1H7VA

Rubredoxin from guillardia theta
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
60
structure length
60
Chain Sequence
MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords RUBREDOXIN
publication title Solution structure of a zinc substituted eukaryotic rubredoxin from the cryptomonad alga Guillardia theta.
pubmed doi rcsb
source organism Guillardia theta
total genus 4
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2001-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1h7vA00
5AI2A 7RXNA 1T9PA 1SMMA 2KN9A 1S30A 1RDGA 1BRFA 1RWDA 1R0JA 3KYUA 1QCVA 1YK5A 4AR5A 1BQ9A 1ZRPA 1FHHA 2DSXA 1IROA 6RXNA 4YWLA 3RZTA 4POGA 2HR5A 4K9FA 1E8JA 1BE7A 1LKPA 1RDVA 1NNQA 1B2JA 4YWMA 3PWFA 1S2ZA 1CADA 1QYBA 1LTLA 2PYAA 1VCXA 1LKMA 1B2OA 5IY0A 3PZAA 2MS3A 2M4YA 3SS2A 1BFYA 1B71A 1SMUA 3KYWA 1C09A 4AR3A 2KKDA 1B13A 2V3BB 1R0FA 1T9QA 4AR4A 3KYXA 3RZ6A 5AI3A 1R0GA 1IRNA 1RB9A 4POFA 2LCQA 3RYGA 1CAAA 1IU5A 3KYVA 1LKOA 1RYTA 1T9OA 4ME3A 3MPSA 1YUXA 2PVXA 1YUZA 3A44A 8RXNA 1IU6A 1DVBA 1H7VA 4TPUA 4RXNA 2RDVA 5RXNA 4AR6A 2PVEA 1YV1A 3KYYA 1DX8A 1FHMA 1R0IA 2GMGA 1S24A 2K2DA 1SMWA 1YK4A 1JYBA 2VL6A 3QVDA 1R0HA 1BQ8A 2QL0A
chains in the Genus database with same CATH superfamily
5GAEc 2E2HL 5JVG1 2A69D 1K83L 7RXNA 3S1NL 3LWPB 2M4VA 4TVMA 4AHYA 1Y1VL 1YK5A 2JI3A 4A3ML 1FHHA 6RXNA 4YWLA 4ZN3B 4AHZA 1BE7A 5M3FL 3LWRB 3PWFA 1TWGL 1TWCL 1QYBA 2J9UB 2PPTA 1QQTA 3K35A 2E2IL 2M4YA 3LNLA 4JAFA 2PSMC 5DM71 1B13A 2NVXL 4AR4A 3KYXA 1PFUA 1P7PA 4A3DL 4AI2A 5AI3A 4POFA 3GTLL 4BY7L 1CAAA 1WCML 2C6AA 2CKCA 3P8BA 3KYVA 3MPSA 4A3LL 3A44A 8RXNA 4G6BA 1H7VA 4RXNA 3P2AA 5M3ML 2NVQL 3KYYA 2VUML 1FHMA 1VZIA 4ZN1B 4B8CD 2B5ID 4AI1A 5FLML 5AN9H 3LPEB 5K2ME 1SMWA 3J7Z1 2AYJA 1R0HA 5GAGc 2CKAA 2QL0A 2R93L 2JI1A 3HOZL 1SMMA 2XJPA 1R0JA 3KYUA 1QCVA 4AR5A 2H12A 1ZRPA 3GTPL 5MF6A 5GADc 2DSXA 4A3FL 2L0ZA 4JAEA 4BBSL 4A93L 3S16L 3RZOL 2XJRA 5EIOC 1B2JA 3S2DL 3JR7A 4A3CL 2O5JD 3WWLA 