1F22A

A proton-nmr investigation of the fully reduced cytochrome c7 from desulfuromonas acetoxidans. comparison between the reduced and the oxidized forms.
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
68
structure length
68
Chain Sequence
ADVVTYENKKGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME C7
publication title A proton-NMR investigation of the fully reduced cytochrome c7 from Desulfuromonas acetoxidans. Comparison between the reduced and the oxidized forms.
pubmed doi rcsb
total genus 11
structure length 68
sequence length 68
ec nomenclature
pdb deposition date 2000-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02085 Cytochrom_CIII Class III cytochrome C family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 1f22A00
1J0OA 1L3OA 3OV0A 2MZ9A 3CYRA 3OUEA 2N91A 1IT1A 2YXCA 1OFYA 2CY3A 2YYWA 2YYXA 2EWKA 1I77A 1QN0A 1QN1A 2CYMA 1HH5A 2EWIA 1NEWA 3SJ4X 2KMYA 1UP9A 1UPDA 1WADA 2KSUA 1LM2A 1GM4A 2LZZA 4HB6A 2BQ4A 3CARA 2BPNA 2A3MA 1DUWA 2CTHA 2A3PA 1F22A 3CAOA 2EWUA 2LDOA 1Z1NX 1GMBA 1H29A 3SELX 3SJ0X 3BXUA 1GWSA 1EHJA 4HC3A 1KWJA 1J0PA 3OUQA 19HCA 1CZJA 1OS6A 1AQEA 4HAJA 3H33A 4HBFA 2FFNA 1W7OA 3H34A 2CVCA 4HDLA 3SJ1X 2CDVA 3H4NA 1A2IA 1OFWA 1MDVA 2Z47A 1WR5A 4HB8A 1GYOA 1RWJA 2E84A
chains in the Genus database with same CATH superfamily
1J0OA 1L3OA 3OV0A 2MZ9A 3CYRA 3OUEA 2N91A 1IT1A 2YXCA 1OFYA 2CY3A 2YYWA 2YYXA 2EWKA 1I77A 1QN0A 1QN1A 2CYMA 1HH5A 2EWIA 1NEWA 3SJ4X 2KMYA 1UP9A 1UPDA 1WADA 2KSUA 1LM2A 1GM4A 2LZZA 4HB6A 2BQ4A 3CARA 2BPNA 2A3MA 1DUWA 2CTHA 2A3PA 1F22A 3CAOA 2EWUA 2LDOA 1Z1NX 1GMBA 1H29A 3SELX 3SJ0X 3BXUA 1GWSA 1EHJA 4HC3A 1KWJA 1J0PA 3OUQA 19HCA 1CZJA 1OS6A 1AQEA 4HAJA 3H33A 4HBFA 2FFNA 1W7OA 3H34A 2CVCA 4HDLA 3SJ1X 2CDVA 3H4NA 1A2IA 1OFWA 1MDVA 2Z47A 1WR5A 4HB8A 1GYOA 1RWJA 2E84A
chains in the Genus database with same CATH topology
1J0OA 1L3OA 3OV0A 2MZ9A 3CYRA 3OUEA 2N91A 1IT1A 2YXCA 1OFYA 2CY3A 2YYWA 2YYXA 2EWKA 1I77A 1QN0A 1QN1A 2CYMA 1HH5A 2EWIA 1NEWA 3SJ4X 2KMYA 1UP9A 1UPDA 1WADA 2KSUA 1LM2A 1GM4A 2LZZA 4HB6A 2BQ4A 3CARA 2BPNA 2A3MA 1DUWA 2CTHA 2A3PA 1F22A 3CAOA 2EWUA 2LDOA 1Z1NX 1GMBA 1H29A 3SELX 3SJ0X 3BXUA 1GWSA 1EHJA 4HC3A 1KWJA 1J0PA 3OUQA 19HCA 1CZJA 1OS6A 1AQEA 4HAJA 3H33A 4HBFA 2FFNA 1W7OA 3H34A 2CVCA 4HDLA 3SJ1X 2CDVA 3H4NA 1A2IA 1OFWA 1MDVA 2Z47A 1WR5A 4HB8A 1GYOA 1RWJA 2E84A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J0O