1IMUA

Solution structure of hi0257, a ribosome binding protein
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
107
structure length
107
Chain Sequence
MTLNITSKQMDITPAIREHLEERLAKLGKWQTQLISPHFVLNKVPNGFSVEASIGTPLGNLLASATSDDMYKAINEVEEKLERQLNKLQHKSESRRADERLKDSFEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords HYPOTHETICAL PROTEIN HI0257
publication title Solution structure of HI0257, a bacterial ribosome binding protein.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 22
structure length 107
sequence length 107
ec nomenclature
pdb deposition date 2001-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 1imuA00
4HEIA 2RQLA 1N3GA 3TQMA 1L4SA 2YWQA 1IMUA
chains in the Genus database with same CATH superfamily
2RSMA 4BHBA 1PJTA 2EOOA 4MLQA 1HR0E 4DR5E 2BB8A 2EN1A 1XNQE 3KWRA 1PKPA 1N3GA 1N33E 2CSHA 3THOB 2DLQA 1A1KA 2GHFA 1UHZA 5CFFE 1X6HA 2VE7C 4LF5E 2V89A 2YRHA 4NZVA 3P1XA 3EPKA 5IT9C 2JR1A 1PDAA 2HC5A 4JI3E 2ELZA 4M30A 4DR3E 4OX9E 4R2QA 4LFAE 3C4BA 4JI6E 3L00A 4F9BB 4JI1E 4DR7E 1ZBQA 2MKNA 4ZYEA 2NUFA 2LUQA 4GKJE 2DMYA 3JTZA 5F3WA 5AASA 4R03A 4LU9A 3EQ1A 4DR1E 2YTNA 4R2AA 2V85A 2N3HA 4P7DA 2M9AA 2JPAA 2EMLA 3HPZA 2LT7A 4DV0E 1PJSA 5IWAE 3DJWA 5KL7A 3ZOQB 2EOMA 4X62E 4LFCE 1X5WA 5BR8E 4GKKE 2E72A 4WSPA 2EQ1A 4Q28A 4DUYE 2EN2A 1KYQA 2GPIA 5T6JA 2IHR1 2EPRA 3MSWA 3BGHA 2K7IA 2E5LE 3AV0A 1A1JA 2EN8A 2EPMX 5FLXC 1T4LB 4ZYDA 2LVHA 1L4SA 2D9HA 4WXCA 2YTGA 4P78A 2JP9A 2EM7A 1T38A 5LMNE 3JU0A 1TN9A 2EM6A 3K6QA 2I13A 1ZU1A 1GTKA 2WZOA 2YT4A 2MC6A 2EMCA 2LTRA 2EOJA 4BC9A 1IBLE 1ZR9A 2EM9A 1YYKA 1X6EA 4NHRA 1MEYC 2M7QA 4LF4E 2RS7A 2NUGA 1SR9A 2VQEE 3OTOE 4WFTA 1N34E 2ZM6E 4R2SA 2ADRA 5TSEA 4K0KE 2DSYA 3UK3C 5ADZA 2EOHA 2ODRC 3IWDA 4DKKA 1KJKA 2EMYA 4DR4E 4O4KA 4DUZE 2VF1A 4NXNE 2G7HA 2WCC3 1YUJA 2JXPA 2MDRA 4F54A 2DIXA 2K4VA 2EN7A 1TF6A 1BBGA 2L6MA 1N32E 2J7JA 4HTGA 1N36E 4DV7E 1IQOA 3J7AG 2EM3A 2EL5A 1YYOA 1HNZE 5AC4A 3ADGA 4DV6E 2BBGA 4X9JA 4B3TE 4LF6E 2B9DA 1NEIA 2LO3A 3T1YE 1X6FA 1IMUA 2L33A 4F6MA 2HHHE 2EMHA 1ZBTA 4LF9E 4IS1C 3HQ1A 2NA2A 