4BY1L 5H1Sc 1VCXA 2JA5L 2WB1P 3ZG6A 2JA8L 2AUSB 2XJUA 5IYCL 3PZAA 1B71A 2A6HD 3GTOL 3CQZL 3S2HL 2KKDA 3S1QL 3GTML 4AYBP 1R0FA 1T9QA 2C6BA 2NVYL 1R0GA 3H99A 1IRNA 4BBRL 2A6ED 5MFPA 5M5YL 3B0AB 5IP9L 5M5XL 1I50L 1IU5A 3PO3L 3B08B 3LWQB 4ME3A 1YUXA 2E2JL 2YU9L 1IW7D 2M6PA 1IU6A 5FJ8L 4AI0A 5RXNA 4AR6A 3H9BA 2A68D 1YV1A 3LWVB 4A3JL 3S1ML 2R92L 3M4OL 2RFKB 5C4XL 4LHNA 3I4ML 4X6AL 3MSUA 1TWAL 3WWNB 1PFYA 5AI2A 3HAXC 1T9PA 4V196 3FKIL 1RDGA 4C3JL 1BRFA 1R9TL 1PZXA 3PIP1 3S15L 3GTQL 1BQ9A 1RYQA 1IROA 2WAQP 3GTGL 1TWFL 3RZTA 4POGA 5GAHc 4K9FA 5M5WL 1E8JA 1RDVA 2APOB 3M3YL 1S2ZA 5EINC 2V0FA 1PFWA 1LTLA 2BE5D 3PIO1 5IY0A 3FDJA 4C3HL 2MS3A 3SS2A 4E6YA 1BFYA 1SMUA 3MQKB 3KYWA 4AHWA 2XJVA 4AR3A 5DM61 5C44L 2XJSA 2V3BB 4Y52L 3J7Y1 2R7ZL 1RB9A 1NXGA 3HOUL 3RYGA 5JVH1 1LKOA 1RYTA 1T9OA 2PMZP 2PVXA 1YUZA 2Z3RB 2XJTA 4Y7NL 3LWOB 1ODHA 2JI2A 4LHLA 4TPUA 4BXXL 1TWHL 2Z3QB 1OWCA 1I6HL 4QIWP 2M6OA 1DX8A 3QQCE 2Y0SP 2B63L 1R0IA 4XXBB 4JADA 1S24A 2K2DA 2V0EA 4A3BL 1SFOL 4U671 1YK4A 3PO2L 1I3QL 1BQ8A 3HKZP 3RZDL 2HVYC 3PL5A 2KN9A 1S30A 2NYDA 4XGHA 1Y1WL 1RWDA 1NXEA 3H3VM 3S17L 1OWBA 5IYDL 4A3GL 4A3EL 2HR5A 1LKPA 1NNQA 3K7AL 2JA6L 4YWMA 3HOYL 1CADA 2NVTL 3HOVL 2PYAA 4UY81 2JA7L 3VPBE 3I4NL 3HJWB 1LKMA 5MGNA 1B2OA 1VZGA 5C3EL 2AQCA 4A3IL 4WFN1 5IP7L 1C09A 2ERSA 3HOXL 3RZ6A 4JAGA 5IYBL 1VZHA 4A3KL 2LCQA 4GS7D 2CR8A 3H97A 2EY4E 4C3IL 1Z92B 2XJQA 5C4JL 3H0GL 3GTJL 3S14L 3HOWL 1DVBA 2RDVA 3IU3I 3PKJA 2PVEA 4AHXA 1F4LA 1WJVA 3S1RL 2ZIXA 4C2M1 5MLC3 3GTKL 4AI3A 3HJYB 2GMGA 3PKIA 5MFZA 1PFVA 3H9CA 1JYBA 2ERJA 2VL6A 3QVDA 3NFPI
chains in the Genus database with same CATH topology
3WWNB 5GAEc 5JVG1 2A69D 2JI1A 5AI2A 7RXNA 1T9PA 1SMMA 4V196 2KN9A 1S30A 2M4VA 2NYDA 2XJPA 4XGHA 4TVMA 1RDGA 1BRFA 1RWDA 1NXEA 3KYUA 1R0JA 4AHYA 1QCVA 1YK5A 3PIP1 4AR5A 2JI3A 1BQ9A 2H12A 1ZRPA 1RYQA 1FHHA 5GADc 2DSXA 5MF6A 1OWBA 2L0ZA 1IROA 4JAEA 6RXNA 4YWLA 4ZN3B 4AHZA 3RZTA 4POGA 2HR5A 5GAHc 4K9FA 2XJRA 1E8JA 