1IWLA

Crystal structure of the lipoprotein localization factor, lola
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
182
structure length
177
Chain Sequence
DAASDLKSRLDKVSSFHASFTQKVTDVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Outer-membrane lipoproteins carrier protein
publication title Crystal structures of bacterial lipoprotein localization factors, LolA and LolB
pubmed doi rcsb
source organism Escherichia coli
total genus 52
structure length 177
sequence length 182
ec nomenclature
pdb deposition date 2002-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03548 LolA Outer membrane lipoprotein carrier protein LolA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.50.20.10 Mainly Beta Clam outer membrane lipoprotein receptor (LolB), chain A Lipoprotein localisation LolA/LolB/LppX 1iwlA00
3M4WA 2W7QA 3BK5A 3WJUA 1IWNA 2YZYA 1IWLA 2ZPDA 2ZPCA 2V42A 3BUUA 2V43A 3WJVA 1IWMA 4Z48A 3KSNA 4MXTA 4KI3A 1UA8A 2P4BA 3WJTA
chains in the Genus database with same CATH superfamily
3M4WA 2W7QA 4QA8A 3BK5A 3WJUA 2ZF3A 4EGDA 4EG9A 1IWNA 2YZYA 4ZRAA 1IWLA 2ZPDA 2ZPCA 2V42A 3BUUA 3MH9A 2BYOA 2V43A 3WJVA 1IWMA 4Z48A 3KSNA 3MHAA 4MXTA 3MH8A 4KI3A 3BMZA 1UA8A 2ZF4A 2P4BA 3WJTA
chains in the Genus database with same CATH topology
3M4WA 2W7QA 3BK5A 3WJUA 1IWNA 2YZYA 1IWLA 2ZPDA 2ZPCA 2V42A 3BUUA 2V43A 3WJVA 1IWMA 4Z48A 3KSNA 4MXTA 4KI3A 1UA8A 2P4BA 3WJTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M4W A;  2W7Q A;  3BK5 A;  3WJU A;  1IWN A;  2YZY A;  1IWL A;  2ZPD A;  2ZPC A;  2V42 A;  3BUU A;  2V43 A;  3WJV A;  1IWM A;  4Z48 A;  3KSN A;  4MXT A;  4KI3 A;  1UA8 A;  2P4B A;  3WJT A; 
#chains in the Genus database with same CATH topology
 3M4W A;  2W7Q A;  4QA8 A;  3BK5 A;  3WJU A;  2ZF3 A;  4EGD A;  4EG9 A;  1IWN A;  2YZY A;  4ZRA A;  1IWL A;  2ZPD A;  2ZPC A;  2V42 A;  3BUU A;  3MH9 A;  2BYO A;  2V43 A;  3WJV A;  1IWM A;  4Z48 A;  3KSN A;  3MHA A;  4MXT A;  3MH8 A;  4KI3 A;  3BMZ A;  1UA8 A;  2ZF4 A;  2P4B A;  3WJT A; 
#chains in the Genus database with same CATH homology
 3M4W A;  2W7Q A;  3BK5 A;  3WJU A;  1IWN A;  2YZY A;  1IWL A;  2ZPD A;  2ZPC A;  2V42 A;  3BUU A;  2V43 A;  3WJV A;  1IWM A;  4Z48 A;  3KSN A;  4MXT A;  4KI3 A;  1UA8 A;  2P4B A;  3WJT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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