1EIKA

Solution structure of rna polymerase subunit rpb5 from methanobacterium thermoautotrophicum
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
77
structure length
77
Chain Sequence
MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSPTAEEFVTYRLVQD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords RNA POLYMERASE SUBUNIT RPB5
publication title Solution structure of the RNA polymerase subunit RPB5 from Methanobacterium thermoautotrophicum.
pubmed doi rcsb
source organism Methanothermobacter thermautotrophicus
total genus 10
structure length 77
sequence length 77
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2000-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01191 RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.20 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit RPB5-like RNA polymerase subunit 1eikA00
3S15E 1EIKA 2R93E 3FKIE 2E2IE 4BY1E 5IYDE 1K83E 2NVYE 2JA7E 2NVTE 5IP9E 4BBSE 5M3ME 1TWCE 1TWGE 3S1NE 4A3ME 2E2HE 4C2ME 2YU9E 3GTKE 1TWAE 3M3YE 5M5XE 3GTGE 2B63E 4A3EE 1WCME 3S1RE 2PMZH 3GTOE 4A3CE 4Y52E 2R92E 3GTLE 4A3DE 3GTPE 3HOZE 3H0GE 3RZDE 3GTQE 4A3GE 4Y7NE 5C3EE 3PO2E 5C4JE 5C44E 2Y0SH 3M4OE 1TWFE 3S14E 1TWHE 4A3KE 4X6AE 4A3FE 2R7ZE 5FLME 2VUME 1Y1WE 3RZOE 3S17E 3S2HE 3K7AE 1I3QE 3HOYE 1Y1VE 1SFOE 3S1ME 5IYCE 4C3JE 4BY7E 3HOVE 2E2JE 5IYBE 5FJ8E 4A3LE 4C3IE 3I4NE 2JA5E 3S1QE 2WAQH 3CQZE 1I6HE 2NVXE 3GTME 3H3VF 5M5YE 4BXXE 4AYBH 5M3FE 4A3JE 4A93E 5M5WE 3HOXE 1I50E 1DZFA 3HOWE 3I4ME 3PO3E 4A3IE 2NVQE 3HOUE 2WB1H 3S16E 4QIWH 4C3HE 3S2DE 5C4XE 5IP7E 3GTJE 2JA8E 2JA6E 4A3BE 1R9TE 4BBRE 3HKZH
chains in the Genus database with same CATH superfamily
4QIWK 3S15E 1EIKA 1ZYRE 5C3EF 2JA7F 2NVTF 5IP9F 4BBSF 4XLPE 5M3MF 1TWCF 1TWGF 5TMCE 5E18E 3S1NF 5C4JF 2R93E 4A3MF 3FKIE 2E2HF 2E2IE 4BY1E 5IYDE 1SMYE 4C2MF 2YU9F 1R9TE 4YFNE 3GTKF 1K83E 2NVYE 3HKZK 3M3YF 2JA7E 2NVTE 1IW7E 5IP9E 4BBSE 5M3ME 1TWCE 1TWGE 5M5XF 3GTGF 3S1NE 1HQME 4A3ME 2E2HE 2VUMF 4MEYE 5FLMF 1WCMF 2Y0SI 3S1RF 4C2ME 1Y1WF 2YU9E 3S17F 4GZYE 3GTKE 3GTOF 4A3CF 4Y52F 1TWAE 3K7AF 4OIOE 3M3YE 1Y1VF 4XSXE 5M5XE 3GTGE 1SFOF 4OIPE 2B63E 3GTPF 4A3EE 1WCME 3S1RE 3H0GF 3RZDF 2PMZH 3GTOE 3GTQF 4A3CE 4A3GF 4Y52E 3HOVF 2R92E 4Y7NF 3GTLE 5E17E 4A3DE 4OINE 3GTPE 3HOZE 4YG2E 3PO2F 3H0GE 4G7ZE 4YFKE 3RZDE 4OIRE 3GTQE 4A3GE 4LK0E 5C44F 4YFXE 2PMZK 3M4OF 2JA5F 1TWFF 