1DWMA

Solution structure of linum usitatissinum trypsin inhibitor (luti)
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
69
structure length
69
Chain Sequence
SRRCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Serine proteinase inhibitor
molecule keywords LINUM USITATISSINUM TRYPSIN INHIBITOR
publication title Determination of a High Precision Structure of a Novel Protein, Linum Usitatissimum Trypsin Inhibitor (Luti), Using Computer-Aided Assignment of Noesy Cross-Peaks
pubmed doi rcsb
total genus 15
structure length 69
sequence length 69
ec nomenclature
pdb deposition date 1999-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00280 potato_inhibit Potato inhibitor I family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.10.10 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V, subunit A 1dwmA00
1Y4DI 1CSEI 1SIBI 1MITA 1Y3CI 3W0DA 4B2AB 1SBNI 1Y4AI 4B2BB 1TM3I 2TECI 1Y34I 1VBWA 1YPBI 3TECI 1Y48I 1YPAI 3RDZC 1HYMA 1TO2I 4H4FB 1DWMA 3CI2A 1TO1I 1TM1I 1TM5I 1LW6I 1MEEI 1TECI 1TM4I 3W0EA 1COAI 2SECI 3RDYA 1Y3FI 1CISA 1ACBI 1TINA 1Y3DI 4B2CB 2CI2I 1Y1KI 5FBZB 4B1TB 2SNII 1EGLA 1Y3BI 1YPCI 1TMGI 5FFNI 1Y33I 1TM7I
chains in the Genus database with same CATH superfamily
1Y4DI 1CSEI 1SIBI 1MITA 1Y3CI 2MGVA 3W0DA 4B2AB 1SBNI 1Y4AI 4B2BB 1TM3I 2TECI 1Y34I 2KUDA 1VBWA 1YPBI 3TECI 1Y48I 2KUIA 1YPAI 3RDZC 1HYMA 2KUEA 1TO2I 4H4FB 5E10A 1DWMA 2KUFA 5E0ZA 3CI2A 1TO1I 1TM1I 1TM5I 1LW6I 1MEEI 1TECI 1TM4I 5E0YA 3W0EA 1COAI 2SECI 3RDYA 1Y3FI 1CISA 1ACBI 1TINA 3OUVA 1Y3DI 4B2CB 2CI2I 1Y1KI 5FBZB 4B1TB 2SNII 1EGLA 3M9GA 1Y3BI 3PY9A 1YPCI 1TMGI 5FFNI 1Y33I 1TM7I
chains in the Genus database with same CATH topology
1Y4DI 1CSEI 1SIBI 1MITA 1Y3CI 3W0DA 4B2AB 1SBNI 1Y4AI 4B2BB 1TM3I 2TECI 1Y34I 1VBWA 1YPBI 3TECI 1Y48I 1YPAI 3RDZC 1HYMA 1TO2I 4H4FB 1DWMA 3CI2A 1TO1I 1TM1I 1TM5I 1LW6I 1MEEI 1TECI 1TM4I 3W0EA 1COAI 2SECI 3RDYA 1Y3FI 1CISA 1ACBI 1TINA 1Y3DI 4B2CB 2CI2I 1Y1KI 5FBZB 4B1TB 2SNII 1EGLA 1Y3BI 1YPCI 1TMGI 5FFNI 1Y33I 1TM7I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y4D I;  1CSE I;  1SIB I;  1MIT A;  1Y3C I;  3W0D A;  4B2A B;  1SBN I;  1Y4A I;  4B2B B;  1TM3 I;  2TEC I;  1Y34 I;  1VBW A;  1YPB I;  3TEC I;  1Y48 I;  1YPA I;  3RDZ C;  1HYM A;  1TO2 I;  4H4F B;  1DWM A;  3CI2 A;  1TO1 I;  1TM1 I;  1TM5 I;  1LW6 I;  1MEE I;  1TEC I;  1TM4 I;  3W0E A;  1COA I;  2SEC I;  3RDY A;  1Y3F I;  1CIS A;  1ACB I;  1TIN A;  1Y3D I;  4B2C B;  2CI2 I;  1Y1K I;  5FBZ B;  4B1T B;  2SNI I;  1EGL A;  1Y3B I;  1YPC I;  1TMG I;  5FFN I;  1Y33 I;  1TM7 I; 
#chains in the Genus database with same CATH topology
 1Y4D I;  1CSE I;  1SIB I;  1MIT A;  1Y3C I;  2MGV A;  3W0D A;  4B2A B;  1SBN I;  1Y4A I;  4B2B B;  1TM3 I;  2TEC I;  1Y34 I;  2KUD A;  1VBW A;  1YPB I;  3TEC I;  1Y48 I;  2KUI A;  1YPA I;  3RDZ C;  1HYM A;  2KUE A;  1TO2 I;  4H4F B;  5E10 A;  1DWM A;  2KUF A;  5E0Z A;  3CI2 A;  1TO1 I;  1TM1 I;  1TM5 I;  1LW6 I;  1MEE I;  1TEC I;  1TM4 I;  5E0Y A;  3W0E A;  1COA I;  2SEC I;  3RDY A;  1Y3F I;  1CIS A;  1ACB I;  1TIN A;  3OUV A;  1Y3D I;  4B2C B;  2CI2 I;  1Y1K I;  5FBZ B;  4B1T B;  2SNI I;  1EGL A;  3M9G A;  1Y3B I;  3PY9 A;  1YPC I;  1TMG I;  5FFN I;  1Y33 I;  1TM7 I; 
#chains in the Genus database with same CATH homology
 1Y4D I;  1CSE I;  1SIB I;  1MIT A;  1Y3C I;  3W0D A;  4B2A B;  1SBN I;  1Y4A I;  4B2B B;  1TM3 I;  2TEC I;  1Y34 I;  1VBW A;  1YPB I;  3TEC I;  1Y48 I;  1YPA I;  3RDZ C;  1HYM A;  1TO2 I;  4H4F B;  1DWM A;  3CI2 A;  1TO1 I;  1TM1 I;  1TM5 I;  1LW6 I;  1MEE I;  1TEC I;  1TM4 I;  3W0E A;  1COA I;  2SEC I;  3RDY A;  1Y3F I;  1CIS A;  1ACB I;  1TIN A;  1Y3D I;  4B2C B;  2CI2 I;  1Y1K I;  5FBZ B;  4B1T B;  2SNI I;  1EGL A;  1Y3B I;  1YPC I;  1TMG I;  5FFN I;  1Y33 I;  1TM7 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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