1E9JA

Solution structure of the a-subunit of human chorionic gonadotropin [including a single glcnac residue at asn52 and asn78]
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
92
structure length
92
Chain Sequence
APDVQDCPECTLQENPFFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVMGGFKVENHTACHCSTCYYHKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Glycoprotein
molecule keywords CHORIONIC GONADOTROPIN
publication title Effects of the N-linked glycans on the 3D structure of the free alpha-subunit of human chorionic gonadotropin.
pubmed doi rcsb
total genus 3
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2000-10-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1e9jA00
1VPFA 4ZBNA 2XV7A 3BDYV 1AOCA 4LXSJ 4UI2B 4QAFC 1KLCA 2ASKA 2QCQA 1BETA 5BPUA 4WPBA 1NYSB 4KXZA 4FAOA 2BHKA 1BNDB 1NYUB 1HRPA 1DZ7A 2IFGE 2C7WA 3SEKB 1QFWA 1B8KA 1TFGA 3E07A 5E4GA 5HK5A 1QFWB 2GNNA 2VPFA 4EC7A 4HQUA 1HCNA 3QTKA 1REWA 1B8MA 2P6AA 4LXRJ 5HI5A 1HCNB 1WWWV 3HH2A 2ARVA 4YCGC 1E9JA 4GLSE 2QJBA 4N1DA 5F3HI 1MJVA 4HQXA 5FV1V 3V2AA 1BNDA 2V5EB 3IJ2A 4GLNE 1REUA 5BQBA 1ZKZA 2X1XE 4UHYA 1MKKA 1BMPA 5BQEA 5BQ8B 3QB4A 1HCFA 4EAXA 3BUKA 3KFDA 1KLAA 1PDGA 5BQEB 1BJ1V 4UHZA 3BK3A 2R52A 1QTYR 5JZ7A 5BQ8D 1BTGA 1FZVA 4KV5A 3S1KV 3BMPA 2GYRA 1CZ8V 1HD4A 4X1JA 1WQ8A 4MPLA 3RJRA 1KTZA 5HI4A 1KATW 2QJ9A 3S1BV 1S4YB 2H62A 1MKGA 3JVFA 2XACA 5AEJA 1NT3A 2QJAA 2VXSA 1TZIV 1B98A 1ES7A 2QCWA 5F3BC 5BQ8A 2FJGV 5HHXA 2PJYA 5HHVA 1SG1A 1SGFB 4EDXV 2VWEA 1WQ9B 4HSAA 2KD3A 3P9WA 1M4UA 5HHDA 4UI0A 4MIDA 3B4VA 4ZFFC 2GYZA 2R53A 1XWDB 5HHCA 4MQWA 4BV4L 1LXIA 4MQWB 2FJHV 1JPYA 1FLTV 3MJKA 5FV2V 1WAQA 2GOOA 4EDWV 4KZNA 3FUBB 1AGQA 1HRPB 1WQ9A 1LX5A 1FL7A 5BQCA 5HI3A 2ARPA 3EVSB 3MJGA 4QHUC 2TGIA 4UI1A 1FL7B 2GH0C 4XPJA 4EFVA 2B0UA 4HR9A 1RV6V 4AY9A 3V6BA 1M4UL 2X1WA 4AY9B 1B8MB 4YCIC 2H64A 5HK5E 1TGJA 1TZHV 1VPPV 2QR0C 1XWDA 3EO1C 1TGKA 4QCIC
chains in the Genus database with same CATH superfamily