1YNJK 3S14F 3S1QF 4Y7NE 1TWHF 4A3KF 5C3EE 4X6AF 2NVXF 3PO2E 5C4JE 3H3VG 5C44E 4A3FF 2R7ZF 2Y0SH 3RZOF 3M4OE 1TWFE 3S14E 4BXXF 4XSZE 3S2HF 1TWHE 4A3KE 1I3QF 1YNNK 3EQLE 3HOYF 4X6AE 2A68E 4A3FE 2R7ZE 5FLME 2VUME 1Y1WE 2A6HE 5IYCF 3RZOE 3S1MF 3S17E 4KN4E 2KRXA 4C3JF 3S2HE 4BY7F 3K7AE 2A6EE 1I3QE 3I4MF 5D4DE 3HOYE 3PO3F 3DXJE 4MEXE 1Y1VE 2NVQF 1SFOE 2E2JF 3S1ME 5IYCE 5TMFE 5IYBF 4C3JE 5FJ8F 4C3IF 3I4NF 4BY7E 4C3HF 2A69E 3HOVE 2E2JE 2BE5E 3CQZF 5IP7F 3GTJF 1I6HF 2WB1I 2JA6F 3GTMF 5IYBE 2PPBE 5FJ8E 4A3LE 4C3IE 3I4NE 5M5YF 2JA5E 3S1QE 4JK1E 2WAQH 3CQZE 1I6HE 5M3FF 4A3JF 2O5JE 2NVXE 3GTME 2E2IF 5M5WF 3H3VF 3HOXF 4BY1F 4A93F 4G7OE 5M5YE 5D4CE 4BXXE 4LJZE 3WODE 1I50F 4G7HE 5BYHE 3HOWF 4MQ9E 1I6VE 4AYBH 2WAQK 4Q5SE 5M3FE 4A3JE 5M5WE 4A3IF 3HOXE 4KMUE 4A93E 3HOUF 3S16F 1TWAF 5IPLE 4ZH4E 1I50E 5D4EE 1DZFA 3HOWE 3S2DF 3I4ME 2O5IE 3PO3E 4A3IE 2B63F 2NVQE 4A3EF 5C4XF 4AYBK 3HOUE 2WB1H 1QKLA 4KN7E 4LK1E 2JA8F 3S16E 4A3BF 4QIWH 1R9TF 4BBRF 4A3LF 2R92F 4C3HE 3GTLF 3S2DE 4A3DF 2CW0E 1K83F 3S15F 4XLNE 4LLGE 3HOZF 5C4XE 5IP7E 3GTJE 4OIQE 2JA8E 2R93F 4Q4ZE 2JA6E 3FKIF 4A3BE 5IYDF 4BBRE 3HKZH 2NVYF
chains in the Genus database with same CATH topology
3S15E 1EIKA 2R93E 3FKIE 2E2IE 4BY1E 5IYDE 1K83E 2NVYE 2JA7E 2NVTE 5IP9E 4BBSE 5M3ME 1TWCE 1TWGE 3S1NE 4A3ME 2E2HE 4C2ME 2YU9E 3GTKE 1TWAE 3M3YE 5M5XE 3GTGE 2B63E 4A3EE 1WCME 3S1RE 2PMZH 3GTOE 4A3CE 4Y52E 2R92E 3GTLE 4A3DE 3GTPE 3HOZE 3H0GE 3RZDE 3GTQE 4A3GE 4Y7NE 5C3EE 3PO2E 5C4JE 5C44E 2Y0SH 3M4OE 1TWFE 3S14E 1TWHE 4A3KE 4X6AE 4A3FE 2R7ZE 5FLME 2VUME 1Y1WE 3RZOE 3S17E 3S2HE 3K7AE 1I3QE 3HOYE 1Y1VE 1SFOE 3S1ME 5IYCE 4C3JE 4BY7E 3HOVE 2E2JE 5IYBE 5FJ8E 4A3LE 4C3IE 3I4NE 2JA5E 3S1QE 2WAQH 3CQZE 1I6HE 2NVXE 3GTME 3H3VF 5M5YE 4BXXE 4AYBH 5M3FE 4A3JE 4A93E 5M5WE 3HOXE 1I50E 1DZFA 3HOWE 3I4ME 3PO3E 4A3IE 2NVQE 3HOUE 2WB1H 3S16E 4QIWH 4C3HE 3S2DE 5C4XE 5IP7E 3GTJE 2JA8E 2JA6E 4A3BE 1R9TE 4BBRE 3HKZH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S15 E;  1EIK A;  2R93 E;  3FKI E;  2E2I E;  4BY1 E;  5IYD E;  1K83 E;  2NVY E;  2JA7 E;  2NVT E;  5IP9 E;  4BBS E;  5M3M E;  1TWC E;  1TWG E;  3S1N E;  4A3M E;  2E2H E;  4C2M E;  2YU9 E;  3GTK E;  1TWA E;  3M3Y E;  5M5X E;  3GTG E;  2B63 E;  4A3E E;  1WCM E;  3S1R E;  2PMZ H;  3GTO E;  4A3C E;  4Y52 E;  2R92 E;  3GTL E;  4A3D E;  3GTP E;  3HOZ E;  3H0G E;  3RZD E;  3GTQ E;  4A3G E;  