1EMWA

Solution structure of the ribosomal protein s16 from thermus thermophilus
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
88
structure length
88
Chain Sequence
MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQEAREGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords S16 RIBOSOMAL PROTEIN
publication title Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 12
structure length 88
sequence length 88
ec nomenclature
pdb deposition date 2000-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00886 Ribosomal_S16 Ribosomal protein S16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1320.10 Alpha Beta 2-Layer Sandwich S16 Ribosomal Protein; Chain: A; S16 Ribosomal Protein; Chain: A; 1emwA00
4B3MP 5LMNP 4KHPP 4DR6P 4DR5P 4NXNP 2HHHP 1I94P 2UUCP 5LMUP 2ZM6P 4B3SP 4JV5P 5BR8P 5IWAP 2UUAP 1FJGP 3OTOP 4LF7P 1HR0P 4DR7P 4JI7P 2VQFP 4AQYP 4DR2P 4LF8P 4DR3P 1IBMP 4X64P 1N34P 1HNXP 4YHHP 2VQEP 4X62P 4DV2P 1J5EP 4GKKP 4JI1P 1N33P 4DR1P 1XMQP 1N36P 3BN0A 4JI6P 4YY3P 4LFCP 4DV4P 4JI0P 1HNZP 4X65P 3T1HP 4JI3P 1XNRP 4B3RP 4LFAP 2UUBP 1XNQP 2UU9P 4DV6P 2UXDP 1N32P 4K0KP 4LF9P 5AJ3P 1HNWP 2UXBP 4DV5P 2F4VP 1EMWA 2UXCP 4DV7P 1XMOP 3T1YP 4GKJP 4LF4P 4NXMP 1IBKP 4JI5P 1IBLP 4JI8P 4DV1P 4X66P 4DV0P 2E5LP 4B3TP 4DV3P 4DUYP 4JI4P 4LFBP 4DR4P 4LF6P 4LF5P 4DUZP 4JYAP 4JI2P 4OX9P
chains in the Genus database with same CATH superfamily
4B3MP 5LMNP 4KHPP 4DR6P 4DR5P 4NXNP 2HHHP 1I94P 2UUCP 5LMUP 2ZM6P 4B3SP 4JV5P 5BR8P 5IWAP 2UUAP 1FJGP 3OTOP 4LF7P 1HR0P 4DR7P 4JI7P 2VQFP 4AQYP 4DR2P 4LF8P 4DR3P 1IBMP 4X64P 1N34P 1HNXP 4YHHP 2VQEP 4X62P 4DV2P 1J5EP 4GKKP 4JI1P 1N33P 4DR1P 1XMQP 1N36P 3BN0A 4JI6P 4YY3P 4LFCP 4DV4P 4JI0P 1HNZP 4X65P 3T1HP 4JI3P 1XNRP 4B3RP 4LFAP 2UUBP 1XNQP 2UU9P 4DV6P 2UXDP 1N32P 4K0KP 4LF9P 5AJ3P 1HNWP 2UXBP 4DV5P 2F4VP 1EMWA 2UXCP 4DV7P 1XMOP 3T1YP 4GKJP 4LF4P 4NXMP 1IBKP 4JI5P 1IBLP 4JI8P 4DV1P 4X66P 4DV0P 2E5LP 4B3TP 4DV3P 4DUYP 4JI4P 4LFBP 4DR4P 4LF6P 4LF5P 4DUZP 4JYAP 4JI2P 4OX9P
chains in the Genus database with same CATH topology
4B3MP 5LMNP 4KHPP 4DR6P 4DR5P 4NXNP 2HHHP 1I94P 2UUCP 5LMUP 2ZM6P 4B3SP 4JV5P 5BR8P 5IWAP 2UUAP 1FJGP 3OTOP 4LF7P 1HR0P 4DR7P 4JI7P 2VQFP 4AQYP 4DR2P 4LF8P 4DR3P 1IBMP 4X64P 1N34P 1HNXP 4YHHP 2VQEP 4X62P 4DV2P 1J5EP 4GKKP 4JI1P 1N33P 4DR1P 1XMQP 1N36P 3BN0A 4JI6P 4YY3P 4LFCP 4DV4P 4JI0P 1HNZP 4X65P 3T1HP 4JI3P 1XNRP 4B3RP 4LFAP 2UUBP 1XNQP 2UU9P 4DV6P 2UXDP 1N32P 4K0KP 4LF9P 5AJ3P 1HNWP 2UXBP 4DV5P 2F4VP 1EMWA 2UXCP 4DV7P 1XMOP 3T1YP 4GKJP 4LF4P 4NXMP 1IBKP 4JI5P 1IBLP 4JI8P 4DV1P 4X66P 4DV0P 2E5LP 4B3TP 4DV3P 4DUYP 4JI4P 4LFBP 4DR4P 4LF6P 4LF5P 4DUZP 4JYAP 4JI2P 4OX9P