2L2KB 1AAYA 1G2DC 2B7TA 4KZSA 2WBSA 5KL3A 2LTSA 4BBYA 3VK6A 2L2MA 1EH7A 1SFEA 2VRDA 2RSIA 3BBGA 1A1FA 4M0VA 2YRKA 5AE1A 4M9VC 3LLHA 1X47A 1IQSA 3T1HE 3ADJA 1AH5A 2EPXA 1YFHA 1UBDC 1UILA 2EQ3A 2YTFA 2YTJA 3EPLA 1FJGE 2YU5A 2YTPA 1J26A 4JV5E 1T4NA 2YRMA 4JI7E 5A6BD 3F6HA 1WRJA 3BF2A 2V88A 2EMFA 2FV4B 4ZYGA 4F6NA 1WHQA 2Q8UA 1UN6B 4RHBB 2V83A 5AE2A 2LUPB 4O43A 2LMZA 2UXBE 2EPLX 3H09A 1BBOA 3BIDA 4DV3E 4I8OA 4WYQB 1F2IG 4L5NC 1WXRA 2L3JA 3FIGA 2EM4A 2ENCA 2EOXA 2EN6A 2L8TA 2EORA 2DMIA 1BB8A 2DGCA 1TF3A 4R2CA 5LL6R 5LLQA 1WHNA 2EM8A 2YSOA 2LE2A 2L92A 2EMKA 1J5EE 4MLVA 4BS9A 3TQMA 4GZNC 1Z1BA 4KHPE 1QU6A 4HEIA 4IJDA 4JI0E 2EPKX 1EH8A 5A6JA 2DB2A 4R2PA 2EPNA 4X64E 3KZYA 2M1SA 2NABA 2YU8A 4JI5E 1EKZA 1LLMC 2YTOA 5IV8B 4LFBE 2N3GA 4F9CB 1EH6A 2YPNA 4B3SE 2VQFE 2EM0A 2KOUA 2ODRD 2FTXB 2JVAA 4J8ZA 2DLKA 4L8NA 3EPJA 1A1LA 3VYYA 4R2RA 3OMLA 2EMZA 2V8QB 2JOXA 4R2EA 2E1MA 4FK5C 2UU9E 4BHCA 2CPNA 4WXDA 2YZTA 3MHHC 3C6KA 4AQYE 2F4VE 2KHXA 4O5GA 4YY3E 1YYWA 4B3ME 5A6KA 2EMXA 2RPCA 3JAMC 3J7Yp 1ZAAC 1G2FC 1MGTA 2RQLA 3J81C 1YZ9A 3IWCA 4BC7A 1X48A 1NCSA 4M2ZA 5A6AA 2B3TB 4DV2E 3VYXA 1X3CA 2EOQA 3C6MA 1IBME 2EPOA 2ENAA 2L2NA 2GLIA 2EM2A 3HXLA 1STUA 4NXME 2NUEA 4LTYA 2UUAE 2A25A 2EOYA 2ELYA 1JK2A 2EMBA 4R2DA 2EN3A 1I94E 2JY9A 2FGGA 2RTXA 5KL2A 3KZZA 4X66E 1DI2A 1YSAC 3AUZA 2LV2A 2EPUA 3M99B 2UUCE 4JI2E 2LJUA 2YTEA 4WPYA 2ENHA 1P47A 2EOZA 3HPSA 2LJHA 1A1IA 4WX9A 2EMIA 3ADIA 2EL4A 2I9IA 1XMOE 2JWOA 2N8XA 4X65E 2YTIA 2EE8A 1YPNA 5KL5A 5A2QC 1PJQA 2YSPA 1X49A 4DMIA 2H36X 1T39A 4LF7E 2HGHA 4DR2E 4ZYHA 2DRPA 4O24A 2UXDE 2V86A 3LMLA 1GZ6A 5LMUE 3QG5C 4DV4E 3THNA 2EPZA 4X8WA 1XMQE 3MHSC 2UXCE 2EWLA 1DQ3A 2PRTA 4JYAE 1DGCA 4DR6E 2YWQA 2EOFA 2LRSA 5IXMB 4F2JC 3EPHA 2EMWA 2EOEA 2JYAA 2EPPA 1XNRE 4TUGA 3C4TA 4JI4E 2HJJA 1HNWE 2CTDA 2UUBE 3HTXA 1GQEA 2EMAA 4KWYA 2WBTA 4GEQB 1FKAE 3DF6A 2EQ0A 2MDGA 1T4OA 2M4IA 2JOBA 4DV1E 2EP3A 3ADLA 2YTDA 1A1HA 4DV5E 2V87A 2EOSA 1WJPA 2EM5A 1YUIA 5A69A 1B69A 1JK1A 1QNTA 2RS6A 2B7VA 4BCAA 2EPCA 4YHHE 4TUIA 2F8BA 2EL6A 4BMJA 2EJ4A 4B3RE 2R76A 1RQ0A 1HNXE 2LCEA 5KL6A 2EOIA 4WSGA 2EZ6A 2WBUA 2EN4A 3VHTB 3J80C 5DNYA 2MKDA 2LBSB 2L3CA 4N4RB 1RMDA 3IWBA 1RC7A 4OOGC 5KL4A 2YTQA 2EMGA 4RH8A 2CT1A 2MC5A 1A1GA 2R1FA 1IBKE 4F9AB 4JI8E 5AC5A 3F6GA 4R8OA 5AE3A 4Q35B 4LF8E 2EPAA 5A6BA 1O0WA 3RMPA 2KONA 3ECRA
