1DRSA

Three-dimensional structure of the rgd-containing neurotoxin homologue, dendroaspin
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
59
structure length
59
Chain Sequence
RICYNHLGTKPPTTETCQEDSCYKNIWTFDNIIRRGCGCFTPRGDMPGPYCCESDKCNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Three-dimensional structure of the RGD-containing neurotoxin homologue dendroaspin.
pubmed doi rcsb
molecule tags Cell adhesion protein
source organism Dendroaspis jamesoni kaimosae
molecule keywords DENDROASPIN
total genus 12
structure length 59
sequence length 59
ec nomenclature
pdb deposition date 1994-09-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1drsA00
4RUDA 1KU6B 1VB0A 1FSCA 1NXBA 4BIKB 1ERGA 4ZQYA 1RL5A 1B41B 2H7ZA 1HAAA 3KFDI 4QTIU 2J8BA 1CDTA 1KBSA 2CRTA 1TXBA 1IKCA 1CDSA 2H8UA 1FFJA 1ONJA 5EBXA 1CB9A 1ERAA 2JVEA 1CXOA 1I02A 1W6BA 1NTXA 1TFSA 4OM4A 1HAJA 1UG4A 1KC4A 1LXGA 1KL8A 2CRSA 1M9ZA 1ZADA 2H62D 1RGJA 2OFSA 2H7ZB 2FD6U 2NBTA 1IDGA 1BTEA 2LA1A 2MJ0A 2ERAA 1QKEA 1NYUA 1S4YA 5DO6A 1PLOA 1TGXA 2H64C 2GOOB 2PJYB 2H5FA 3EBXA 3U73U 4XJJA 1CVOA 1IQ9A 2X8BB 3PLCA 2QJBC 3NEQA 4P7UA 1HOYA 1JBDA 1XT3A 2UX2A 3LAQU 2H62C 2CTXA 2CCXA 1CTXA 1LJZA 1CREA 3VTSA 1COEA 1KFHA 1KS6A 1MAHF 2MUPA 2ABXA 2K3GA 1ES7B 3NDSA 3U74U 2BHIA 2L5SA 2MJYA 1G6MA 4EY8B 2MFAA 2HLQA 1LX5B 4HQPF 1FASA 1FSSB 1F94A 5DU1A 2HLRA 2JQPA 2MUOA 1V6PA 3FEVA 1MR6A 1KXIA 1H0JA 1QM7A 4AEAA 1IJCA 1CDRA 2N99A 5IMTD 4UY2C 3ERAA 2LCRA 1CCQA 1REWC 1CDQA 1IK8A 2GOOC 1CODA 2PJYC 1TXAA 2UWRA 4FAOC 1NYSA 1NEAA 4IYEA 3QB4B 2MJ4A 1LSIA 2MHYA 3BT2U 3NH7A 2VLWA 4FAOE 1DRSA 1NORA 1YWHA 1IDHA 3EVSC 3BT1U 1JE9A 1FF4A 4LFTA 1HC9A 1IDLA 2I9BE 1KTZB 1NTNA 1CRFA 2L03A 1FRAA 1CXNA 1CHVS 2H64B 4OM5A 1QKDA 2BTXA 6EBXA 1ABTA 1LXHA 4BDTB 1HC9B 1L4WA 2QJ9C 1JGKA 1KBTA 3HH7A 1F8UB 1IDIA 2QC1A 4DO8A 2QJAC 2CDXA 3KFDE 1BXPA 5IMYC 5DZ5A 1KBAA
chains in the Genus database with same CATH superfamily