1BE7A 1LKPA 1RDVA 1NNQA 5EIOC 1B2JA 4YWMA 3PWFA 1S2ZA 5EINC 1CADA 2O5JD 2V0FA 3WWLA 1QYBA 1LTLA 2PYAA 2BE5D 1VCXA 5H1Sc 4UY81 2J9UB 3VPBE 2PPTA 3ZG6A 3PIO1 1LKMA 5MGNA 1B2OA 1VZGA 3K35A 5IY0A 2XJUA 3PZAA 4WFN1 2MS3A 2M4YA 3LNLA 3SS2A 4E6YA 1BFYA 4JAFA 1B71A 1SMUA 2PSMC 3KYWA 2A6HD 4AHWA 1C09A 2XJVA 4AR3A 5DM71 2ERSA 5DM61 2KKDA 1B13A 2XJSA 2V3BB 1R0FA 1T9QA 4AR4A 3KYXA 2C6BA 3J7Y1 3RZ6A 4JAGA 1VZHA 4AI2A 5AI3A 1R0GA 1IRNA 1RB9A 1NXGA 4POFA 2LCQA 3RYGA 4GS7D 1CAAA 2C6AA 2A6ED 5MFPA 3B0AB 2CR8A 5JVH1 2CKCA 3P8BA 1IU5A 3KYVA 3B08B 1LKOA 1RYTA 1T9OA 4ME3A 1Z92B 3MPSA 1YUXA 2XJQA 2PVXA 1YUZA 1IW7D 2XJTA 2Z3RB 2M6PA 3A44A 8RXNA 4G6BA 1IU6A 1ODHA 1DVBA 1H7VA 2JI2A 4LHLA 4TPUA 4RXNA 4AI0A 2RDVA 3IU3I 5RXNA 3P2AA 3PKJA 4AR6A 2Z3QB 2PVEA 1OWCA 4AHXA 2A68D 1WJVA 1YV1A 3KYYA 2M6OA 1DX8A 1FHMA 2ZIXA 1VZIA 4ZN1B 3QQCE 4B8CD 5MLC3 2B5ID 4AI1A 5AN9H 3LPEB 5K2ME 4AI3A 1R0IA 4XXBB 2GMGA 4JADA 1S24A 2K2DA 2V0EA 1SMWA 3PKIA 5MFZA 4LHNA 4U671 3J7Z1 1YK4A 3MSUA 1JYBA 2AYJA 2ERJA 2VL6A 3QVDA 1BQ8A 1R0HA 5GAGc 2CKAA 2QL0A 3NFPI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AI2 A;  7RXN A;  1T9P A;  1SMM A;  2KN9 A;  1S30 A;  1RDG A;  1BRF A;  1RWD A;  1R0J A;  3KYU A;  1QCV A;  1YK5 A;  4AR5 A;  1BQ9 A;  1ZRP A;  1FHH A;  2DSX A;  1IRO A;  6RXN A;  4YWL A;  3RZT A;  4POG A;  2HR5 A;  4K9F A;  1E8J A;  1BE7 A;  1LKP A;  1RDV A;  1NNQ A;  1B2J A;  4YWM A;  3PWF A;  1S2Z A;  1CAD A;  1QYB A;  1LTL A;  2PYA A;  1VCX A;  1LKM A;  1B2O A;  5IY0 A;  3PZA A;  2MS3 A;  2M4Y A;  3SS2 A;  1BFY A;  1B71 A;  1SMU A;  3KYW A;  1C09 A;  4AR3 A;  2KKD A;  1B13 A;  2V3B B;  1R0F A;  1T9Q A;  4AR4 A;  3KYX A;  3RZ6 A;  5AI3 A;  1R0G A;  1IRN A;  1RB9 A;  4POF A;  2LCQ A;  3RYG A;  1CAA A;  1IU5 A;  3KYV A;  1LKO A;  1RYT A;  1T9O A;  4ME3 A;  3MPS A;  1YUX A;  2PVX A;  1YUZ A;  3A44 A;  8RXN A;  1IU6 A;  1DVB A;  1H7V A;  4TPU A;  4RXN A;  2RDV A;  5RXN A;  4AR6 A;  2PVE A;  1YV1 A;  3KYY A;  1DX8 A;  1FHM A;  1R0I A;  2GMG A;  1S24 A;  2K2D A;  1SMW A;  1YK4 A;  1JYB A;  2VL6 A;  3QVD A;  1R0H A;  1BQ8 A;  2QL0 A; 
