1H5PA

Solution structure of the human sp100b sand domain by heteronuclear nmr.
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
95
structure length
95
Chain Sequence
MDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKVTIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Nuclear protein
molecule keywords NUCLEAR AUTOANTIGEN SP100-B
publication title The SAND domain structure defines a novel DNA-binding fold in transcriptional regulation.
pubmed doi rcsb
source organism Homo sapiens
total genus 18
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2001-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01342 SAND SAND domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.390.10 Alpha Beta Roll SAND domain SAND domain-like 1h5pA00
1H5PA 1MR1C 1OQJA 5C4VB 1UFNA
chains in the Genus database with same CATH superfamily
1H5PA 1MR1C 1OQJA 5C4VB 1UFNA
chains in the Genus database with same CATH topology
1H5PA 1MR1C 1OQJA 5C4VB 1UFNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H5P A;  1MR1 C;  1OQJ A;  5C4V B;  1UFN A; 
#chains in the Genus database with same CATH topology
 1H5P A;  1MR1 C;  1OQJ A;  5C4V B;  1UFN A; 
#chains in the Genus database with same CATH homology
 1H5P A;  1MR1 C;  1OQJ A;  5C4V B;  1UFN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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