1EOOA

Ecorv bound to cognate dna
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
244
structure length
244
Chain Sequence
SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIYRGRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA (5'-D(*GP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*C)-3')
publication title Crystallographic snapshots along a protein-induced DNA-bending pathway.
pubmed doi rcsb
source organism Escherichia coli
total genus 78
structure length 244
sequence length 244
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2000-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09233 Endonuc-EcoRV Restriction endonuclease EcoRV
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.600.10 Alpha Beta 3-Layer(aba) Sandwich ECO RV Endonuclease; Chain A DNA mismatch repair MutH/Restriction endonuclease, type II 1eooA00
2B0DA 1SX5A 1RVAA 3E44A 2REUA 2B0EA 1KC6A 1BUAA 1B97A 1AZ3A 1EO3A 2AZOA 3E41A 1B95A 1RVCA 1EO4A 2GIEA 1AZ4A 1IAWA 1BSUA 1SUZA 2AORA 2AOQA 2RVEA 3E45A 1EOPA 3E43A 1AZOA 2AUDA 4PXGA 1EV7A 1TX3A 3E3YA 2GIJA 2GIGA 3EBCA 1B96A 1XHVA 5HLKA 3E40A 4RVEA 1BSSA 1STXA 1RV5A 1TW8A 3E42A 1SX8A 2GIIA 2GIHA 1B94A 1EOOA 1RVBA 2GE5A 1RVEA 1BGBA 1EONA 1AZ0A 5F8AA 1XHUA
chains in the Genus database with same CATH superfamily
2B0DA 1SX5A 3NDHA 1RVAA 3E44A 2REUA 2B0EA 1KC6A 1BUAA 1B97A 1AZ3A 1EO3A 2AZOA 3E41A 1B95A 1RVCA 1EO4A 2GIEA 1AZ4A 1IAWA 1BSUA 1SUZA 2AORA 2AOQA 2RVEA 3E45A 1EOPA 3E43A 1AZOA 2AUDA 4PXGA 1EV7A 2EZVA 1TX3A 3E3YA 2GIJA 2GIGA 3EBCA 1B96A 1XHVA 5HLKA 2F03A 3E40A 4RVEA 1BSSA 1STXA 1DMUA 1RV5A 1TW8A 3E42A 1SX8A 2GIIA 2GIHA 1B94A 1EOOA 1RVBA 2GE5A 1RVEA 1BGBA 1EONA 1AZ0A 5F8AA 1XHUA
chains in the Genus database with same CATH topology
2B0DA 1SX5A 1RVAA 3E44A 2REUA 2B0EA 1KC6A 1BUAA 1B97A 1AZ3A 1EO3A 2AZOA 3E41A 1B95A 1RVCA 1EO4A 2GIEA 1AZ4A 1IAWA 1BSUA 1SUZA 2AORA 2AOQA 2RVEA 3E45A 1EOPA 3E43A 1AZOA 2AUDA 4PXGA 1EV7A 1TX3A 3E3YA 2GIJA 2GIGA 3EBCA 1B96A 1XHVA 5HLKA 3E40A 4RVEA 1BSSA 1STXA 1RV5A 1TW8A 3E42A 1SX8A 2GIIA 2GIHA 1B94A 1EOOA 1RVBA 2GE5A 1RVEA 1BGBA 1EONA 1AZ0A 5F8AA 1XHUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B0D A;  1SX5 A;  1RVA A;  3E44 A;  2REU A;  2B0E A;  1KC6 A;  1BUA A;  1B97 A;  1AZ3 A;  1EO3 A;  2AZO A;  3E41 A;  1B95 A;  1RVC A;  1EO4 A;  2GIE A;  1AZ4 A;  1IAW A;  1BSU A;  1SUZ A;  2AOR A;  2AOQ A;  2RVE A;  3E45 A;  1EOP A;  3E43 A;  1AZO A;  2AUD A;  4PXG A;  1EV7 A;  1TX3 A;  3E3Y A;  2GIJ A;  2GIG A;  3EBC A;  1B96 A;  1XHV A;  5HLK A;  3E40 A;  4RVE A;  1BSS A;  1STX A;  1RV5 A;  1TW8 A;  3E42 A;  1SX8 A;  2GII A;  2GIH A;  1B94 A;  1EOO A;  1RVB A;  2GE5 A;  1RVE A;  1BGB A;  1EON A;  1AZ0 A;  5F8A A;  1XHU A; 
#chains in the Genus database with same CATH topology
 2B0D A;  1SX5 A;  3NDH A;  1RVA A;  3E44 A;  2REU A;  2B0E A;  1KC6 A;  1BUA A;  1B97 A;  1AZ3 A;  1EO3 A;  2AZO A;  3E41 A;  1B95 A;  1RVC A;  1EO4 A;  2GIE A;  1AZ4 A;  1IAW A;  1BSU A;  1SUZ A;  2AOR A;  2AOQ A;  2RVE A;  3E45 A;  1EOP A;  3E43 A;  1AZO A;  2AUD A;  4PXG A;  1EV7 A;  2EZV A;  1TX3 A;  3E3Y A;  2GIJ A;  2GIG A;  3EBC A;  1B96 A;  1XHV A;  5HLK A;  2F03 A;  3E40 A;  4RVE A;  1BSS A;  1STX A;  1DMU A;  1RV5 A;  1TW8 A;  3E42 A;  1SX8 A;  2GII A;  2GIH A;  1B94 A;  1EOO A;  1RVB A;  2GE5 A;  1RVE A;  1BGB A;  1EON A;  1AZ0 A;  5F8A A;  1XHU A; 
#chains in the Genus database with same CATH homology
 2B0D A;  1SX5 A;  1RVA A;  3E44 A;  2REU A;  2B0E A;  1KC6 A;  1BUA A;  1B97 A;  1AZ3 A;  1EO3 A;  2AZO A;  3E41 A;  1B95 A;  1RVC A;  1EO4 A;  2GIE A;  1AZ4 A;  1IAW A;  1BSU A;  1SUZ A;  2AOR A;  2AOQ A;  2RVE A;  3E45 A;  1EOP A;  3E43 A;  1AZO A;  2AUD A;  4PXG A;  1EV7 A;  1TX3 A;  3E3Y A;  2GIJ A;  2GIG A;  3EBC A;  1B96 A;  1XHV A;  5HLK A;  3E40 A;  4RVE A;  1BSS A;  1STX A;  1RV5 A;  1TW8 A;  3E42 A;  1SX8 A;  2GII A;  2GIH A;  1B94 A;  1EOO A;  1RVB A;  2GE5 A;  1RVE A;  1BGB A;  1EON A;  1AZ0 A;  5F8A A;  1XHU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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