4RUDA 1KU6B 1VB0A 1FSCA 1NXBA 4BIKB 1ERGA 4ZQYA 1RL5A 1B41B 2H7ZA 1HAAA 3KFDI 4QTIU 2J8BA 1CDTA 1KBSA 2CRTA 1TXBA 1IKCA 1CDSA 2H8UA 1FFJA 1ONJA 5EBXA 1CB9A 1ERAA 2JVEA 1CXOA 1I02A 1W6BA 1NTXA 1TFSA 4OM4A 1HAJA 1UG4A 1KC4A 1LXGA 1KL8A 2CRSA 1M9ZA 1ZADA 2H62D 1RGJA 2OFSA 2H7ZB 2FD6U 2NBTA 1IDGA 1BTEA 2LA1A 2MJ0A 2ERAA 1QKEA 1NYUA 1S4YA 5DO6A 1PLOA 1TGXA 2H64C 2GOOB 2PJYB 2H5FA 3EBXA 3U73U 4XJJA 1CVOA 1IQ9A 2X8BB 3PLCA 2QJBC 3NEQA 4P7UA 1HOYA 1JBDA 1XT3A 2UX2A 3LAQU 2H62C 2CTXA 2CCXA 1CTXA 1LJZA 1CREA 3VTSA 1COEA 1KFHA 1KS6A 1MAHF 2MUPA 2ABXA 2K3GA 1ES7B 3NDSA 3U74U 2BHIA 2L5SA 2MJYA 1G6MA 4EY8B 2MFAA 2HLQA 1LX5B 4HQPF 1FASA 1FSSB 1F94A 5DU1A 2HLRA 2JQPA 2MUOA 1V6PA 3FEVA 1MR6A 1KXIA 1H0JA 1QM7A 4AEAA 1IJCA 1CDRA 2N99A 5IMTD 4UY2C 3ERAA 2LCRA 1CCQA 1REWC 1CDQA 1IK8A 2GOOC 1CODA 2PJYC 1TXAA 2UWRA 4FAOC 1NYSA 1NEAA 4IYEA 3QB4B 2MJ4A 1LSIA 2MHYA 3BT2U 3NH7A 2VLWA 4KSNA 4FAOE 1DRSA 1NORA 1YWHA 1IDHA 3EVSC 3BT1U 1JE9A 1FF4A 4LFTA 1HC9A 1IDLA 2I9BE 1KTZB 1NTNA 1CRFA 2L03A 1FRAA 1CXNA 1CHVS 2H64B 4OM5A 1QKDA 2BTXA 6EBXA 1ABTA 1LXHA 4BDTB 1HC9B 1L4WA 2QJ9C 1JGKA 1KBTA 3HH7A 1F8UB 1IDIA 2QC1A 4DO8A 2QJAC 2CDXA 3KFDE 1BXPA 5IMYC 5DZ5A 1KBAA
chains in the Genus database with same CATH topology
4RUDA 1KU6B 1VB0A 1FSCA 1NXBA 4BIKB 1ERGA 4ZQYA 1RL5A 1B41B 2H7ZA 1HAAA 3KFDI 4QTIU 2J8BA 1CDTA 1KBSA 2CRTA 1TXBA 1IKCA 1CDSA 2H8UA 1FFJA 1ONJA 5EBXA 1CB9A 1ERAA 2JVEA 1CXOA 1I02A 1W6BA 1NTXA 1TFSA 4OM4A 1HAJA 1UG4A 1KC4A 1LXGA 1KL8A 2CRSA 1M9ZA 1ZADA 2H62D 1RGJA 2OFSA 2H7ZB 2FD6U 2NBTA 1IDGA 1BTEA 2LA1A 2MJ0A 2ERAA 1QKEA 1NYUA 1S4YA 5DO6A 1PLOA 1TGXA 2H64C 2GOOB 2PJYB 2H5FA 3EBXA 3U73U 4XJJA 1CVOA 1IQ9A 2X8BB 3PLCA 2QJBC 3NEQA 4P7UA 1HOYA 1JBDA 1XT3A 2UX2A 3LAQU 2H62C 2CTXA 2CCXA 1CTXA 1LJZA 1CREA 3VTSA 1COEA 1KFHA 1KS6A 1MAHF 2MUPA 2ABXA 2K3GA 1ES7B 3NDSA 3U74U 2BHIA 2L5SA 2MJYA 1G6MA 4EY8B 2MFAA 2HLQA 1LX5B 4HQPF 1FASA 1FSSB 1F94A 5DU1A 2HLRA 2JQPA 2MUOA 1V6PA 3FEVA 1MR6A 1KXIA 1H0JA 1QM7A 4AEAA 1IJCA 1CDRA 2N99A 5IMTD 4UY2C 3ERAA 2LCRA 1CCQA 1REWC 1CDQA 1IK8A 2GOOC 1CODA 