4Y7N E;  5C3E E;  3PO2 E;  5C4J E;  5C44 E;  2Y0S H;  3M4O E;  1TWF E;  3S14 E;  1TWH E;  4A3K E;  4X6A E;  4A3F E;  2R7Z E;  5FLM E;  2VUM E;  1Y1W E;  3RZO E;  3S17 E;  3S2H E;  3K7A E;  1I3Q E;  3HOY E;  1Y1V E;  1SFO E;  3S1M E;  5IYC E;  4C3J E;  4BY7 E;  3HOV E;  2E2J E;  5IYB E;  5FJ8 E;  4A3L E;  4C3I E;  3I4N E;  2JA5 E;  3S1Q E;  2WAQ H;  3CQZ E;  1I6H E;  2NVX E;  3GTM E;  3H3V F;  5M5Y E;  4BXX E;  4AYB H;  5M3F E;  4A3J E;  4A93 E;  5M5W E;  3HOX E;  1I50 E;  1DZF A;  3HOW E;  3I4M E;  3PO3 E;  4A3I E;  2NVQ E;  3HOU E;  2WB1 H;  3S16 E;  4QIW H;  4C3H E;  3S2D E;  5C4X E;  5IP7 E;  3GTJ E;  2JA8 E;  2JA6 E;  4A3B E;  1R9T E;  4BBR E;  3HKZ H; 
#chains in the Genus database with same CATH topology
 4QIW K;  3S15 E;  1EIK A;  1ZYR E;  5C3E F;  2JA7 F;  2NVT F;  5IP9 F;  4BBS F;  4XLP E;  5M3M F;  1TWC F;  1TWG F;  5TMC E;  5E18 E;  3S1N F;  5C4J F;  2R93 E;  4A3M F;  3FKI E;  2E2H F;  2E2I E;  4BY1 E;  5IYD E;  1SMY E;  4C2M F;  2YU9 F;  1R9T E;  4YFN E;  3GTK F;  1K83 E;  2NVY E;  3HKZ K;  3M3Y F;  2JA7 E;  2NVT E;  1IW7 E;  5IP9 E;  4BBS E;  5M3M E;  1TWC E;  1TWG E;  5M5X F;  3GTG F;  3S1N E;  1HQM E;  4A3M E;  2E2H E;  2VUM F;  4MEY E;  5FLM F;  1WCM F;  2Y0S I;  3S1R F;  4C2M E;  1Y1W F;  2YU9 E;  3S17 F;  4GZY E;  3GTK E;  3GTO F;  4A3C F;  4Y52 F;  1TWA E;  3K7A F;  4OIO E;  3M3Y E;  1Y1V F;  4XSX E;  5M5X E;  3GTG E;  1SFO F;  4OIP E;  2B63 E;  3GTP F;  4A3E E;  1WCM E;  3S1R E;  3H0G F;  3RZD F;  2PMZ H;  3GTO E;  3GTQ F;  4A3C E;  4A3G F;  4Y52 E;  3HOV F;  2R92 E;  4Y7N F;  3GTL E;  5E17 E;  4A3D E;  4OIN E;  3GTP E;  3HOZ E;  4YG2 E;  3PO2 F;  3H0G E;  4G7Z E;  4YFK E;  3RZD E;  4OIR E;  3GTQ E;  4A3G E;  4LK0 E;  5C44 F;  4YFX E;  2PMZ K;  3M4O F;  2JA5 F;  1TWF F;  1YNJ K;  3S14 F;  3S1Q F;  4Y7N E;  1TWH F;  4A3K F;  5C3E E;  4X6A F;  2NVX F;  3PO2 E;  5C4J E;  3H3V G;  5C44 E;  4A3F F;  2R7Z F;  2Y0S H;  3RZO F;  3M4O E;  1TWF E;  3S14 E;  4BXX F;  4XSZ E;  3S2H F;  1TWH E;  4A3K E;  1I3Q F;  1YNN K;  3EQL E;  3HOY F;  4X6A E;  2A68 E;  4A3F E;  2R7Z E;  5FLM E;  2VUM E;  1Y1W E;  2A6H E;  5IYC F;  3RZO E;  3S1M F;  3S17 E;  4KN4 E;  2KRX A;  4C3J F;  3S2H E;  4BY7 F;  3K7A E;  2A6E E;  1I3Q E;  3I4M F;  5D4D E;  3HOY E;  3PO3 F;  3DXJ E;  4MEX E;  1Y1V E;  2NVQ F;  1SFO E;  2E2J F;  3S1M E;  5IYC E;  5TMF E;  5IYB