1VPFA 4ZBNA 2XV7A 3BDYV 1AOCA 4LXSJ 4UI2B 4QAFC 1KLCA 2ASKA 2QCQA 1BETA 5BPUA 4WPBA 1NYSB 4KXZA 4FAOA 2BHKA 1BNDB 1NYUB 1HRPA 1DZ7A 2IFGE 2C7WA 3SEKB 1QFWA 1B8KA 1TFGA 3E07A 5E4GA 5HK5A 1QFWB 2GNNA 2VPFA 4EC7A 4HQUA 1HCNA 3QTKA 1REWA 1B8MA 2P6AA 4LXRJ 5HI5A 1HCNB 1WWWV 3HH2A 2ARVA 4YCGC 1E9JA 4GLSE 2QJBA 4N1DA 5F3HI 1MJVA 4HQXA 5FV1V 3V2AA 1BNDA 2V5EB 3IJ2A 4GLNE 1REUA 5BQBA 1ZKZA 2X1XE 4UHYA 1MKKA 1BMPA 5BQEA 5BQ8B 3QB4A 1HCFA 4EAXA 3BUKA 3KFDA 1KLAA 1PDGA 5BQEB 1BJ1V 4UHZA 3BK3A 2R52A 1QTYR 5JZ7A 5BQ8D 1BTGA 1FZVA 4KV5A 3S1KV 3BMPA 2GYRA 1CZ8V 1HD4A 4X1JA 1WQ8A 4MPLA 3RJRA 1KTZA 5HI4A 1KATW 2QJ9A 3S1BV 1S4YB 2H62A 1MKGA 3JVFA 2XACA 5AEJA 1NT3A 2QJAA 2VXSA 1TZIV 1B98A 1ES7A 2QCWA 5F3BC 5BQ8A 2FJGV 5HHXA 2PJYA 5HHVA 1SG1A 1SGFB 4EDXV 2VWEA 1WQ9B 4HSAA 2KD3A 3P9WA 1M4UA 5HHDA 4UI0A 4MIDA 3B4VA 4ZFFC 2GYZA 2R53A 1XWDB 5HHCA 4MQWA 4BV4L 1LXIA 4MQWB 2FJHV 1JPYA 1FLTV 3MJKA 5FV2V 1WAQA 2GOOA 4EDWV 4KZNA 3FUBB 1AGQA 1HRPB 1WQ9A 1LX5A 1FL7A 5BQCA 5HI3A 2ARPA 3EVSB 3MJGA 4QHUC 2TGIA 4UI1A 1FL7B 2GH0C 4XPJA 4EFVA 2B0UA 4HR9A 1RV6V 4AY9A 3V6BA 1M4UL 2X1WA 4AY9B 1B8MB 4YCIC 2H64A 5HK5E 1TGJA 1TZHV 1VPPV 2QR0C 1XWDA 3EO1C 1TGKA 4QCIC
chains in the Genus database with same CATH topology
1VPFA 4ZBNA 2XV7A 3BDYV 1AOCA 4LXSJ 4UI2B 4QAFC 1KLCA 2ASKA 2QCQA 1BETA 5BPUA 4WPBA 1NYSB 4KXZA 4FAOA 2BHKA 1BNDB 1NYUB 1HRPA 1DZ7A 2IFGE 2C7WA 3SEKB 1QFWA 1B8KA 1TFGA 3E07A 5E4GA 5HK5A 1QFWB 2GNNA 2VPFA 4EC7A 4HQUA 1HCNA 3QTKA 1REWA 1B8MA 2P6AA 4LXRJ 5HI5A 1HCNB 1WWWV 3HH2A 2ARVA 4YCGC 1E9JA 4GLSE 2QJBA 4N1DA 5F3HI 1MJVA 4HQXA 5FV1V 3V2AA 1BNDA 2V5EB 3IJ2A 4GLNE 1REUA 5BQBA 1ZKZA 2X1XE 4UHYA 1MKKA 1BMPA 5BQEA 5BQ8B 3QB4A 1HCFA 4EAXA 3BUKA 3KFDA 1KLAA 1PDGA 5BQEB 1BJ1V 4UHZA 3BK3A 2R52A 1QTYR 5JZ7A 5BQ8D 1BTGA 1FZVA 4KV5A 3S1KV 3BMPA 2GYRA 1CZ8V 1HD4A 4X1JA 1WQ8A 4MPLA 3RJRA 1KTZA 5HI4A 1KATW 2QJ9A 3S1BV 1S4YB 2H62A 1MKGA 3JVFA 2XACA 5AEJA 1NT3A 2QJAA 2VXSA 1TZIV 1B98A 1ES7A 2QCWA 5F3BC 5BQ8A 2FJGV 5HHXA 2PJYA 5HHVA 1SG1A 1SGFB 4EDXV 2VWEA 1WQ9B 