1DNYA

Solution structure of pcp, a prototype for the peptidyl carrier domains of modular peptide synthetases
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
76
structure length
76
Chain Sequence
YVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVAT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords NON-RIBOSOMAL PEPTIDE SYNTHETASE PEPTIDYL CARRIER PROTEIN
publication title Solution structure of PCP, a prototype for the peptidyl carrier domains of modular peptide synthetases.
pubmed doi rcsb
source organism Brevibacillus brevis
total genus 19
structure length 76
sequence length 76
ec nomenclature
pdb deposition date 1999-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 1dnyA00
2KGAA 1NQ4A 2FHSC 1HY8A 2K94A 4BPHA 2MR7A 2KWLA 2MD9A 2KGEA 4HKGA 5KP6B 2LMLA 2VSQA 2CGQA 3GZLA 2JU2A 2XZ0D 2ROQA 2X2BA 3CE7A 4NEOA 4CA3A 2LIWA 2N6ZA 1AF8A 2KOPA 4MRTC 4PXHB 3GZMA 2CQ8A 2LKIA 2DNWA 1F80D 4IZ6A 5EJDA 2FQ0A 2JQ4A 4R0MA 5HV8A 2FQ1A 2CNRA 2K0YA 2LIUA 2KORA 2GDXA 3RG2A 4DG9A 3EJEA 2LPKA 2N98A 1L0IA 2FQ2A 3EJBA 4H2YC 2KG8A 3LMOA 4BPFA 2FVEA 1T8KA 2K92A 3NY7B 2KG9A 2KOOA 2L0QA 2FAEA 2GDWA 2QNWA 1DNYA 2GDYA 4PWVB 2KW2A 2L4BA 2AFDA 2KGCA 2KG6A 2L22A 2PNGA 2KOSA 2FACA 2L9FA 2FVAA 1VKUA 2LTEA 1OR5A 2N5HA 2MVUA 2KOQA 4H2WC 2LOLA 5KP7B 2M5RA 2MR8A 2JGPA 2EHSA 2K93A 2AVAA 1KLPA 2EHTA 2N5IA 2JU1A 4BPGA 1ACPA 2FVFA 2AF8A 2K0XA 2N50A 2N6YA 2FADA 1HQBA 2K2QA 2CG5B 5CZDB 5HVCA 2KR5A 2LL8A 3EJDA 2KGDA 2MY5A 1X3OA 2MF4A 2AFEA 5KP8B 4H2XC 2XZ1C 1L0HA 2MVVA 1DV5A
chains in the Genus database with same CATH superfamily
2KGAA 2MR7A 2KWLA 3CC7P 1IUQA 2KGEA 4GR2A 1RO2A 1E6JP 3G28A 2XXMA 2CGQA 3GZLA 1YJWP 1K30A 2XZ0D 3CE7A 1VQKP 3NTEA 4NEOA 3CCMP 3VRLC 2N6ZA 1AF8A 4PXHB 2K0DX 2DNWA 2CWOA 2Z45A 5HV8A 1JJ2O 2LIUA 2EIAA 4PH0A 2GDXA 1Q82Q 3CCSP 2DGYA 1YI2P 1UNKA 2ONTA 2N98A 1W2BO 3CC4P 2JAZA 2BHVA 1M6EX 2Z46A 5HGMA 1K8AQ 4XFZA 2JYGA 1D1DA 2FVEA 2GZEA 2KG9A 1EMVA 3G6EP 2GDWA 2GDYA 4PWVB 3DS3A 3G29A 2BUOA 2L4BA 2AFDA 3WBHA 2PNGA 1M1KQ 2FACA 3CD6P 4WYMA 2LTEA 2PENA 3G4SP 1EOQA 2N5HA 2JGPA 3OW2O 4U0EA 3I56P 3CCEP 2PEKA 3HYBA 4PH1A 