EA 3DZWA 5D5GB 4PDTA 3A0DA 3MEZA 1BWUD 2D04A 3MEZB 4OKCA 5T1XA 3A0CA 4LEAA 4H3OA 1JPCA 2D04B
chains in the Genus database with same CATH topology
5T1XB 1KJ1A 1DLPA 4GC1A 3M7HA 4GC2A 3R0EA 5D9ZA 5T20A 3R0EB 1B2PA 4TKCA 5D9ZB 3M7JA 5T20B 5J76A 1BWUA 1MSAA 5J76B 2DPFA 1NIVA 1BWUP 1BWUQ 1KJ1D 1NPLA 1XD5A 5D5GA 1XD6A 3A0EA 3DZWA 5D5GB 4PDTA 3A0DA 3MEZA 1BWUD 2D04A 3MEZB 5T1XA 3A0CA 4H3OA 1JPCA 2D04B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5T1X B;  1KJ1 A;  1DLP A;  4GC1 A;  3M7H A;  4GC2 A;  3R0E A;  5D9Z A;  5T20 A;  3R0E B;  1B2P A;  4TKC A;  5D9Z B;  3M7J A;  5T20 B;  5J76 A;  1BWU A;  1MSA A;  5J76 B;  2DPF A;  1NIV A;  1BWU P;  1BWU Q;  1KJ1 D;  1NPL A;  1XD5 A;  5D5G A;  1XD6 A;  3A0E A;  3DZW A;  5D5G B;  4PDT A;  3A0D A;  3MEZ A;  1BWU D;  2D04 A;  3MEZ B;  5T1X A;  3A0C A;  4H3O A;  1JPC A;  2D04 B; 
#chains in the Genus database with same CATH topology
 5T1X B;  1KJ1 A;  1DLP A;  4GC1 A;  3M7H A;  4OIT A;  4LE7 A;  4OIZ A;  4GC2 A;  3R0E A;  5D9Z A;  5T20 A;  3R0E B;  1B2P A;  4TKC A;  5D9Z B;  3M7J A;  5T20 B;  4LED A;  1BWU A;  5J76 A;  1MSA A;  5J76 B;  2DPF A;  1NIV A;  1BWU P;  1BWU Q;  1KJ1 D;  1NPL A;  1XD5 A;  5D5G A;  1XD6 A;  3A0E A;  3DZW A;  5D5G B;  4PDT A;  3A0D A;  3MEZ A;  1BWU D;  2D04 A;  3MEZ B;  4OKC A;  5T1X A;  3A0C A;  4LEA A;  4H3O A;  1JPC A;  2D04 B; 
#chains in the Genus database with same CATH homology
 5T1X B;  1KJ1 A;  1DLP A;  4GC1 A;  3M7H A;  4GC2 A;  3R0E A;  5D9Z A;  5T20 A;  3R0E B;  1B2P A;  4TKC A;  5D9Z B;  3M7J A;  5T20 B;  5J76 A;  1BWU A;  1MSA A;  5J76 B;  2DPF A;  1NIV A;  1BWU P;  1BWU Q;  1KJ1 D;  1NPL A;  1XD5 A;  5D5G A;  1XD6 A;  3A0E A;  3DZW A;  5D5G B;  4PDT A;  3A0D A;  3MEZ A;  1BWU D;  2D04 A;  3MEZ B;  5T1X A;  3A0C A;  4H3O A;  1JPC A;  2D04 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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