1EC6A

Crystal structure of nova-2 kh3 k-homology rna-binding domain bound to 20-mer rna hairpin
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
87
structure length
87
Chain Sequence
MKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein/rna
molecule keywords 20-MER RNA HAIRPIN
publication title Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome.
pubmed doi rcsb
source organism Homo sapiens
total genus 27
structure length 87
sequence length 87
chains with identical sequence B
ec nomenclature
pdb deposition date 2000-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1ec6A00
2NN6G 2CTJA 2OPUA 1J4WA 2BA0A 2JVZA 1WE8A 1X4NA 4BA1I 5C0XG 1ZTGA 2AXYA 1VIGA 1DT4A 2CTFA 4LIJA 2BL5A 1TUAA 2CTLA 1KHMA 2CTKA 4IFDG 2YQRA 2JEAI 3U1KA 2Z0SA 3V69A 2PQUA 4OO1G 4WANA 4B8TA 5JEAG 1VIHA 1X4MA 2CPQA 2JZXA 2DGRA 4WALA 2HH2A 1ZZKA 2JE6I 3L7ZC 2E3UA 4NBQA 1K1GA 2QNDA 1WVNA 1DTJA 2ANNA 3AEVB 4BA2I 4AM3A 4JVHA 2FMRA 2CTEA 3VKEA 2P2RA 2PY9A 2ANRA 1EC6A 4AIMA 1ZZIA 2JA9A 2MJHA 2OPVA 1ZZJA 4JVYA 1J5KA 5K36G 2HH3A 2JEBI 2CTMA 4QMFB
chains in the Genus database with same CATH superfamily
1IBKH 2LTMA 3QD7X 4LF4H 1VIGA 2M6QA 2CTLA 2CTKA 4EC5A 2UUBH 4LFCH 4DR1H 2UUAH 3EZJA 4DR6H 2PQUA 4LFBH 4X64H 4JI1H 1N32H 1X4MA 4NZRM 4B3TH 1I94H 2Y3MA 2DGRA 4X62H 1IBMH 5A2QW 2E3UA 4G08A 4NBQA 2ZQEA 4DR5H 1WVNA 5DT9A 5IWAH 1N36H 1EC6A 4AIMA 1V9NA 4NZTM 1PQXA 1MSZA 3OTOH 2OPVA 1ZZJA 4DV1H 2MJHA 3T1HH 4LF5H 4LF6H 4JVYA 3KDKA 4DR7H 5IT9W 2UXCH 2NN6G 4OD6A 4DR4H 1FJGH 1FKAH 2JVZA 1WE8A 1X4NA 1ZTGA 3GKUA 2AXYA 4LIJA 3RF2A 2UXBH 2D9IA 4DUZH 1S20A 2E5LH 1TUAA 4OX9H 1KHMA 1NXUA 4JI5H 4IFDG 5FLXW 2M8WA 2UU9H 1XRHA 4NXMH 2Z0SA 3KDGA 3NCVA 4DUYH 1XMOH 1ODHA 2O4CA 1ZZKA 5BR8H 3I0PA 4FJUA 3OSSD 4DV7H 4JVHA 3GABA 2FMRA 2LRRA 2P2RA 2PY9A 1I6UA 2CWHA 2UXDH 2G8YA 1ZZIA 4DV3H 4DV5H 4JI6H 3GR5A 4KHPH 2VQFH 4JI8H 2HH3A 4B3SH 2JEBI 4H8AA 4PDBA 4AQYH 5LMNH 2OPUA 1J4WA 4BA1I 5C0XG 4JI3H 2F4VH 2ZM6H 1DT4A 4X66H 3J81W 1X0AA 4LF9H 5LL6b 1N34H 4LFAH 1S03G 2VQEH 4JI7H 2UUCH 2YQRA 4DV6H 2JEAI 1XNQH 1Z2IA 5LMUH 4NXNH 4FJSA 3UOEA 4DV2H 2FPHX 4OCHA 4B8CD 4E9JA 3T1YH 1IBLH 4WALA 2JE6I 2K1HA 4DV4H 2LF0A 2QNDA 1DTJA 1XNRH 3AEVB 1VBIA 4JI0H 4JV5H 3VKEA 4B3RH 4LF8H 1F0XA 2FFMA 1J5KA 2X06A 1N33H 4K0KH 4GKJH 1UG8A 4OO1G 1HR0H 2A1SA 2LTLA 4LF7H 3FAUA 1SEIA 2CTJA 3JAMW 2BA0A 4DR3H 4JI2H 2CTFA 4DV0H 3J7AK 1WTJA 1HNXH 2BL5A 2PT7G 2VKCA 4DR2H 2HHHH 3U1KA 1V8CA 1WHRA 3OETA 3V69A 4B3MH 3SB1A 3J80W 4B8TA 4WANA 5JEAG 1VIHA 2CPMA 1AN7A 4X65H 2CPQA 2JZXA 4YHHH 2HH2A 1K1GA 3L7ZC 4JI4H 4AM3A 2ANNA 4BA2I 2CTEA 1XMQH 1X9ZA 1J5EH 2ANRA 1HNWH 2CWFA 2JA9A 4YY3H 5K36G 4JYAH 4GKKH 1HNZH 2CTMA 4QMFB