chains in the Genus database with same CATH topology
4HEIA 2RQLA 1N3GA 3TQMA 1L4SA 2YWQA 1IMUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HEI A;  2RQL A;  1N3G A;  3TQM A;  1L4S A;  2YWQ A;  1IMU A; 
#chains in the Genus database with same CATH topology
 2RSM A;  4BHB A;  1PJT A;  2EOO A;  4MLQ A;  1HR0 E;  4DR5 E;  2BB8 A;  2EN1 A;  1XNQ E;  3KWR A;  1PKP A;  1N3G A;  1N33 E;  2CSH A;  3THO B;  2DLQ A;  1A1K A;  2GHF A;  1UHZ A;  5CFF E;  1X6H A;  2VE7 C;  4LF5 E;  2V89 A;  2YRH A;  4NZV A;  3P1X A;  3EPK A;  5IT9 C;  2JR1 A;  1PDA A;  2HC5 A;  4JI3 E;  2ELZ A;  4M30 A;  4DR3 E;  4OX9 E;  4R2Q A;  4LFA E;  3C4B A;  4JI6 E;  3L00 A;  4F9B B;  4JI1 E;  4DR7 E;  1ZBQ A;  2MKN A;  4ZYE A;  2NUF A;  2LUQ A;  4GKJ E;  2DMY A;  3JTZ A;  5F3W A;  5AAS A;  4R03 A;  4LU9 A;  3EQ1 A;  4DR1 E;  2YTN A;  4R2A A;  2V85 A;  2N3H A;  4P7D A;  2M9A A;  2JPA A;  2EML A;  3HPZ A;  2LT7 A;  4DV0 E;  1PJS A;  5IWA E;  3DJW A;  5KL7 A;  3ZOQ B;  2EOM A;  4X62 E;  4LFC E;  1X5W A;  5BR8 E;  4GKK E;  2E72 A;  4WSP A;  2EQ1 A;  4Q28 A;  4DUY E;  2EN2 A;  1KYQ A;  2GPI A;  5T6J A;  2IHR 1;  2EPR A;  3MSW A;  3BGH A;  2K7I A;  2E5L E;  3AV0 A;  1A1J A;  2EN8 A;  2EPM X;  5FLX C;  1T4L B;  4ZYD A;  2LVH A;  1L4S A;  2D9H A;  4WXC A;  2YTG A;  4P78 A;  2JP9 A;  2EM7 A;  1T38 A;  5LMN E;  3JU0 A;  1TN9 A;  2EM6 A;  3K6Q A;  2I13 A;  1ZU1 A;  1GTK A;  2WZO A;  2YT4 A;  2MC6 A;  2EMC A;  2LTR A;  2EOJ A;  4BC9 A;  1IBL E;  1ZR9 A;  2EM9 A;  1YYK A;  1X6E A;  4NHR A;  1MEY C;  2M7Q A;  4LF4 E;  2RS7 A;  2NUG A;  1SR9 A;  2VQE E;  3OTO E;  4WFT A;  1N34 E;  2ZM6 E;  4R2S A;  2ADR A;  5TSE A;  4K0K E;  2DSY A;  3UK3 C;  5ADZ A;  2EOH A;  2ODR C;  3IWD A;  4DKK A;  1KJK A;  2EMY A;  4DR4 E;  4O4K A;  4DUZ E;  2VF1 A;  4NXN E;  2G7H