2PJYC 1TXAA 2UWRA 4FAOC 1NYSA 1NEAA 4IYEA 3QB4B 2MJ4A 1LSIA 2MHYA 3BT2U 3NH7A 2VLWA 4KSNA 4FAOE 1DRSA 1NORA 1YWHA 1IDHA 3EVSC 3BT1U 1JE9A 1FF4A 4LFTA 1HC9A 1IDLA 2I9BE 1KTZB 1NTNA 1CRFA 2L03A 1FRAA 1CXNA 1CHVS 2H64B 4OM5A 1QKDA 2BTXA 6EBXA 1ABTA 1LXHA 4BDTB 1HC9B 1L4WA 2QJ9C 1JGKA 1KBTA 3HH7A 1F8UB 1IDIA 2QC1A 4DO8A 2QJAC 2CDXA 3KFDE 1BXPA 5IMYC 5DZ5A 1KBAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RUD A;  1KU6 B;  1VB0 A;  1FSC A;  1NXB A;  4BIK B;  1ERG A;  4ZQY A;  1RL5 A;  1B41 B;  2H7Z A;  1HAA A;  3KFD I;  4QTI U;  2J8B A;  1CDT A;  1KBS A;  2CRT A;  1TXB A;  1IKC A;  1CDS A;  2H8U A;  1FFJ A;  1ONJ A;  5EBX A;  1CB9 A;  1ERA A;  2JVE A;  1CXO A;  1I02 A;  1W6B A;  1NTX A;  1TFS A;  4OM4 A;  1HAJ A;  1UG4 A;  1KC4 A;  1LXG A;  1KL8 A;  2CRS A;  1M9Z A;  1ZAD A;  2H62 D;  1RGJ A;  2OFS A;  2H7Z B;  2FD6 U;  2NBT A;  1IDG A;  1BTE A;  2LA1 A;  2MJ0 A;  2ERA A;  1QKE A;  1NYU A;  1S4Y A;  5DO6 A;  1PLO A;  1TGX A;  2H64 C;  2GOO B;  2PJY B;  2H5F A;  3EBX A;  3U73 U;  4XJJ A;  1CVO A;  1IQ9 A;  2X8B B;  3PLC A;  2QJB C;  3NEQ A;  4P7U A;  1HOY A;  1JBD A;  1XT3 A;  2UX2 A;  3LAQ U;  2H62 C;  2CTX A;  2CCX A;  1CTX A;  1LJZ A;  1CRE A;  3VTS A;  1COE A;  1KFH A;  1KS6 A;  1MAH F;  2MUP A;  2ABX A;  2K3G A;  1ES7 B;  3NDS A;  3U74 U;  2BHI A;  2L5S A;  2MJY A;  1G6M A;  4EY8 B;  2MFA A;  2HLQ A;  1LX5 B;  4HQP F;  1FAS A;  1FSS B;  1F94 A;  5DU1 A;  2HLR A;  2JQP A;  2MUO A;  1V6P A;  3FEV A;  1MR6 A;  1KXI A;  1H0J A;  1QM7 A;  4AEA A;  1IJC A;  1CDR A;  2N99 A;  5IMT D;  4UY2 C;  3ERA A;  2LCR A;  1CCQ A;  1REW C;  1CDQ A;  1IK8 A;  2GOO C;  1COD A;  2PJY C;  1TXA A;  2UWR A;  4FAO C;  1NYS A;  1NEA A;  4IYE A;  3QB4 B;  2MJ4 A;  1LSI A;  2MHY A;  3BT2 U;  3NH7 A;  2VLW A;  4FAO E;  1DRS A;  1NOR A;  1YWH A;  1IDH A;  3EVS C;  3BT1 U;  1JE9 A;  1FF4 A;  4LFT A;  1HC9 A;  1IDL A;  2I9B E;  1KTZ B;  1NTN A;  1CRF A;  2L03 A;  1FRA A;  1CXN A;  1CHV S;  2H64 B;  4OM5 A;  1QKD A;  2BTX A;  6EBX A;  1ABT A;  1LXH A;  4BDT B;  1HC9 B;  1L4W A;  2QJ9 C;  1JGK A;  1KBT A;  3HH7 A;  1F8U B;  1IDI A;  2QC1 A;  4DO8 A;  2QJA C;  2CDX A;  3KFD E;  1BXP A;  5IMY C;  5DZ5 A;  1KBA A; 