F;  4C3J E;  5FJ8 F;  4C3I F;  3I4N F;  4BY7 E;  4C3H F;  2A69 E;  3HOV E;  2E2J E;  2BE5 E;  3CQZ F;  5IP7 F;  3GTJ F;  1I6H F;  2WB1 I;  2JA6 F;  3GTM F;  5IYB E;  2PPB E;  5FJ8 E;  4A3L E;  4C3I E;  3I4N E;  5M5Y F;  2JA5 E;  3S1Q E;  4JK1 E;  2WAQ H;  3CQZ E;  1I6H E;  5M3F F;  4A3J F;  2O5J E;  2NVX E;  3GTM E;  2E2I F;  5M5W F;  3H3V F;  3HOX F;  4BY1 F;  4A93 F;  4G7O E;  5M5Y E;  5D4C E;  4BXX E;  4LJZ E;  3WOD E;  1I50 F;  4G7H E;  5BYH E;  3HOW F;  4MQ9 E;  1I6V E;  4AYB H;  2WAQ K;  4Q5S E;  5M3F E;  4A3J E;  5M5W E;  4A3I F;  3HOX E;  4KMU E;  4A93 E;  3HOU F;  3S16 F;  1TWA F;  5IPL E;  4ZH4 E;  1I50 E;  5D4E E;  1DZF A;  3HOW E;  3S2D F;  3I4M E;  2O5I E;  3PO3 E;  4A3I E;  2B63 F;  2NVQ E;  4A3E F;  5C4X F;  4AYB K;  3HOU E;  2WB1 H;  1QKL A;  4KN7 E;  4LK1 E;  2JA8 F;  3S16 E;  4A3B F;  4QIW H;  1R9T F;  4BBR F;  4A3L F;  2R92 F;  4C3H E;  3GTL F;  3S2D E;  4A3D F;  2CW0 E;  1K83 F;  3S15 F;  4XLN E;  4LLG E;  3HOZ F;  5C4X E;  5IP7 E;  3GTJ E;  4OIQ E;  2JA8 E;  2R93 F;  4Q4Z E;  2JA6 E;  3FKI F;  4A3B E;  5IYD F;  4BBR E;  3HKZ H;  2NVY F; 
#chains in the Genus database with same CATH homology
 3S15 E;  1EIK A;  2R93 E;  3FKI E;  2E2I E;  4BY1 E;  5IYD E;  1K83 E;  2NVY E;  2JA7 E;  2NVT E;  5IP9 E;  4BBS E;  5M3M E;  1TWC E;  1TWG E;  3S1N E;  4A3M E;  2E2H E;  4C2M E;  2YU9 E;  3GTK E;  1TWA E;  3M3Y E;  5M5X E;  3GTG E;  2B63 E;  4A3E E;  1WCM E;  3S1R E;  2PMZ H;  3GTO E;  4A3C E;  4Y52 E;  2R92 E;  3GTL E;  4A3D E;  3GTP E;  3HOZ E;  3H0G E;  3RZD E;  3GTQ E;  4A3G E;  4Y7N E;  5C3E E;  3PO2 E;  5C4J E;  5C44 E;  2Y0S H;  3M4O E;  1TWF E;  3S14 E;  1TWH E;  4A3K E;  4X6A E;  4A3F E;  2R7Z E;  5FLM E;  2VUM E;  1Y1W E;  3RZO E;  3S17 E;  3S2H E;  3K7A E;  1I3Q E;  3HOY E;  1Y1V E;  1SFO E;  3S1M E;  5IYC E;  4C3J E;  4BY7 E;  3HOV E;  2E2J E;  5IYB E;  5FJ8 E;  4A3L E;  4C3I E;  3I4N E;  2JA5 E;  3S1Q E;  2WAQ H;  3CQZ E;  1I6H E;  2NVX E;  3GTM E;  3H3V F;  5M5Y E;  4BXX E;  4AYB H;  5M3F E;  4A3J E;  4A93 E;  5M5W E;  3HOX E;  1I50 E;  1DZF A;  3HOW E;  3I4M E;  3PO3 E;  4A3I E;  2NVQ E;  3HOU E;  2WB1 H;  3S16 E;  4QIW H;  4C3H E;  3S2D E;  5C4X E;  5IP7 E;  3GTJ E;  2JA8 E;  2JA6 E;  4A3B E;  1R9T E;  4BBR E;  3HKZ H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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