A;  2WCC 3;  1YUJ A;  2JXP A;  2MDR A;  4F54 A;  2DIX A;  2K4V A;  2EN7 A;  1TF6 A;  1BBG A;  2L6M A;  1N32 E;  2J7J A;  4HTG A;  1N36 E;  4DV7 E;  1IQO A;  3J7A G;  2EM3 A;  2EL5 A;  1YYO A;  1HNZ E;  5AC4 A;  3ADG A;  4DV6 E;  2BBG A;  4X9J A;  4B3T E;  4LF6 E;  2B9D A;  1NEI A;  2LO3 A;  3T1Y E;  1X6F A;  1IMU A;  2L33 A;  4F6M A;  2HHH E;  2EMH A;  1ZBT A;  4LF9 E;  4IS1 C;  3HQ1 A;  2NA2 A;  2L2K B;  1AAY A;  1G2D C;  2B7T A;  4KZS A;  2WBS A;  5KL3 A;  2LTS A;  4BBY A;  3VK6 A;  2L2M A;  1EH7 A;  1SFE A;  2VRD A;  2RSI A;  3BBG A;  1A1F A;  4M0V A;  2YRK A;  5AE1 A;  4M9V C;  3LLH A;  1X47 A;  1IQS A;  3T1H E;  3ADJ A;  1AH5 A;  2EPX A;  1YFH A;  1UBD C;  1UIL A;  2EQ3 A;  2YTF A;  2YTJ A;  3EPL A;  1FJG E;  2YU5 A;  2YTP A;  1J26 A;  4JV5 E;  1T4N A;  2YRM A;  4JI7 E;  5A6B D;  3F6H A;  1WRJ A;  3BF2 A;  2V88 A;  2EMF A;  2FV4 B;  4ZYG A;  4F6N A;  1WHQ A;  2Q8U A;  1UN6 B;  4RHB B;  2V83 A;  5AE2 A;  2LUP B;  4O43 A;  2LMZ A;  2UXB E;  2EPL X;  3H09 A;  1BBO A;  3BID A;  4DV3 E;  4I8O A;  4WYQ B;  1F2I G;  4L5N C;  1WXR A;  2L3J A;  3FIG A;  2EM4 A;  2ENC A;  2EOX A;  2EN6 A;  2L8T A;  2EOR A;  2DMI A;  1BB8 A;  2DGC A;  1TF3 A;  4R2C A;  5LL6 R;  5LLQ A;  1WHN A;  2EM8 A;  2YSO A;  2LE2 A;  2L92 A;  2EMK A;  1J5E E;  4MLV A;  4BS9 A;  3TQM A;  4GZN C;  1Z1B A;  4KHP E;  1QU6 A;  4HEI A;  4IJD A;  4JI0 E;  2EPK X;  1EH8 A;  5A6J A;  2DB2 A;  4R2P A;  2EPN A;  4X64 E;  3KZY A;  2M1S A;  2NAB A;  2YU8 A;  4JI5 E;  1EKZ A;  1LLM C;  2YTO A;  5IV8 B;  4LFB E;  2N3G A;  4F9C B;  1EH6 A;  2YPN A;  4B3S E;  2VQF E;  2EM0 A;  2KOU A;  2ODR D;  2FTX B;  2JVA A;  4J8Z A;  2DLK A;  4L8N A;  3EPJ A;  1A1L A;  3VYY A;  4R2R A;  3OML A;  2EMZ A;  2V8Q B;  2JOX A;  4R2E A;  2E1M A;  4FK5 C;  2UU9 E;  4BHC A;  2CPN A;  4WXD A;  2YZT A;  3MHH C;  3C6K A;  4AQY E;  2F4V E;  2KHX A;  4O5G A;  4YY3 E;  1YYW A;  4B3M E;  5A6K A;  2EMX A;  2RPC A;  3JAM C;  3J7Y p;  1ZAA C;  1G2F C;  1MGT A;  2RQL A;  3J81 C;  1YZ9 A;  3IWC A;  4BC7 A;  1X48 A;  1NCS A;  4M2Z A;  