#chains in the Genus database with same CATH topology
 5GAE c;  2E2H L;  5JVG 1;  2A69 D;  1K83 L;  7RXN A;  3S1N L;  3LWP B;  2M4V A;  4TVM A;  4AHY A;  1Y1V L;  1YK5 A;  2JI3 A;  4A3M L;  1FHH A;  6RXN A;  4YWL A;  4ZN3 B;  4AHZ A;  1BE7 A;  5M3F L;  3LWR B;  3PWF A;  1TWG L;  1TWC L;  1QYB A;  2J9U B;  2PPT A;  1QQT A;  3K35 A;  2E2I L;  2M4Y A;  3LNL A;  4JAF A;  2PSM C;  5DM7 1;  1B13 A;  2NVX L;  4AR4 A;  3KYX A;  1PFU A;  1P7P A;  4A3D L;  4AI2 A;  5AI3 A;  4POF A;  3GTL L;  4BY7 L;  1CAA A;  1WCM L;  2C6A A;  2CKC A;  3P8B A;  3KYV A;  3MPS A;  4A3L L;  3A44 A;  8RXN A;  4G6B A;  1H7V A;  4RXN A;  3P2A A;  5M3M L;  2NVQ L;  3KYY A;  2VUM L;  1FHM A;  1VZI A;  4ZN1 B;  4B8C D;  2B5I D;  4AI1 A;  5FLM L;  5AN9 H;  3LPE B;  5K2M E;  1SMW A;  3J7Z 1;  2AYJ A;  1R0H A;  5GAG c;  2CKA A;  2QL0 A;  2R93 L;  2JI1 A;  3HOZ L;  1SMM A;  2XJP A;  1R0J A;  3KYU A;  1QCV A;  4AR5 A;  2H12 A;  1ZRP A;  3GTP L;  5MF6 A;  5GAD c;  2DSX A;  4A3F L;  2L0Z A;  4JAE A;  4BBS L;  4A93 L;  3S16 L;  3RZO L;  2XJR A;  5EIO C;  1B2J A;  3S2D L;  3JR7 A;  4A3C L;  2O5J D;  3WWL A;  4BY1 L;  5H1S c;  1VCX A;  2JA5 L;  2WB1 P;  3ZG6 A;  2JA8 L;  2AUS B;  2XJU A;  5IYC L;  3PZA A;  1B71 A;  2A6H D;  3GTO L;  3CQZ L;  3S2H L;  2KKD A;  3S1Q L;  3GTM L;  4AYB P;  1R0F A;  1T9Q A;  2C6B A;  2NVY L;  1R0G A;  3H99 A;  1IRN A;  4BBR L;  2A6E D;  5MFP A;  5M5Y L;  3B0A B;  5IP9 L;  5M5X L;  1I50 L;  1IU5 A;  3PO3 L;  3B08 B;  3LWQ B;  4ME3 A;  1YUX A;  2E2J L;  2YU9 L;  1IW7 D;  2M6P A;  1IU6 A;  5FJ8 L;  4AI0 A;  5RXN A;  4AR6 A;  3H9B A;  2A68 D;  1YV1 A;  3LWV B;  4A3J L;  3S1M L;  2R92 L;  3M4O L;  2RFK B;  5C4X L;  4LHN A;  3I4M L;  4X6A L;  3MSU A;  1TWA L;  3WWN B;  1PFY A;  5AI2 A;  3HAX C;  1T9P A;  4V19 6;  3FKI L;  1RDG A;  4C3J L;  1BRF