#chains in the Genus database with same CATH topology
 4RUD A;  1KU6 B;  1VB0 A;  1FSC A;  1NXB A;  4BIK B;  1ERG A;  4ZQY A;  1RL5 A;  1B41 B;  2H7Z A;  1HAA A;  3KFD I;  4QTI U;  2J8B A;  1CDT A;  1KBS A;  2CRT A;  1TXB A;  1IKC A;  1CDS A;  2H8U A;  1FFJ A;  1ONJ A;  5EBX A;  1CB9 A;  1ERA A;  2JVE A;  1CXO A;  1I02 A;  1W6B A;  1NTX A;  1TFS A;  4OM4 A;  1HAJ A;  1UG4 A;  1KC4 A;  1LXG A;  1KL8 A;  2CRS A;  1M9Z A;  1ZAD A;  2H62 D;  1RGJ A;  2OFS A;  2H7Z B;  2FD6 U;  2NBT A;  1IDG A;  1BTE A;  2LA1 A;  2MJ0 A;  2ERA A;  1QKE A;  1NYU A;  1S4Y A;  5DO6 A;  1PLO A;  1TGX A;  2H64 C;  2GOO B;  2PJY B;  2H5F A;  3EBX A;  3U73 U;  4XJJ A;  1CVO A;  1IQ9 A;  2X8B B;  3PLC A;  2QJB C;  3NEQ A;  4P7U A;  1HOY A;  1JBD A;  1XT3 A;  2UX2 A;  3LAQ U;  2H62 C;  2CTX A;  2CCX A;  1CTX A;  1LJZ A;  1CRE A;  3VTS A;  1COE A;  1KFH A;  1KS6 A;  1MAH F;  2MUP A;  2ABX A;  2K3G A;  1ES7 B;  3NDS A;  3U74 U;  2BHI A;  2L5S A;  2MJY A;  1G6M A;  4EY8 B;  2MFA A;  2HLQ A;  1LX5 B;  4HQP F;  1FAS A;  1FSS B;  1F94 A;  5DU1 A;  2HLR A;  2JQP A;  2MUO A;  1V6P A;  3FEV A;  1MR6 A;  1KXI A;  1H0J A;  1QM7 A;  4AEA A;  1IJC A;  1CDR A;  2N99 A;  5IMT D;  4UY2 C;  3ERA A;  2LCR A;  1CCQ A;  1REW C;  1CDQ A;  1IK8 A;  2GOO C;  1COD A;  2PJY C;  1TXA A;  2UWR A;  4FAO C;  1NYS A;  1NEA A;  4IYE A;  3QB4 B;  2MJ4 A;  1LSI A;  2MHY A;  3BT2 U;  3NH7 A;  2VLW A;  4KSN A;  4FAO E;  1DRS A;  1NOR A;  1YWH A;  1IDH A;  3EVS C;  3BT1 U;  1JE9 A;  1FF4 A;  4LFT A;  1HC9 A;  1IDL A;  2I9B E;  1KTZ B;  1NTN A;  1CRF A;  2L03 A;  1FRA A;  1CXN A;  1CHV S;  2H64 B;  4OM5 A;  1QKD A;  2BTX A;  6EBX A;  1ABT A;  1LXH A;  4BDT B;  1HC9 B;  1L4W A;  2QJ9 C;  1JGK A;  1KBT A;  3HH7 A;  1F8U B;  1IDI A;  2QC1 A;  4DO8 A;  2QJA C;  2CDX A;  3KFD E;  1BXP A;  5IMY C;  5DZ5 A;  1KBA A; 