2PEQA 2M8LA 3E2DA 4COCA 2N6YA 2VLOA 3I55P 2ERHA 2AFEA 5KP8B 4XRQA 1VQ6P 2FHSC 1QVFO 2VLQA 1HY8A 2K94A 4QKOA 1BXIA 3DS2A 4HKGA 5KP6B 3H0DA 2JU2A 2X2BA 4CA3A 2LIWA 3HZQA 3G26A 4MRTC 3GJNA 2CQ8A 2EFJA 2GZGA 1GXGA 5EJDA 4R0MA 2JQ4A 3CCVP 3U43A 3DS4A 5F2KA 1A43A 1ZMBA 3RG2A 2Z44A 2NO8A 5I4TG 2JB0A 3DS5A 3MGEA 1Z6MA 1KC8Q 2KG8A 3LMOA 3B5IA 1T8KA 2K92A 2P9XA 1VQ5P 1VQ8P 2KOOA 4F37A 2L0QA 2FAEA 3G1GA 2GYKA 2KW2A 1VQNP 3P05A 2QEXP 4U0CA 2FVAA 1OR5A 4IPYA 2LOLA 2MR8A 5F2OA 2E1MA 2EHSA 1KLPA 3DTJA 2EHTA 2JU1A 4BPGA 1ACPA 1AYIA 2K0XA 3DPHA 1K9MQ 2FADA 3DS1A 5HGOA 2PY8A 5CZDB 2JYLA 5HVCA 2KR5A 2LL8A 2MY5A 7CEIA 4H2XC 2XZ1C 1DV5A 1BAJA 2M8PA 5BS2A 1Q86Q 4XFXA 1VQ9P 4BPHA 2MD9A 2WPTA 5DCKA 1N8RQ 3CMEP 1Q81Q 1K73Q 1RNIA 4IZ6A 2FQ0A 4XROA 2K0YA 1EIAA 3GKLC 3RG6C 1VQLP 3EJEA 3CCQP 2LPKA 1FR2A 1L0IA 2FQ2A 3EJBA 5HGLA 3H47A 4H2YC 4BPFA 5JPAA 4XFYA 1E0HA 3NY7B 4M0IA 1RO0A 2QNWA 1VQ4P 2XT1A 2KGCA 1GXHA 2KOSA 2OARA 3CC2P 2JBGA 1VKUA 2MVUA 2KOQA 3Q20A 5KP7B 4U0DA 2M5RA 1CEIA 2K93A 2EG5A 1M6NA 1AUMA 2FVFA 1IMPA 2N50A 2OTJP 3G71P 3CCLP 1HQBA 2K2QA 3H4EA 1QRJA 2CG5B 4QNBA 1S72P 2L6EA 5F2NA 2MVVA 1MZ8A 1NQ4A 2GZFA 4U0BA 3LRYA 2LMLA 2VSQA 5EW5E 5HGNA 2ROQA 2OTLP 2KOPA 5BS1A 4UHPB 3GZMA 2LKIA 1KD1Q 4U0AA 3CMAP 1F80D 1UJZA 3G0VA 1YJNP 3CCJP 1GPJA 2FQ1A 2CNRA 2VLNA 2KORA 2PEIA 2PEMA 4DG9A 1QVGO 1YIJP 3B4QA 3CCUP 1ZNVA 2GZIA 1M90Q 2LF4A 1VQOP 1M74A 2GZJA 1A8OA 3G1IA 1DNYA 2M8NA 2KG6A 2L22A 1VQPP 1YHQP 1VQ7P 3CPWO 4GR6A 2L9FA 2PEJA 3G21A 3M1MA 1Q7YQ 4H2WC 2VLPA 2JO0A 2AVAA 1VQMP 1VHNA 2XV6A 2KODA 4U0FA 2N5IA 3CCRP 2PEOA 2AF8A 3DS0A 1YITP 2QA4P 1IMQA 1NJIQ 1YJ9P 4COPA 1KQSO 3EJDA 2KGDA 1X3OA 2MF4A 1L0HA 2K5XA 3CXCO
chains in the Genus database with same CATH topology
2KGAA 1NQ4A 2FHSC 1HY8A 2K94A 4BPHA 2MR7A 2KWLA 2MD9A 2KGEA 4HKGA 5KP6B 2LMLA 2VSQA 2CGQA 3GZLA 2JU2A 2XZ0D 2ROQA 2X2BA 3CE7A 4NEOA 4CA3A 2LIWA 2N6ZA 1AF8A 2KOPA 4MRTC 4PXHB 3GZMA 2CQ8A 2LKIA 2DNWA 1F80D 4IZ6A 5EJDA 2FQ0A 2JQ4A 4R0MA 5HV8A 2FQ1A 2CNRA 2K0YA 2LIUA 2KORA 2GDXA 3RG2A 4DG9A 3EJEA 2LPKA 2N98A 1L0IA 2FQ2A 3EJBA 4H2YC 2KG8A 3LMOA 4BPFA 2FVEA 1T8KA 2K92A 3NY7B 2KG9A 2KOOA 