4HSAA 2KD3A 3P9WA 1M4UA 5HHDA 4UI0A 4MIDA 3B4VA 4ZFFC 2GYZA 2R53A 1XWDB 5HHCA 4MQWA 4BV4L 1LXIA 4MQWB 2FJHV 1JPYA 1FLTV 3MJKA 5FV2V 1WAQA 2GOOA 4EDWV 4KZNA 3FUBB 1AGQA 1HRPB 1WQ9A 1LX5A 1FL7A 5BQCA 5HI3A 2ARPA 3EVSB 3MJGA 4QHUC 2TGIA 4UI1A 1FL7B 2GH0C 4XPJA 4EFVA 2B0UA 4HR9A 1RV6V 4AY9A 3V6BA 1M4UL 2X1WA 4AY9B 1B8MB 4YCIC 2H64A 5HK5E 1TGJA 1TZHV 1VPPV 2QR0C 1XWDA 3EO1C 1TGKA 4QCIC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VPF A;  4ZBN A;  2XV7 A;  3BDY V;  1AOC A;  4LXS J;  4UI2 B;  4QAF C;  1KLC A;  2ASK A;  2QCQ A;  1BET A;  5BPU A;  4WPB A;  1NYS B;  4KXZ A;  4FAO A;  2BHK A;  1BND B;  1NYU B;  1HRP A;  1DZ7 A;  2IFG E;  2C7W A;  3SEK B;  1QFW A;  1B8K A;  1TFG A;  3E07 A;  5E4G A;  5HK5 A;  1QFW B;  2GNN A;  2VPF A;  4EC7 A;  4HQU A;  1HCN A;  3QTK A;  1REW A;  1B8M A;  2P6A A;  4LXR J;  5HI5 A;  1HCN B;  1WWW V;  3HH2 A;  2ARV A;  4YCG C;  1E9J A;  4GLS E;  2QJB A;  4N1D A;  5F3H I;  1MJV A;  4HQX A;  5FV1 V;  3V2A A;  1BND A;  2V5E B;  3IJ2 A;  4GLN E;  1REU A;  5BQB A;  1ZKZ A;  2X1X E;  4UHY A;  1MKK A;  1BMP A;  5BQE A;  5BQ8 B;  3QB4 A;  1HCF A;  4EAX A;  3BUK A;  3KFD A;  1KLA A;  1PDG A;  5BQE B;  1BJ1 V;  4UHZ A;  3BK3 A;  2R52 A;  1QTY R;  5JZ7 A;  5BQ8 D;  1BTG A;  1FZV A;  4KV5 A;  3S1K V;  3BMP A;  2GYR A;  1CZ8 V;  1HD4 A;  4X1J A;  1WQ8 A;  4MPL A;  3RJR A;  1KTZ A;  5HI4 A;  1KAT W;  2QJ9 A;  3S1B V;  1S4Y B;  2H62 A;  1MKG A;  3JVF A;  2XAC A;  5AEJ A;  1NT3 A;  2QJA A;  2VXS A;  1TZI V;  1B98 A;  1ES7 A;  2QCW A;  5F3B C;  5BQ8 A;  2FJG V;  5HHX A;  2PJY A;  5HHV A;  1SG1 A;  1SGF B;  4EDX V;  2VWE A;  1WQ9 B;  4HSA A;  2KD3 A;  3P9W A;  1M4U A;  5HHD A;  4UI0 A;  4MID A;  3B4V A;  4ZFF C;  2GYZ A;  2R53 A;  1XWD B;  5HHC A;  4MQW A;  4BV4 L;  1LXI A;  4MQW B;  2FJH V;  1JPY A;  1FLT V;  3MJK A;  5FV2 V;  1WAQ A;  2GOO A;  4EDW V;  4KZN A;  3FUB B;  1AGQ A;  1HRP B;  1WQ9 A;  1LX5 A;  1FL7 A;  5BQC A;  5HI3 A;  2ARP A;  3EVS B;  3MJG A;  4QHU C;  2TGI A;  4UI1 A;  1FL7 B;  2GH0 C;  4XPJ A;  4EFV A;  2B0U A;  4HR9 A;  1RV6 V;  4AY9 A;  3V6B A;  1M4U L;  2X1W A;  4AY9 B;  1B8M B;  4YCI C;  2H64 A;  5HK5 E;  1TGJ A;  1TZH V;  1VPP V;  2QR0 C;  1XWD A;  3EO1 C;  1TGK A;  4QCI C; 
