1GGRA

Complex of enzyme iiaglc and the histidine-containing phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
150
structure length
150
Chain Sequence
TIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PTS SYSTEM, GLUCOSE-SPECIFIC IIA COMPONENT
publication title Solution structure of the phosphoryl transfer complex between the signal transducing proteins HPr and IIA(glucose) of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system.
pubmed doi rcsb
source organism Escherichia coli
total genus 35
structure length 150
sequence length 150
ec nomenclature ec 2.7.1.69: Transferred entry: 2.7.1.191, 2.7.1.192, 2.7.1.193, 2.7.1.194, 2.7.1.195,
pdb deposition date 2000-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00358 PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.70.10 Mainly Beta Distorted Sandwich Glucose Permease (Domain IIA) Glucose Permease (Domain IIA) 1ggrA00
4RNZA 4ZYBA 2B13A 4RNYA 1AX3A 5KVPA 1GGRA 1F3GA 4QPBA 1GLEF 2B44A 1O2FA 4BH5A 3OURB 4QP5A 3IT5A 1QWYA 3IT7A 3TUFB 1F3ZA 2HSIA 3CSQA 3NYYA 5B0HA 2B0PA 4LXCA 1GLAF 2F3GA 3UZ0B 2GPRA 1GPRA 3SLUA 1GLBF 1GLCF 2MP0B 1GLDF 4JBWM 2GU1A
chains in the Genus database with same CATH superfamily
4RNZA 4ZYBA 2B13A 4RNYA 1AX3A 5KVPA 1GGRA 1F3GA 4QPBA 1GLEF 2B44A 1O2FA 4BH5A 3OURB 4QP5A 3IT5A 1QWYA 3IT7A 3TUFB 1F3ZA 2HSIA 3CSQA 3NYYA 5B0HA 2B0PA 4LXCA 1GLAF 2F3GA 3UZ0B 2GPRA 1GPRA 3SLUA 1GLBF 1GLCF 2MP0B 1GLDF 4JBWM 2GU1A
chains in the Genus database with same CATH topology
4RNZA 4ZYBA 2B13A 4RNYA 1AX3A 5KVPA 1GGRA 1F3GA 4QPBA 1GLEF 2B44A 1O2FA 4BH5A 3OURB 4QP5A 3IT5A 1QWYA 3IT7A 3TUFB 1F3ZA 2HSIA 3CSQA 3NYYA 5B0HA 2B0PA 4LXCA 1GLAF 2F3GA 3UZ0B 2GPRA 1GPRA 3SLUA 1GLBF 1GLCF 2MP0B 1GLDF 4JBWM 2GU1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RNZ A;  4ZYB A;  2B13 A;  4RNY A;  1AX3 A;  5KVP A;  1GGR A;  1F3G A;  4QPB A;  1GLE F;  2B44 A;  1O2F A;  4BH5 A;  3OUR B;  4QP5 A;  3IT5 A;  1QWY A;  3IT7 A;  3TUF B;  1F3Z A;  2HSI A;  3CSQ A;  3NYY A;  5B0H A;  2B0P A;  4LXC A;  1GLA F;  2F3G A;  3UZ0 B;  2GPR A;  1GPR A;  3SLU A;  1GLB F;  1GLC F;  2MP0 B;  1GLD F;  4JBW M;  2GU1 A; 
#chains in the Genus database with same CATH topology
 4RNZ A;  4ZYB A;  2B13 A;  4RNY A;  1AX3 A;  5KVP A;  1GGR A;  1F3G A;  4QPB A;  1GLE F;  2B44 A;  1O2F A;  4BH5 A;  3OUR B;  4QP5 A;  3IT5 A;  1QWY A;  3IT7 A;  3TUF B;  1F3Z A;  2HSI A;  3CSQ A;  3NYY A;  5B0H A;  2B0P A;  4LXC A;  1GLA F;  2F3G A;  3UZ0 B;  2GPR A;  1GPR A;  3SLU A;  1GLB F;  1GLC F;  2MP0 B;  1GLD F;  4JBW M;  2GU1 A; 
#chains in the Genus database with same CATH homology
 4RNZ A;  4ZYB A;  2B13 A;  4RNY A;  1AX3 A;  5KVP A;  1GGR A;  1F3G A;  4QPB A;  1GLE F;  2B44 A;  1O2F A;  4BH5 A;  3OUR B;  4QP5 A;  3IT5 A;  1QWY A;  3IT7 A;  3TUF B;  1F3Z A;  2HSI A;  3CSQ A;  3NYY A;  5B0H A;  2B0P A;  4LXC A;  1GLA F;  2F3G A;  3UZ0 B;  2GPR A;  1GPR A;  3SLU A;  1GLB F;  1GLC F;  2MP0 B;  1GLD F;  4JBW M;  2GU1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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