2L0QA 2FAEA 2GDWA 2QNWA 1DNYA 2GDYA 4PWVB 2KW2A 2L4BA 2AFDA 2KGCA 2KG6A 2L22A 2PNGA 2KOSA 2FACA 2L9FA 2FVAA 1VKUA 2LTEA 1OR5A 2N5HA 2MVUA 2KOQA 4H2WC 2LOLA 5KP7B 2M5RA 2MR8A 2JGPA 2EHSA 2K93A 2AVAA 1KLPA 2EHTA 2N5IA 2JU1A 4BPGA 1ACPA 2FVFA 2AF8A 2K0XA 2N50A 2N6YA 2FADA 1HQBA 2K2QA 2CG5B 5CZDB 5HVCA 2KR5A 2LL8A 3EJDA 2KGDA 2MY5A 1X3OA 2MF4A 2AFEA 5KP8B 4H2XC 2XZ1C 1L0HA 2MVVA 1DV5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KGA A;  1NQ4 A;  2FHS C;  1HY8 A;  2K94 A;  4BPH A;  2MR7 A;  2KWL A;  2MD9 A;  2KGE A;  4HKG A;  5KP6 B;  2LML A;  2VSQ A;  2CGQ A;  3GZL A;  2JU2 A;  2XZ0 D;  2ROQ A;  2X2B A;  3CE7 A;  4NEO A;  4CA3 A;  2LIW A;  2N6Z A;  1AF8 A;  2KOP A;  4MRT C;  4PXH B;  3GZM A;  2CQ8 A;  2LKI A;  2DNW A;  1F80 D;  4IZ6 A;  5EJD A;  2FQ0 A;  2JQ4 A;  4R0M A;  5HV8 A;  2FQ1 A;  2CNR A;  2K0Y A;  2LIU A;  2KOR A;  2GDX A;  3RG2 A;  4DG9 A;  3EJE A;  2LPK A;  2N98 A;  1L0I A;  2FQ2 A;  3EJB A;  4H2Y C;  2KG8 A;  3LMO A;  4BPF A;  2FVE A;  1T8K A;  2K92 A;  3NY7 B;  2KG9 A;  2KOO A;  2L0Q A;  2FAE A;  2GDW A;  2QNW A;  1DNY A;  2GDY A;  4PWV B;  2KW2 A;  2L4B A;  2AFD A;  2KGC A;  2KG6 A;  2L22 A;  2PNG A;  2KOS A;  2FAC A;  2L9F A;  2FVA A;  1VKU A;  2LTE A;  1OR5 A;  2N5H A;  2MVU A;  2KOQ A;  4H2W C;  2LOL A;  5KP7 B;  2M5R A;  2MR8 A;  2JGP A;  2EHS A;  2K93 A;  2AVA A;  1KLP A;  2EHT A;  2N5I A;  2JU1 A;  4BPG A;  1ACP A;  2FVF A;  2AF8 A;  2K0X A;  2N50 A;  2N6Y A;  2FAD A;  1HQB A;  2K2Q A;  2CG5 B;  5CZD B;  5HVC A;  2KR5 A;  2LL8 A;  3EJD A;  2KGD A;  2MY5 A;  1X3O A;  2MF4 A;  2AFE A;  5KP8 B;  4H2X C;  2XZ1 C;  1L0H A;  2MVV A;  1DV5 A; 
#chains in the Genus database with same CATH topology
 2KGA A;  2MR7 A;  2KWL A;  3CC7 P;  1IUQ A;  2KGE A;  4GR2 A;  1RO2 A;  1E6J P;  3G28 A;  2XXM A;  2CGQ A;  3GZL A;  1YJW P;  1K30 A;  2XZ0 D;  3CE7 A;  1VQK P;  3NTE A;  4NEO A;  3CCM P;  3VRL C;  2N6Z A;  1AF8 A;  4PXH B;  2K0D X;  2DNW A;  2CWO A;  2Z45 A;  5HV8 A;  1JJ2 O;  2LIU A;  2EIA A;  4PH0 A;  2GDX A;  1Q82 Q;  3CCS P;  2DGY A;  1YI2 P;  1UNK A;  2ONT A;  2N98 A;  1W2B O;  3CC4 P;  2JAZ A;  2BHV A;  1M6E X;  2Z46 A;  5HGM A;  1K8A Q;  4XFZ A;  2JYG A;  1D1D A;  2FVE A;  2GZE A;  2KG9 A;  1EMV A;  3G6E P;  2GDW A;  2GDY A;  4PWV B;  3DS3 A;  3G29 A;  2BUO A;  2L4B A;  2AFD A;  3WBH A;  2PNG A;  1M1K Q;  2FAC A;  3CD6 P;  4WYM A;  2LTE A;  2PEN A;  3G4S P;  1EOQ A;  2N5H A;  2JGP A;  3OW2 O;  4U0E A;  3I56 P;  3CCE P;  2PEK A;  3HYB A;  4PH1 A;  2PEQ A;  2M8L A;  3E2D A;  4COC A;  2N6Y A;  2VLO A;  3I55 P;  2ERH A;  2AFE A;  5KP8 B;  4XRQ A;  1VQ6 P;  2FHS C;  1QVF O;  2VLQ A;  1HY8 A;  2K94 A;  4QKO A;  1BXI A;  3DS2 A;  4HKG A;  5KP6 B;  3H0D A;  2JU2 A;  2X2B A;  4CA3 A;  2LIW A;  3HZQ A;  3G26 A;  4MRT C;  3GJN A;  2CQ8 A;  2EFJ A;  2GZG A;  1GXG A;  5EJD A;  4R0M A;  2JQ4 A;  3CCV P;  3U43 A;  3DS4 A;  5F2K A;  1A43 A;  1ZMB A;  3RG2 A;  2Z44 A;  2NO8 A;  5I4T G;  2JB0 A;  3DS5 A;  3MGE A;  1Z6M A;  1KC8 Q;  2KG8 A;  3LMO A;  3B5I A;  1T8K A;  2K92 A;  2P9X A;  1VQ5 P;  1VQ8 P;  2KOO A;  4F37 A;  2L0Q A;  2FAE A;  3G1G A;  2GYK A;  2KW2 A;  1VQN P;  3P05 A;  2QEX P;  4U0C A;  2FVA A;  1OR5 A;  4IPY A;  2LOL A;  2MR8 A;  5F2O A;  2E1M A;  2EHS A;  1KLP A;  3DTJ A;  2EHT A;  2JU1 A;  4BPG A;  1ACP A;  1AYI A;  2K0X A;  3DPH A;  1K9M Q;  2FAD A;  3DS1 A;  5HGO A;  2PY8 A;  5CZD B;  2JYL A;  5HVC A;  2KR5 A;  2LL8 A;  2MY5 A;  7CEI A;  4H2X C;  2XZ1 C;  1DV5 A;  1BAJ A;  2M8P A;  5BS2 A;  1Q86 Q;  4XFX A;  1VQ9 P;  4BPH A;  2MD9 A;  2WPT A;  5DCK A;  1N8R Q;  3CME P;  1Q81 Q;  1K73 Q;  1RNI A;  4IZ6 A;  2FQ0 A;  4XRO A;  2K0Y A;  1EIA A;  3GKL C;  3RG6 C;  1VQL P;  3EJE A;  3CCQ P;  2LPK A;  1FR2 A;  1L0I A;  2FQ2 A;  3EJB A;  5HGL A;  3H47 A;  4H2Y C;  4BPF A;  5JPA A;  4XFY A;  1E0H A;  3NY7 B;  4M0I A;  1RO0 A;  2QNW A;  1VQ4 P;  2XT1 A;  2KGC A;  1GXH A;  2KOS A;  2OAR A;  3CC2 P;  2JBG A;  1VKU A;  2MVU A;  2KOQ A;  3Q20 A;  5KP7 B;  4U0D A;  2M5R A;  1CEI A;  2K93 A;  2EG5 A;  1M6N A;  1AUM A;  2FVF A;  1IMP A;  2N50 A;  2OTJ P;  3G71 P;  3CCL P;  1HQB A;  2K2Q A;  3H4E A;  1QRJ A;  2CG5 B;  4QNB A;  1S72 P;  2L6E A;  5F2N A;  2MVV A;  1MZ8 A;  1NQ4 A;  2GZF A;  4U0B A;  3LRY A;  2LML