1GENA

C-terminal domain of gelatinase a
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
200
structure length
200
Chain Sequence
LGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase (metalloprotease)
molecule keywords GELATINASE A
publication title Crystal structure of the haemopexin-like C-terminal domain of gelatinase A.
pubmed doi rcsb
source organism Homo sapiens
total genus 38
structure length 200
sequence length 200
ec nomenclature ec 3.4.24.24: Gelatinase A.
pdb deposition date 1995-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00045 Hemopexin Hemopexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.110.10.10 Mainly Beta 4 Propeller Hemopexin Hemopexin-like domain 1genA00
4YEHA 4FU4A 1CK7A 1GENA 3BA0A 3OYOA 2CLTA 3LP9A 1FBLA 4HSDA 2MQSA 1RTGA 1SU3A 4OEIA 4AUOA 3S18A 3C7XA 2JXYA 1ITVA 1QJSA 4FVLA 1GXDA 4RT6B 1PEXA 4G0DA 3V6NA 1QHUA 1HXNA 4LL2A
chains in the Genus database with same CATH superfamily
4YEHA 4FU4A 1CK7A 1GENA 3BA0A 3OYOA 2CLTA 3LP9A 1FBLA 4HSDA 2MQSA 1RTGA 1SU3A 4OEIA 4AUOA 3S18A 3C7XA 2JXYA 1ITVA 1QJSA 4FVLA 1GXDA 4RT6B 1PEXA 4G0DA 3V6NA 1QHUA 1HXNA 4LL2A
chains in the Genus database with same CATH topology
4YEHA 4FU4A 1CK7A 1GENA 3BA0A 3OYOA 2CLTA 3LP9A 1FBLA 4HSDA 2MQSA 1RTGA 1SU3A 4OEIA 4AUOA 3S18A 3C7XA 2JXYA 1ITVA 1QJSA 4FVLA 1GXDA 4RT6B 1PEXA 4G0DA 3V6NA 1QHUA 1HXNA 4LL2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YEH A;  4FU4 A;  1CK7 A;  1GEN A;  3BA0 A;  3OYO A;  2CLT A;  3LP9 A;  1FBL A;  4HSD A;  2MQS A;  1RTG A;  1SU3 A;  4OEI A;  4AUO A;  3S18 A;  3C7X A;  2JXY A;  1ITV A;  1QJS A;  4FVL A;  1GXD A;  4RT6 B;  1PEX A;  4G0D A;  3V6N A;  1QHU A;  1HXN A;  4LL2 A; 
#chains in the Genus database with same CATH topology
 4YEH A;  4FU4 A;  1CK7 A;  1GEN A;  3BA0 A;  3OYO A;  2CLT A;  3LP9 A;  1FBL A;  4HSD A;  2MQS A;  1RTG A;  1SU3 A;  4OEI A;  4AUO A;  3S18 A;  3C7X A;  2JXY A;  1ITV A;  1QJS A;  4FVL A;  1GXD A;  4RT6 B;  1PEX A;  4G0D A;  3V6N A;  1QHU A;  1HXN A;  4LL2 A; 
#chains in the Genus database with same CATH homology
 4YEH A;  4FU4 A;  1CK7 A;  1GEN A;  3BA0 A;  3OYO A;  2CLT A;  3LP9 A;  1FBL A;  4HSD A;  2MQS A;  1RTG A;  1SU3 A;  4OEI A;  4AUO A;  3S18 A;  3C7X A;  2JXY A;  1ITV A;  1QJS A;  4FVL A;  1GXD A;  4RT6 B;  1PEX A;  4G0D A;  3V6N A;  1QHU A;  1HXN A;  4LL2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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