A;  1R9T L;  1PZX A;  3PIP 1;  3S15 L;  3GTQ L;  1BQ9 A;  1RYQ A;  1IRO A;  2WAQ P;  3GTG L;  1TWF L;  3RZT A;  4POG A;  5GAH c;  4K9F A;  5M5W L;  1E8J A;  1RDV A;  2APO B;  3M3Y L;  1S2Z A;  5EIN C;  2V0F A;  1PFW A;  1LTL A;  2BE5 D;  3PIO 1;  5IY0 A;  3FDJ A;  4C3H L;  2MS3 A;  3SS2 A;  4E6Y A;  1BFY A;  1SMU A;  3MQK B;  3KYW A;  4AHW A;  2XJV A;  4AR3 A;  5DM6 1;  5C44 L;  2XJS A;  2V3B B;  4Y52 L;  3J7Y 1;  2R7Z L;  1RB9 A;  1NXG A;  3HOU L;  3RYG A;  5JVH 1;  1LKO A;  1RYT A;  1T9O A;  2PMZ P;  2PVX A;  1YUZ A;  2Z3R B;  2XJT A;  4Y7N L;  3LWO B;  1ODH A;  2JI2 A;  4LHL A;  4TPU A;  4BXX L;  1TWH L;  2Z3Q B;  1OWC A;  1I6H L;  4QIW P;  2M6O A;  1DX8 A;  3QQC E;  2Y0S P;  2B63 L;  1R0I A;  4XXB B;  4JAD A;  1S24 A;  2K2D A;  2V0E A;  4A3B L;  1SFO L;  4U67 1;  1YK4 A;  3PO2 L;  1I3Q L;  1BQ8 A;  3HKZ P;  3RZD L;  2HVY C;  3PL5 A;  2KN9 A;  1S30 A;  2NYD A;  4XGH A;  1Y1W L;  1RWD A;  1NXE A;  3H3V M;  3S17 L;  1OWB A;  5IYD L;  4A3G L;  4A3E L;  2HR5 A;  1LKP A;  1NNQ A;  3K7A L;  2JA6 L;  4YWM A;  3HOY L;  1CAD A;  2NVT L;  3HOV L;  2PYA A;  4UY8 1;  2JA7 L;  3VPB E;  3I4N L;  3HJW B;  1LKM A;  5MGN A;  1B2O A;  1VZG A;  5C3E L;  2AQC A;  4A3I L;  4WFN 1;  5IP7 L;  1C09 A;  2ERS A;  3HOX L;  3RZ6 A;  4JAG A;  5IYB L;  1VZH A;  4A3K L;  2LCQ A;  4GS7 D;  2CR8 A;  3H97 A;  2EY4 E;  4C3I L;  1Z92 B;  2XJQ A;  5C4J L;  3H0G L;  3GTJ L;  3S14 L;  3HOW L;  1DVB A;  2RDV A;  3IU3 I;  3PKJ A;  2PVE A;  4AHX A;  1F4L A;  1WJV A;  3S1R L;  2ZIX A;  4C2M 1;  5MLC 3;  3GTK L;  4AI3 A;  3HJY B;  2GMG A;  3PKI A;  5MFZ A;  1PFV A;  3H9C A;  1JYB A;  2ERJ A;  2VL6 A;  3QVD A;  3NFP I; 
#chains in the Genus database with same CATH homology
