1HPWA

Structure of a pilin monomer from pseudomonas aeruginosa: implications for the assembly of pili.
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
129
structure length
129
Chain Sequence
ALEGTEFARAQLSEAMTLASGLKTKVSDIFSQDGSCPANTAATAGIEKDTDINGKYVAKVTTGGTAAASGGCTIVATMKASDVATPLRGKTLTLTLGNADKGSYTWACTSNADNKYLPKTCQTATTTTP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Contractile protein
molecule keywords FIMBRIAL PROTEIN
publication title Structure of a pilin monomer from Pseudomonas aeruginosa: implications for the assembly of pili.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 15
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2000-12-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00114 Pilin Pilin (bacterial filament)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.700.10 Alpha Beta 2-Layer Sandwich Glycoprotein, Type 4 Pilin Glycoprotein, Type 4 Pilin 1hpwA00
3SOJA 1X6RA 3FU1A 2KEPA 3GN9A 3G20A 3JYZA 1OQWA 4V1JA 1AY2A 2M7GA 3SOKA 1T92A 3JZZA 1X6YA 1HPWA 2PILA 5JW8A 2PY0A 1QVEA 1X6QA 1X6ZA 2HI2A 1DZOA 1RG0A 1X6PA 4LW9A 1X6XX
chains in the Genus database with same CATH superfamily
3SOJA 1WSCA 1X6RA 3FU1A 2KEPA 3GN9A 3G20A 3JYZA 1ZQ7A 3U9SA 1OQWA 4V1JA 1AY2A 3U9TA 2M7GA 3SOKA 1T92A 3JZZA 1X6YA 1HPWA 2M3KA 2PILA 3N6RA 1VAJA 2PY0A 1QVEA 1X6QA 5JW8A 1X6ZA 2HI2A 1DZOA 1RG0A 1X6PA 4LW9A 1X6XX
chains in the Genus database with same CATH topology
3SOJA 1X6RA 3FU1A 2KEPA 3GN9A 3G20A 3JYZA 3U9SA 1OQWA 4V1JA 1AY2A 3U9TA 2M7GA 3SOKA 1T92A 3JZZA 1X6YA 1HPWA 2M3KA 2PILA 3N6RA 5JW8A 2PY0A 1QVEA 1X6QA 1X6ZA 2HI2A 1DZOA 1RG0A 1X6PA 4LW9A 1X6XX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SOJ A;  1X6R A;  3FU1 A;  2KEP A;  3GN9 A;  3G20 A;  3JYZ A;  1OQW A;  4V1J A;  1AY2 A;  2M7G A;  3SOK A;  1T92 A;  3JZZ A;  1X6Y A;  1HPW A;  2PIL A;  5JW8 A;  2PY0 A;  1QVE A;  1X6Q A;  1X6Z A;  2HI2 A;  1DZO A;  1RG0 A;  1X6P A;  4LW9 A;  1X6X X; 
#chains in the Genus database with same CATH topology
 3SOJ A;  1WSC A;  1X6R A;  3FU1 A;  2KEP A;  3GN9 A;  3G20 A;  3JYZ A;  1ZQ7 A;  3U9S A;  1OQW A;  4V1J A;  1AY2 A;  3U9T A;  2M7G A;  3SOK A;  1T92 A;  3JZZ A;  1X6Y A;  1HPW A;  2M3K A;  2PIL A;  3N6R A;  1VAJ A;  2PY0 A;  1QVE A;  1X6Q A;  5JW8 A;  1X6Z A;  2HI2 A;  1DZO A;  1RG0 A;  1X6P A;  4LW9 A;  1X6X X; 
#chains in the Genus database with same CATH homology
 3SOJ A;  1X6R A;  3FU1 A;  2KEP A;  3GN9 A;  3G20 A;  3JYZ A;  3U9S A;  1OQW A;  4V1J A;  1AY2 A;  3U9T A;  2M7G A;  3SOK A;  1T92 A;  3JZZ A;  1X6Y A;  1HPW A;  2M3K A;  2PIL A;  3N6R A;  5JW8 A;  2PY0 A;  1QVE A;  1X6Q A;  1X6Z A;  2HI2 A;  1DZO A;  1RG0 A;  1X6P A;  4LW9 A;  1X6X X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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