A;  2VSQ A;  5EW5 E;  5HGN A;  2ROQ A;  2OTL P;  2KOP A;  5BS1 A;  4UHP B;  3GZM A;  2LKI A;  1KD1 Q;  4U0A A;  3CMA P;  1F80 D;  1UJZ A;  3G0V A;  1YJN P;  3CCJ P;  1GPJ A;  2FQ1 A;  2CNR A;  2VLN A;  2KOR A;  2PEI A;  2PEM A;  4DG9 A;  1QVG O;  1YIJ P;  3B4Q A;  3CCU P;  1ZNV A;  2GZI A;  1M90 Q;  2LF4 A;  1VQO P;  1M74 A;  2GZJ A;  1A8O A;  3G1I A;  1DNY A;  2M8N A;  2KG6 A;  2L22 A;  1VQP P;  1YHQ P;  1VQ7 P;  3CPW O;  4GR6 A;  2L9F A;  2PEJ A;  3G21 A;  3M1M A;  1Q7Y Q;  4H2W C;  2VLP A;  2JO0 A;  2AVA A;  1VQM P;  1VHN A;  2XV6 A;  2KOD A;  4U0F A;  2N5I A;  3CCR P;  2PEO A;  2AF8 A;  3DS0 A;  1YIT P;  2QA4 P;  1IMQ A;  1NJI Q;  1YJ9 P;  4COP A;  1KQS O;  3EJD A;  2KGD A;  1X3O A;  2MF4 A;  1L0H A;  2K5X A;  3CXC O; 
#chains in the Genus database with same CATH homology
 2KGA A;  1NQ4 A;  2FHS C;  1HY8 A;  2K94 A;  4BPH A;  2MR7 A;  2KWL A;  2MD9 A;  2KGE A;  4HKG A;  5KP6 B;  2LML A;  2VSQ A;  2CGQ A;  3GZL A;  2JU2 A;  2XZ0 D;  2ROQ A;  2X2B A;  3CE7 A;  4NEO A;  4CA3 A;  2LIW A;  2N6Z A;  1AF8 A;  2KOP A;  4MRT C;  4PXH B;  3GZM A;  2CQ8 A;  2LKI A;  2DNW A;  1F80 D;  4IZ6 A;  5EJD A;  2FQ0 A;  2JQ4 A;  4R0M A;  5HV8 A;  2FQ1 A;  2CNR A;  2K0Y A;  2LIU A;  2KOR A;  2GDX A;  3RG2 A;  4DG9 A;  3EJE A;  2LPK A;  2N98 A;  1L0I A;  2FQ2 A;  3EJB A;  4H2Y C;  2KG8 A;  3LMO A;  4BPF A;  2FVE A;  1T8K A;  2K92 A;  3NY7 B;  2KG9 A;  2KOO A;  2L0Q A;  2FAE A;  2GDW A;  2QNW A;  1DNY A;  2GDY A;  4PWV B;  2KW2 A;  2L4B A;  2AFD A;  2KGC A;  2KG6 A;  2L22 A;  2PNG A;  2KOS A;  2FAC A;  2L9F A;  2FVA A;  1VKU A;  2LTE A;  1OR5 A;  2N5H A;  2MVU A;  2KOQ A;  4H2W C;  2LOL A;  5KP7 B;  2M5R A;  2MR8 A;  2JGP A;  2EHS A;  2K93 A;  2AVA A;  1KLP A;  2EHT A;  2N5I A;  2JU1 A;  4BPG A;  1ACP A;  2FVF A;  2AF8 A;  2K0X A;  2N50 A;  2N6Y A;  2FAD A;  1HQB A;  2K2Q A;  2CG5 B;  5CZD B;  5HVC A;  2KR5 A;  2LL8 A;  3EJD A;  2KGD A;  2MY5 A;  1X3O A;  2MF4 A;  2AFE A;  5KP8 B;  4H2X C;  2XZ1 C;  1L0H A;  2MVV A;  1DV5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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