#chains in the Genus database with same CATH topology
 1VPF A;  4ZBN A;  2XV7 A;  3BDY V;  1AOC A;  4LXS J;  4UI2 B;  4QAF C;  1KLC A;  2ASK A;  2QCQ A;  1BET A;  5BPU A;  4WPB A;  1NYS B;  4KXZ A;  4FAO A;  2BHK A;  1BND B;  1NYU B;  1HRP A;  1DZ7 A;  2IFG E;  2C7W A;  3SEK B;  1QFW A;  1B8K A;  1TFG A;  3E07 A;  5E4G A;  5HK5 A;  1QFW B;  2GNN A;  2VPF A;  4EC7 A;  4HQU A;  1HCN A;  3QTK A;  1REW A;  1B8M A;  2P6A A;  4LXR J;  5HI5 A;  1HCN B;  1WWW V;  3HH2 A;  2ARV A;  4YCG C;  1E9J A;  4GLS E;  2QJB A;  4N1D A;  5F3H I;  1MJV A;  4HQX A;  5FV1 V;  3V2A A;  1BND A;  2V5E B;  3IJ2 A;  4GLN E;  1REU A;  5BQB A;  1ZKZ A;  2X1X E;  4UHY A;  1MKK A;  1BMP A;  5BQE A;  5BQ8 B;  3QB4 A;  1HCF A;  4EAX A;  3BUK A;  3KFD A;  1KLA A;  1PDG A;  5BQE B;  1BJ1 V;  4UHZ A;  3BK3 A;  2R52 A;  1QTY R;  5JZ7 A;  5BQ8 D;  1BTG A;  1FZV A;  4KV5 A;  3S1K V;  3BMP A;  2GYR A;  1CZ8 V;  1HD4 A;  4X1J A;  1WQ8 A;  4MPL A;  3RJR A;  1KTZ A;  5HI4 A;  1KAT W;  2QJ9 A;  3S1B V;  1S4Y B;  2H62 A;  1MKG A;  3JVF A;  2XAC A;  5AEJ A;  1NT3 A;  2QJA A;  2VXS A;  1TZI V;  1B98 A;  1ES7 A;  2QCW A;  5F3B C;  5BQ8 A;  2FJG V;  5HHX A;  2PJY A;  5HHV A;  1SG1 A;  1SGF B;  4EDX V;  2VWE A;  1WQ9 B;  4HSA A;  2KD3 A;  3P9W A;  1M4U A;  5HHD A;  4UI0 A;  4MID A;  3B4V A;  4ZFF C;  2GYZ A;  2R53 A;  1XWD B;  5HHC A;  4MQW A;  4BV4 L;  1LXI A;  4MQW B;  2FJH V;  1JPY A;  1FLT V;  3MJK A;  5FV2 V;  1WAQ A;  2GOO A;  4EDW V;  4KZN A;  3FUB B;  1AGQ A;  1HRP B;  1WQ9 A;  1LX5 A;  1FL7 A;  5BQC A;  5HI3 A;  2ARP A;  3EVS B;  3MJG A;  4QHU C;  2TGI A;  4UI1 A;  1FL7 B;  2GH0 C;  4XPJ A;  4EFV A;  2B0U A;  4HR9 A;  1RV6 V;  4AY9 A;  3V6B A;  1M4U L;  2X1W A;  4AY9 B;  1B8M B;  4YCI C;  2H64 A;  5HK5 E;  1TGJ A;  1TZH V;  1VPP V;  2QR0 C;  1XWD A;  3EO1 C;  1TGK A;  4QCI C; 