 3WWN B;  5GAE c;  5JVG 1;  2A69 D;  2JI1 A;  5AI2 A;  7RXN A;  1T9P A;  1SMM A;  4V19 6;  2KN9 A;  1S30 A;  2M4V A;  2NYD A;  2XJP A;  4XGH A;  4TVM A;  1RDG A;  1BRF A;  1RWD A;  1NXE A;  3KYU A;  1R0J A;  4AHY A;  1QCV A;  1YK5 A;  3PIP 1;  4AR5 A;  2JI3 A;  1BQ9 A;  2H12 A;  1ZRP A;  1RYQ A;  1FHH A;  5GAD c;  2DSX A;  5MF6 A;  1OWB A;  2L0Z A;  1IRO A;  4JAE A;  6RXN A;  4YWL A;  4ZN3 B;  4AHZ A;  3RZT A;  4POG A;  2HR5 A;  5GAH c;  4K9F A;  2XJR A;  1E8J A;  1BE7 A;  1LKP A;  1RDV A;  1NNQ A;  5EIO C;  1B2J A;  4YWM A;  3PWF A;  1S2Z A;  5EIN C;  1CAD A;  2O5J D;  2V0F A;  3WWL A;  1QYB A;  1LTL A;  2PYA A;  2BE5 D;  1VCX A;  5H1S c;  4UY8 1;  2J9U B;  3VPB E;  2PPT A;  3ZG6 A;  3PIO 1;  1LKM A;  5MGN A;  1B2O A;  1VZG A;  3K35 A;  5IY0 A;  2XJU A;  3PZA A;  4WFN 1;  2MS3 A;  2M4Y A;  3LNL A;  3SS2 A;  4E6Y A;  1BFY A;  4JAF A;  1B71 A;  1SMU A;  2PSM C;  3KYW A;  2A6H D;  4AHW A;  1C09 A;  2XJV A;  4AR3 A;  5DM7 1;  2ERS A;  5DM6 1;  2KKD A;  1B13 A;  2XJS A;  2V3B B;  1R0F A;  1T9Q A;  4AR4 A;  3KYX A;  2C6B A;  3J7Y 1;  3RZ6 A;  4JAG A;  1VZH A;  4AI2 A;  5AI3 A;  1R0G A;  1IRN A;  1RB9 A;  1NXG A;  4POF A;  2LCQ A;  3RYG A;  4GS7 D;  1CAA A;  2C6A A;  2A6E D;  5MFP A;  3B0A B;  2CR8 A;  5JVH 1;  2CKC A;  3P8B A;  1IU5 A;  3KYV A;  3B08 B;  1LKO A;  1RYT A;  1T9O A;  4ME3 A;  1Z92 B;  3MPS A;  1YUX A;  2XJQ A;  2PVX A;  1YUZ A;  1IW7 D;  2XJT A;  2Z3R B;  2M6P A;  3A44 A;  8RXN A;  4G6B A;  1IU6 A;  1ODH A;  1DVB A;  1H7V A;  2JI2 A;  4LHL A;  4TPU A;  4RXN A;  4AI0 A;  2RDV A;  3IU3 I;  5RXN A;  3P2A A;  3PKJ A;  4AR6 A;  2Z3Q B;  2PVE A;  1OWC A;  4AHX A;  2A68 D;  1WJV A;  1YV1 A;  3KYY A;  2M6O A;  1DX8 A;  1FHM A;  2ZIX A;  1VZI A;  4ZN1 B;  3QQC E;  4B8C D;  5MLC 3;  2B5I D;  4AI1 A;  5AN9 H;  3LPE B;  5K2M E;  4AI3 A;  1R0I A;  4XXB B;  2GMG A;  4JAD A;  1S24 A;  2K2D A;  2V0E A;  1SMW A;  3PKI A;  5MFZ A;  4LHN A;  4U67 1;  3J7Z 1;  1YK4 A;  3MSU A;  1JYB A;  2AYJ A;  2ERJ A;  2VL6 A;  3QVD A;  1BQ8 A;  1R0H A;  5GAG c;  2CKA A;  2QL0 A;  3NFP I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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