1H2DA

Ebola virus matrix protein vp40 n-terminal domain in complex with rna (low-resolution vp40[31-212] variant).
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
122
structure length
122
Chain Sequence
VSSAFILEAMVNVISGPKVLMKQIPIWLPLGVADQKTYSFDSTTAAIMLASYTITHFGKATNPLVRVNRLGPGIPDHPLRLLRIGNQAFLQEFVLPPVQLPQYFTFDLTALKLITQPLPAAT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus/viral protein
molecule keywords MATRIX PROTEIN VP40
publication title The Matrix Protein Vp40 from Ebola Virus Octamerizes Into Pore-Like Structures with Specific RNA Binding Properties
pubmed doi rcsb
source organism Ebola virus
total genus 25
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-08-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.20.20 Mainly Beta Distorted Sandwich Topoisomerase I; domain 3 Topoisomerase I; domain 3 1h2dA00
1H2CA 4LD8A 1ES6A 1H2DA 4LDBA 5B0VA 4LDDA 4LDMA 3TCQA
chains in the Genus database with same CATH superfamily
4CHTA 2O59A 4CGYA 4HITA 4LD8A 1H2DA 1D6MA 4HI5A 5B0VA 1CY9A 4G1OA 4D4TA 2VQPA 4RULA 1CYYA 5D5HA 2O5EA 4HIYA 1CY7A 1H2CA 2O5CA 2GAIA 2YKDA 1CY1A 2GAJA 1ECLA 4HIWA 4HIUA 3TCQA 3PX7A 1CY2A 3PWTA 4LP7A 2O54A 1MW8X 4LDDA 4LDMA 1CY4A 1ES6A 4G1GA 2O19A 4HI6A 4LDBA 1CY8A 4V23A 1CY6A 1CY0A 1MW9X 1I7DA 3F1JA 4G1LA
chains in the Genus database with same CATH topology
4HITA 4LD8A 1H2DA 4HI5A 5B0VA 4G1OA 4D4TA 2VQPA 4HIYA 1H2CA 2YKDA 4HIWA 4HIUA 3TCQA 4LP7A 4LDDA 4LDMA 1ES6A 4G1GA 4HI6A 4LDBA 4V23A 3F1JA 4G1LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H2C A;  4LD8 A;  1ES6 A;  1H2D A;  4LDB A;  5B0V A;  4LDD A;  4LDM A;  3TCQ A; 
#chains in the Genus database with same CATH topology
 4CHT A;  2O59 A;  4CGY A;  4HIT A;  4LD8 A;  1H2D A;  1D6M A;  4HI5 A;  5B0V A;  1CY9 A;  4G1O A;  4D4T A;  2VQP A;  4RUL A;  1CYY A;  5D5H A;  2O5E A;  4HIY A;  1CY7 A;  1H2C A;  2O5C A;  2GAI A;  2YKD A;  1CY1 A;  2GAJ A;  1ECL A;  4HIW A;  4HIU A;  3TCQ A;  3PX7 A;  1CY2 A;  3PWT A;  4LP7 A;  2O54 A;  1MW8 X;  4LDD A;  4LDM A;  1CY4 A;  1ES6 A;  4G1G A;  2O19 A;  4HI6 A;  4LDB A;  1CY8 A;  4V23 A;  1CY6 A;  1CY0 A;  1MW9 X;  1I7D A;  3F1J A;  4G1L A; 
#chains in the Genus database with same CATH homology
 4HIT A;  4LD8 A;  1H2D A;  4HI5 A;  5B0V A;  4G1O A;  4D4T A;  2VQP A;  4HIY A;  1H2C A;  2YKD A;  4HIW A;  4HIU A;  3TCQ A;  4LP7 A;  4LDD A;  4LDM A;  1ES6 A;  4G1G A;  4HI6 A;  4LDB A;  4V23 A;  3F1J A;  4G1L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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