1J1HA

Solution structure of a tmrna-binding protein, smpb, from thermus thermophilus
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
123
structure length
123
Chain Sequence
MAPVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords Small Protein B
publication title Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
pubmed doi rcsb
source organism Thermus thermophilus
total genus 12
structure length 123
sequence length 123
ec nomenclature
pdb deposition date 2002-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01668 SmpB SmpB protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.280.10 Mainly Beta Beta Barrel Small Protein B; Chain: A; Small Protein B; Chain: A; 1j1hA00
2CZJA 1K8HA 1WJXA 1J1HA 1P6VA
chains in the Genus database with same CATH superfamily
2CZJA 1K8HA 1WJXA 1J1HA 1P6VA
chains in the Genus database with same CATH topology
2CZJA 1K8HA 1WJXA 1J1HA 1P6VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CZJ A;  1K8H A;  1WJX A;  1J1H A;  1P6V A; 
#chains in the Genus database with same CATH topology
 2CZJ A;  1K8H A;  1WJX A;  1J1H A;  1P6V A; 
#chains in the Genus database with same CATH homology
 2CZJ A;  1K8H A;  1WJX A;  1J1H A;  1P6V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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