#chains in the Genus database with same CATH homology
 1VPF A;  4ZBN A;  2XV7 A;  3BDY V;  1AOC A;  4LXS J;  4UI2 B;  4QAF C;  1KLC A;  2ASK A;  2QCQ A;  1BET A;  5BPU A;  4WPB A;  1NYS B;  4KXZ A;  4FAO A;  2BHK A;  1BND B;  1NYU B;  1HRP A;  1DZ7 A;  2IFG E;  2C7W A;  3SEK B;  1QFW A;  1B8K A;  1TFG A;  3E07 A;  5E4G A;  5HK5 A;  1QFW B;  2GNN A;  2VPF A;  4EC7 A;  4HQU A;  1HCN A;  3QTK A;  1REW A;  1B8M A;  2P6A A;  4LXR J;  5HI5 A;  1HCN B;  1WWW V;  3HH2 A;  2ARV A;  4YCG C;  1E9J A;  4GLS E;  2QJB A;  4N1D A;  5F3H I;  1MJV A;  4HQX A;  5FV1 V;  3V2A A;  1BND A;  2V5E B;  3IJ2 A;  4GLN E;  1REU A;  5BQB A;  1ZKZ A;  2X1X E;  4UHY A;  1MKK A;  1BMP A;  5BQE A;  5BQ8 B;  3QB4 A;  1HCF A;  4EAX A;  3BUK A;  3KFD A;  1KLA A;  1PDG A;  5BQE B;  1BJ1 V;  4UHZ A;  3BK3 A;  2R52 A;  1QTY R;  5JZ7 A;  5BQ8 D;  1BTG A;  1FZV A;  4KV5 A;  3S1K V;  3BMP A;  2GYR A;  1CZ8 V;  1HD4 A;  4X1J A;  1WQ8 A;  4MPL A;  3RJR A;  1KTZ A;  5HI4 A;  1KAT W;  2QJ9 A;  3S1B V;  1S4Y B;  2H62 A;  1MKG A;  3JVF A;  2XAC A;  5AEJ A;  1NT3 A;  2QJA A;  2VXS A;  1TZI V;  1B98 A;  1ES7 A;  2QCW A;  5F3B C;  5BQ8 A;  2FJG V;  5HHX A;  2PJY A;  5HHV A;  1SG1 A;  1SGF B;  4EDX V;  2VWE A;  1WQ9 B;  4HSA A;  2KD3 A;  3P9W A;  1M4U A;  5HHD A;  4UI0 A;  4MID A;  3B4V A;  4ZFF C;  2GYZ A;  2R53 A;  1XWD B;  5HHC A;  4MQW A;  4BV4 L;  1LXI A;  4MQW B;  2FJH V;  1JPY A;  1FLT V;  3MJK A;  5FV2 V;  1WAQ A;  2GOO A;  4EDW V;  4KZN A;  3FUB B;  1AGQ A;  1HRP B;  1WQ9 A;  1LX5 A;  1FL7 A;  5BQC A;  5HI3 A;  2ARP A;  3EVS B;  3MJG A;  4QHU C;  2TGI A;  4UI1 A;  1FL7 B;  2GH0 C;  4XPJ A;  4EFV A;  2B0U A;  4HR9 A;  1RV6 V;  4AY9 A;  3V6B A;  1M4U L;  2X1W A;  4AY9 B;  1B8M B;  4YCI C;  2H64 A;  5HK5 E;  1TGJ A;  1TZH V;  1VPP V;  2QR0 C;  1XWD A;  3EO1 C;  1TGK A;  4QCI C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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