A;  1L3O A;  3OV0 A;  2MZ9 A;  3CYR A;  3OUE A;  2N91 A;  1IT1 A;  2YXC A;  1OFY A;  2CY3 A;  2YYW A;  2YYX A;  2EWK A;  1I77 A;  1QN0 A;  1QN1 A;  2CYM A;  1HH5 A;  2EWI A;  1NEW A;  3SJ4 X;  2KMY A;  1UP9 A;  1UPD A;  1WAD A;  2KSU A;  1LM2 A;  1GM4 A;  2LZZ A;  4HB6 A;  2BQ4 A;  3CAR A;  2BPN A;  2A3M A;  1DUW A;  2CTH A;  2A3P A;  1F22 A;  3CAO A;  2EWU A;  2LDO A;  1Z1N X;  1GMB A;  1H29 A;  3SEL X;  3SJ0 X;  3BXU A;  1GWS A;  1EHJ A;  4HC3 A;  1KWJ A;  1J0P A;  3OUQ A;  19HC A;  1CZJ A;  1OS6 A;  1AQE A;  4HAJ A;  3H33 A;  4HBF A;  2FFN A;  1W7O A;  3H34 A;  2CVC A;  4HDL A;  3SJ1 X;  2CDV A;  3H4N A;  1A2I A;  1OFW A;  1MDV A;  2Z47 A;  1WR5 A;  4HB8 A;  1GYO A;  1RWJ A;  2E84 A; 
#chains in the Genus database with same CATH topology
 1J0O A;  1L3O A;  3OV0 A;  2MZ9 A;  3CYR A;  3OUE A;  2N91 A;  1IT1 A;  2YXC A;  1OFY A;  2CY3 A;  2YYW A;  2YYX A;  2EWK A;  1I77 A;  1QN0 A;  1QN1 A;  2CYM A;  1HH5 A;  2EWI A;  1NEW A;  3SJ4 X;  2KMY A;  1UP9 A;  1UPD A;  1WAD A;  2KSU A;  1LM2 A;  1GM4 A;  2LZZ A;  4HB6 A;  2BQ4 A;  3CAR A;  2BPN A;  2A3M A;  1DUW A;  2CTH A;  2A3P A;  1F22 A;  3CAO A;  2EWU A;  2LDO A;  1Z1N X;  1GMB A;  1H29 A;  3SEL X;  3SJ0 X;  3BXU A;  1GWS A;  1EHJ A;  4HC3 A;  1KWJ A;  1J0P A;  3OUQ A;  19HC A;  1CZJ A;  1OS6 A;  1AQE A;  4HAJ A;  3H33 A;  4HBF A;  2FFN A;  1W7O A;  3H34 A;  2CVC A;  4HDL A;  3SJ1 X;  2CDV A;  3H4N A;  1A2I A;  1OFW A;  1MDV A;  2Z47 A;  1WR5 A;  4HB8 A;  1GYO A;  1RWJ A;  2E84 A; 
#chains in the Genus database with same CATH homology
 1J0O A;  1L3O A;  3OV0 A;  2MZ9 A;  3CYR A;  3OUE A;  2N91 A;  1IT1 A;  2YXC A;  1OFY A;  2CY3 A;  2YYW A;  2YYX A;  2EWK A;  1I77 A;  1QN0 A;  1QN1 A;  2CYM A;  1HH5 A;  2EWI A;  1NEW A;  3SJ4 X;  2KMY A;  1UP9 A;  1UPD A;  1WAD A;  2KSU A;  1LM2 A;  1GM4 A;  2LZZ A;  4HB6 A;  2BQ4 A;  3CAR A;  2BPN A;  2A3M A;  1DUW A;  2CTH A;  2A3P A;  1F22 A;  3CAO A;  2EWU A;  2LDO A;  1Z1N X;  1GMB A;  1H29 A;  3SEL X;  3SJ0 X;  3BXU A;  1GWS A;  1EHJ A;  4HC3 A;  1KWJ A;  1J0P A;  3OUQ A;  19HC A;  1CZJ A;  1OS6 A;  1AQE A;  4HAJ A;  3H33 A;  4HBF A;  2FFN A;  1W7O A;  3H34 A;  2CVC A;  4HDL A;  3SJ1 X;  2CDV A;  3H4N A;  1A2I A;  1OFW A;  1MDV A;  2Z47 A;  1WR5 A;  4HB8 A;  1GYO A;  1RWJ A;  2E84 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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