#chains in the Genus database with same CATH homology
 4RUD A;  1KU6 B;  1VB0 A;  1FSC A;  1NXB A;  4BIK B;  1ERG A;  4ZQY A;  1RL5 A;  1B41 B;  2H7Z A;  1HAA A;  3KFD I;  4QTI U;  2J8B A;  1CDT A;  1KBS A;  2CRT A;  1TXB A;  1IKC A;  1CDS A;  2H8U A;  1FFJ A;  1ONJ A;  5EBX A;  1CB9 A;  1ERA A;  2JVE A;  1CXO A;  1I02 A;  1W6B A;  1NTX A;  1TFS A;  4OM4 A;  1HAJ A;  1UG4 A;  1KC4 A;  1LXG A;  1KL8 A;  2CRS A;  1M9Z A;  1ZAD A;  2H62 D;  1RGJ A;  2OFS A;  2H7Z B;  2FD6 U;  2NBT A;  1IDG A;  1BTE A;  2LA1 A;  2MJ0 A;  2ERA A;  1QKE A;  1NYU A;  1S4Y A;  5DO6 A;  1PLO A;  1TGX A;  2H64 C;  2GOO B;  2PJY B;  2H5F A;  3EBX A;  3U73 U;  4XJJ A;  1CVO A;  1IQ9 A;  2X8B B;  3PLC A;  2QJB C;  3NEQ A;  4P7U A;  1HOY A;  1JBD A;  1XT3 A;  2UX2 A;  3LAQ U;  2H62 C;  2CTX A;  2CCX A;  1CTX A;  1LJZ A;  1CRE A;  3VTS A;  1COE A;  1KFH A;  1KS6 A;  1MAH F;  2MUP A;  2ABX A;  2K3G A;  1ES7 B;  3NDS A;  3U74 U;  2BHI A;  2L5S A;  2MJY A;  1G6M A;  4EY8 B;  2MFA A;  2HLQ A;  1LX5 B;  4HQP F;  1FAS A;  1FSS B;  1F94 A;  5DU1 A;  2HLR A;  2JQP A;  2MUO A;  1V6P A;  3FEV A;  1MR6 A;  1KXI A;  1H0J A;  1QM7 A;  4AEA A;  1IJC A;  1CDR A;  2N99 A;  5IMT D;  4UY2 C;  3ERA A;  2LCR A;  1CCQ A;  1REW C;  1CDQ A;  1IK8 A;  2GOO C;  1COD A;  2PJY C;  1TXA A;  2UWR A;  4FAO C;  1NYS A;  1NEA A;  4IYE A;  3QB4 B;  2MJ4 A;  1LSI A;  2MHY A;  3BT2 U;  3NH7 A;  2VLW A;  4KSN A;  4FAO E;  1DRS A;  1NOR A;  1YWH A;  1IDH A;  3EVS C;  3BT1 U;  1JE9 A;  1FF4 A;  4LFT A;  1HC9 A;  1IDL A;  2I9B E;  1KTZ B;  1NTN A;  1CRF A;  2L03 A;  1FRA A;  1CXN A;  1CHV S;  2H64 B;  4OM5 A;  1QKD A;  2BTX A;  6EBX A;  1ABT A;  1LXH A;  4BDT B;  1HC9 B;  1L4W A;  2QJ9 C;  1JGK A;  1KBT A;  3HH7 A;  1F8U B;  1IDI A;  2QC1 A;  4DO8 A;  2QJA C;  2CDX A;  3KFD E;  1BXP A;  5IMY C;  5DZ5 A;  1KBA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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