5A6A A;  2B3T B;  4DV2 E;  3VYX A;  1X3C A;  2EOQ A;  3C6M A;  1IBM E;  2EPO A;  2ENA A;  2L2N A;  2GLI A;  2EM2 A;  3HXL A;  1STU A;  4NXM E;  2NUE A;  4LTY A;  2UUA E;  2A25 A;  2EOY A;  2ELY A;  1JK2 A;  2EMB A;  4R2D A;  2EN3 A;  1I94 E;  2JY9 A;  2FGG A;  2RTX A;  5KL2 A;  3KZZ A;  4X66 E;  1DI2 A;  1YSA C;  3AUZ A;  2LV2 A;  2EPU A;  3M99 B;  2UUC E;  4JI2 E;  2LJU A;  2YTE A;  4WPY A;  2ENH A;  1P47 A;  2EOZ A;  3HPS A;  2LJH A;  1A1I A;  4WX9 A;  2EMI A;  3ADI A;  2EL4 A;  2I9I A;  1XMO E;  2JWO A;  2N8X A;  4X65 E;  2YTI A;  2EE8 A;  1YPN A;  5KL5 A;  5A2Q C;  1PJQ A;  2YSP A;  1X49 A;  4DMI A;  2H36 X;  1T39 A;  4LF7 E;  2HGH A;  4DR2 E;  4ZYH A;  2DRP A;  4O24 A;  2UXD E;  2V86 A;  3LML A;  1GZ6 A;  5LMU E;  3QG5 C;  4DV4 E;  3THN A;  2EPZ A;  4X8W A;  1XMQ E;  3MHS C;  2UXC E;  2EWL A;  1DQ3 A;  2PRT A;  4JYA E;  1DGC A;  4DR6 E;  2YWQ A;  2EOF A;  2LRS A;  5IXM B;  4F2J C;  3EPH A;  2EMW A;  2EOE A;  2JYA A;  2EPP A;  1XNR E;  4TUG A;  3C4T A;  4JI4 E;  2HJJ A;  1HNW E;  2CTD A;  2UUB E;  3HTX A;  1GQE A;  2EMA A;  4KWY A;  2WBT A;  4GEQ B;  1FKA E;  3DF6 A;  2EQ0 A;  2MDG A;  1T4O A;  2M4I A;  2JOB A;  4DV1 E;  2EP3 A;  3ADL A;  2YTD A;  1A1H A;  4DV5 E;  2V87 A;  2EOS A;  1WJP A;  2EM5 A;  1YUI A;  5A69 A;  1B69 A;  1JK1 A;  1QNT A;  2RS6 A;  2B7V A;  4BCA A;  2EPC A;  4YHH E;  4TUI A;  2F8B A;  2EL6 A;  4BMJ A;  2EJ4 A;  4B3R E;  2R76 A;  1RQ0 A;  1HNX E;  2LCE A;  5KL6 A;  2EOI A;  4WSG A;  2EZ6 A;  2WBU A;  2EN4 A;  3VHT B;  3J80 C;  5DNY A;  2MKD A;  2LBS B;  2L3C A;  4N4R B;  1RMD A;  3IWB A;  1RC7 A;  4OOG C;  5KL4 A;  2YTQ A;  2EMG A;  4RH8 A;  2CT1 A;  2MC5 A;  1A1G A;  2R1F A;  1IBK E;  4F9A B;  4JI8 E;  5AC5 A;  3F6G A;  4R8O A;  5AE3 A;  4Q35 B;  4LF8 E;  2EPA A;  5A6B A;  1O0W A;  3RMP A;  2KON A;  3ECR A; 
#chains in the Genus database with same CATH homology
 4HEI A;  2RQL A;  1N3G A;  3TQM A;  1L4S A;  2YWQ A;  1IMU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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