chains in the Genus database with same CATH topology
2NN6G 2CTJA 2OPUA 1J4WA 2BA0A 2JVZA 1WE8A 1X4NA 4BA1I 5C0XG 1ZTGA 2AXYA 1VIGA 1DT4A 2CTFA 4LIJA 2BL5A 1TUAA 2CTLA 1KHMA 2CTKA 4IFDG 2YQRA 2JEAI 3U1KA 2Z0SA 3V69A 2PQUA 4OO1G 4WANA 4B8TA 5JEAG 1VIHA 1X4MA 2CPQA 2JZXA 2DGRA 4WALA 2HH2A 1ZZKA 2JE6I 3L7ZC 2E3UA 4NBQA 1K1GA 2QNDA 1WVNA 1DTJA 2ANNA 3AEVB 4BA2I 4AM3A 4JVHA 2FMRA 2CTEA 3VKEA 2P2RA 2PY9A 2ANRA 1EC6A 4AIMA 1ZZIA 2JA9A 2MJHA 2OPVA 1ZZJA 4JVYA 1J5KA 5K36G 2HH3A 2JEBI 2CTMA 4QMFB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NN6 G;  2CTJ A;  2OPU A;  1J4W A;  2BA0 A;  2JVZ A;  1WE8 A;  1X4N A;  4BA1 I;  5C0X G;  1ZTG A;  2AXY A;  1VIG A;  1DT4 A;  2CTF A;  4LIJ A;  2BL5 A;  1TUA A;  2CTL A;  1KHM A;  2CTK A;  4IFD G;  2YQR A;  2JEA I;  3U1K A;  2Z0S A;  3V69 A;  2PQU A;  4OO1 G;  4WAN A;  4B8T A;  5JEA G;  1VIH A;  1X4M A;  2CPQ A;  2JZX A;  2DGR A;  4WAL A;  2HH2 A;  1ZZK A;  2JE6 I;  3L7Z C;  2E3U A;  4NBQ A;  1K1G A;  2QND A;  1WVN A;  1DTJ A;  2ANN A;  3AEV B;  4BA2 I;  4AM3 A;  4JVH A;  2FMR A;  2CTE A;  3VKE A;  2P2R A;  2PY9 A;  2ANR A;  1EC6 A;  4AIM A;  1ZZI A;  2JA9 A;  2MJH A;  2OPV A;  1ZZJ A;  4JVY A;  1J5K A;  5K36 G;  2HH3 A;  2JEB I;  2CTM A;  4QMF B; 
#chains in the Genus database with same CATH topology
 1IBK H;  2LTM A;  3QD7 X;  4LF4 H;  1VIG A;  2M6Q A;  2CTL A;  2CTK A;  4EC5 A;  2UUB H;  4LFC H;  4DR1 H;  2UUA H;  3EZJ A;  4DR6 H;  2PQU A;  4LFB H;  4X64 H;  4JI1 H;  1N32 H;  1X4M A;  4NZR M;  4B3T H;  1I94 H;  2Y3M A;  2DGR A;  4X62 H;  1IBM H;  5A2Q W;  2E3U A;  4G08 A;  4NBQ A;  2ZQE A;  4DR5 H;  1WVN A;  5DT9 A;  5IWA H;  1N36 H;  1EC6 A;  4AIM A;  1V9N A;  4NZT M;  1PQX A;  1MSZ A;  3OTO H;  2OPV A;  1ZZJ A;  4DV1 H;  2MJH A;  3T1H H;  4LF5 H;  4LF6 H;  4JVY A;  3KDK A;  4DR7 H;  5IT9 W;  2UXC H;  2NN6 G;  4OD6 A;  4DR4 H;  1FJG H;  1FKA H;  2JVZ A;  1WE8 A;  1X4N A;  1ZTG A;  3GKU A;  2AXY A;  4LIJ A;  3RF2 A;  2UXB H;  2D9I A;  4DUZ H;  1S20 A;  2E5L H;  1TUA A;  4OX9 H;  1KHM A;  1NXU A;  4JI5 H;  4IFD G;  5FLX W;  2M8W A;  2UU9 H;  1XRH A;  4NXM H;  2Z0S A;  3KDG A;  3NCV A;  4DUY H;  1XMO H;  1ODH A;  2O4C A;  1ZZK A;  5BR8 H;  3I0P A;  4FJU A;  3OSS D;  4DV7 H;  4JVH A;  3GAB A;  2FMR A;  2LRR A;  2P2R A;  2PY9 A;  1I6U A;  2CWH A;  2UXD H;  2G8Y A;  1ZZI A;  4DV3 H;  4DV5 H;  4JI6 H;  3GR5 A;  4KHP H;  2VQF H;  4JI8 H;  2HH3 A;  4B3S H;  2JEB I;  4H8A A;  4PDB A;  4AQY H;  5LMN H;  2OPU A;  1J4W A;  4BA1 I;  5C0X G;  4JI3 H;  2F4V H;  2ZM6 H;  1DT4 A;  4X66 H;  3J81 W;  1X0A A;  4LF9 H;  5LL6 b;  1N34 H;  4LFA H;  1S03 G;  2VQE H;  4JI7 H;  2UUC H;  2YQR A;  4DV6 H;  2JEA I;  1XNQ H;  1Z2I A;  5LMU H;  4NXN H;  4FJS A;  3UOE A;  4DV2 H;  2FPH X;  4OCH A;  4B8C D;  4E9J A;  3T1Y H;  1IBL H;  4WAL A;  2JE6 I;  2K1H A;  4DV4 H;  2LF0 A;  2QND A;  1DTJ A;  1XNR H;  3AEV B;  1VBI A;  4JI0 H;  4JV5 H;  3VKE A;  4B3R H;  4LF8 H;  1F0X A;  2FFM A;  1J5K A;  2X06 A;  1N33 H;  4K0K H;  4GKJ H;  1UG8 A;  4OO1 G;  1HR0 H;  2A1S A;  2LTL A;  4LF7 H;  3FAU A;  1SEI A;  2CTJ A;  3JAM W;  2BA0 A;  4DR3 H;  4JI2 H;  2CTF A;  4DV0 H;  3J7A K;  1WTJ A;  1HNX H;  2BL5 A;  2PT7 G;  2VKC A;  4DR2 H;  2HHH H;  3U1K A;  1V8C A;  1WHR A;  3OET A;  3V69 A;  4B3M H;  3SB1 A;  3J80 W;  4B8T A;  4WAN A;  5JEA G;  1VIH A;  2CPM A;  1AN7 A;  4X65 H;  2CPQ A;  2JZX A;  4YHH H;  2HH2 A;  1K1G A;  3L7Z C;  4JI4 H;  4AM3 A;  2ANN A;  4BA2 I;  2CTE A;  1XMQ H;  1X9Z A;  1J5E H;  2ANR A;  1HNW H;  2CWF A;  2JA9 A;  4YY3 H;  5K36 G;  4JYA H;  4GKK H;  1HNZ H;  2CTM A;  4QMF B; 
#chains in the Genus database with same CATH homology
 2NN6 G;  2CTJ A;  2OPU A;  1J4W A;  2BA0 A;  2JVZ A;  1WE8 A;  1X4N A;  4BA1 I;  5C0X G;  1ZTG A;  2AXY A;  1VIG A;  1DT4 A;  2CTF A;  4LIJ A;  2BL5 A;  1TUA A;  2CTL A;  1KHM A;  2CTK A;  4IFD G;  2YQR A;  2JEA I;  3U1K A;  2Z0S A;  3V69 A;  2PQU A;  4OO1 G;  4WAN A;  4B8T A;  5JEA G;  1VIH A;  1X4M A;  2CPQ A;  2JZX A;  2DGR A;  4WAL A;  2HH2 A;  1ZZK A;  2JE6 I;  3L7Z C;  2E3U A;  4NBQ A;  1K1G A;  2QND A;  1WVN A;  1DTJ A;  2ANN A;  3AEV B;  4BA2 I;  4AM3 A;  4JVH A;  2FMR A;  2CTE A;  3VKE A;  2P2R A;  2PY9 A;  2ANR A;  1EC6 A;  4AIM A;  1ZZI A;  2JA9 A;  2MJH A;  2OPV A;  1ZZJ A;  4JVY A;  1J5K A;  5K36 G;  2HH3 A;  2JEB I;  2CTM A;  4QMF B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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