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B3M P;  5LMN P;  4KHP P;  4DR6 P;  4DR5 P;  4NXN P;  2HHH P;  1I94 P;  2UUC P;  5LMU P;  2ZM6 P;  4B3S P;  4JV5 P;  5BR8 P;  5IWA P;  2UUA P;  1FJG P;  3OTO P;  4LF7 P;  1HR0 P;  4DR7 P;  4JI7 P;  2VQF P;  4AQY P;  4DR2 P;  4LF8 P;  4DR3 P;  1IBM P;  4X64 P;  1N34 P;  1HNX P;  4YHH P;  2VQE P;  4X62 P;  4DV2 P;  1J5E P;  4GKK P;  4JI1 P;  1N33 P;  4DR1 P;  1XMQ P;  1N36 P;  3BN0 A;  4JI6 P;  4YY3 P;  4LFC P;  4DV4 P;  4JI0 P;  1HNZ P;  4X65 P;  3T1H P;  4JI3 P;  1XNR P;  4B3R P;  4LFA P;  2UUB P;  1XNQ P;  2UU9 P;  4DV6 P;  2UXD P;  1N32 P;  4K0K P;  4LF9 P;  5AJ3 P;  1HNW P;  2UXB P;  4DV5 P;  2F4V P;  1EMW A;  2UXC P;  4DV7 P;  1XMO P;  3T1Y P;  4GKJ P;  4LF4 P;  4NXM P;  1IBK P;  4JI5 P;  1IBL P;  4JI8 P;  4DV1 P;  4X66 P;  4DV0 P;  2E5L P;  4B3T P;  4DV3 P;  4DUY P;  4JI4 P;  4LFB P;  4DR4 P;  4LF6 P;  4LF5 P;  4DUZ P;  4JYA P;  4JI2 P;  4OX9 P; 
#chains in the Genus database with same CATH topology
 4B3M P;  5LMN P;  4KHP P;  4DR6 P;  4DR5 P;  4NXN P;  2HHH P;  1I94 P;  2UUC P;  5LMU P;  2ZM6 P;  4B3S P;  4JV5 P;  5BR8 P;  5IWA P;  2UUA P;  1FJG P;  3OTO P;  4LF7 P;  1HR0 P;  4DR7 P;  4JI7 P;  2VQF P;  4AQY P;  4DR2 P;  4LF8 P;  4DR3 P;  1IBM P;  4X64 P;  1N34 P;  1HNX P;  4YHH P;  2VQE P;  4X62 P;  4DV2 P;  1J5E P;  4GKK P;  4JI1 P;  1N33 P;  4DR1 P;  1XMQ P;  1N36 P;  3BN0 A;  4JI6 P;  4YY3 P;  4LFC P;  4DV4 P;  4JI0 P;  1HNZ P;  4X65 P;  3T1H P;  4JI3 P;  1XNR P;  4B3R P;  4LFA P;  2UUB P;  1XNQ P;  2UU9 P;  4DV6 P;  2UXD P;  1N32 P;  4K0K P;  4LF9 P;  5AJ3 P;  1HNW P;  2UXB P;  4DV5 P;  2F4V P;  1EMW A;  2UXC P;  4DV7 P;  1XMO P;  3T1Y P;  4GKJ P;  4LF4 P;  4NXM P;  1IBK P;  4JI5 P;  1IBL P;  4JI8 P;  4DV1 P;  4X66 P;  4DV0 P;  2E5L P;  4B3T P;  4DV3 P;  4DUY P;  4JI4 P;  4LFB P;  4DR4 P;  4LF6 P;  4LF5 P;  4DUZ P;  4JYA P;  4JI2 P;  4OX9 P; 
#chains in the Genus database with same CATH homology
 4B3M P;  5LMN P;  4KHP P;  4DR6 P;  4DR5 P;  4NXN P;  2HHH P;  1I94 P;  2UUC P;  5LMU P;  2ZM6 P;  4B3S P;  4JV5 P;  5BR8 P;  5IWA P;  2UUA P;  1FJG P;  3OTO P;  4LF7 P;  1HR0 P;  4DR7 P;  4JI7 P;  2VQF P;  4AQY P;  4DR2 P;  4LF8 P;  4DR3 P;  1IBM P;  4X64 P;  1N34 P;  1HNX P;  4YHH P;  2VQE P;  4X62 P;  4DV2 P;  1J5E P;  4GKK P;  4JI1 P;  1N33 P;  4DR1 P;  1XMQ P;  1N36 P;  3BN0 A;  4JI6 P;  4YY3 P;  4LFC P;  4DV4 P;  4JI0 P;  1HNZ P;  4X65 P;  3T1H P;  4JI3 P;  1XNR P;  4B3R P;  4LFA P;  2UUB P;  1XNQ P;  2UU9 P;  4DV6 P;  2UXD P;  1N32 P;  4K0K P;  4LF9 P;  5AJ3 P;  1HNW P;  2UXB P;  4DV5 P;  2F4V P;  1EMW A;  2UXC P;  4DV7 P;  1XMO P;  3T1Y P;  4GKJ P;  4LF4 P;  4NXM P;  1IBK P;  4JI5 P;  1IBL P;  4JI8 P;  4DV1 P;  4X66 P;  4DV0 P;  2E5L P;  4B3T P;  4DV3 P;  4DUY P;  4JI4 P;  4LFB P;  4DR4 P;  4LF6 P;  4LF5 P;  4DUZ P;  4JYA P;  4JI2 P;  4OX9 P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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