1JE9A

Nmr solution structure of nt2
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
61
structure length
61
Chain Sequence
LECHNQQSSQAPTTKTCSGETNCYKKWWSDHRGTIIERGCGCPKVKPGVNLNCCRTDRCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords SHORT NEUROTOXIN II
publication title Structure-function relationship of three neurotoxins from the venom of Naja kaouthia: a comparison between the NMR-derived structure of NT2 with its homologues, NT1 and NT3
pubmed doi rcsb
total genus 7
structure length 61
sequence length 61
ec nomenclature
pdb deposition date 2001-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1je9A00
1QKDA 2GOOB 1JBDA 1REWC 2PJYC 1KXIA 1FASA 4RUDA 1JE9A 3QB4B 4XJJA 1KC4A 2MJ4A 5DU1A 3BT1U 1LSIA 2CCXA 1COEA 1HAAA 1KTZB 1FF4A 4FAOE 2MHYA 2L03A 4ZQYA 1FFJA 2LA1A 1ES7B 2H62D 2LCRA 1IKCA 2UWRA 2X8BB 3U74U 1H0JA 1KBTA 1F8UB 2H5FA 6EBXA 1KS6A 1NYUA 2JQPA 2MFAA 1W6BA 2CTXA 2H7ZA 1IDIA 3NH7A 1HOYA 2MUOA 3LAQU 1NXBA 1NORA 2HLRA 2L5SA 2BTXA 1CCQA 1BTEA 3EVSC 5IMYC 2N99A 4BDTB 4IYEA 1CDQA 2H8UA 2QC1A 1M9ZA 3PLCA 1PLOA 4QTIU 1FRAA 1B41B 2BHIA 1FSSB 1CHVS 2OFSA 1CDRA 1NYSA 4P7UA 4FAOC 1IDLA 1F94A 1NEAA 1RL5A 2K3GA 1YWHA 4AEAA 1BXPA 1ABTA 2QJ9C 2ERAA 2NBTA 1KBAA 1UG4A 2CDXA 1RGJA 1TXAA 1TGXA 1DRSA 2MJYA 1LXGA 5DO6A 2I9BE 3U73U 1QKEA 1VB0A 1MR6A 1CREA 1ERAA 4HQPF 1KFHA 1CXOA 1ONJA 1I02A 3HH7A 5EBXA 2J8BA 3FEVA 5DZ5A 2MUPA 4BIKB 4OM5A 2VLWA 1CVOA 1IK8A 3ERAA 4DO8A 1CDTA 1ERGA 1CRFA 1CODA 1CXNA 2FD6U 3KFDE 1HAJA 1NTXA 2ABXA 4EY8B 1QM7A 2QJAC 1TXBA 1XT3A 2UX2A 3NEQA 2CRTA 1KBSA 2GOOC 5IMTD 2JVEA 1LXHA 1S4YA 3EBXA 1IQ9A 1HC9B 1V6PA 1IDGA 1LJZA 1MAHF 2H64B 1HC9A 3NDSA 2CRSA 1CDSA 1CB9A 2MJ0A 1LX5B 4UY2C 1KL8A 3BT2U 1KU6B 1G6MA 1JGKA 2HLQA 3KFDI 2H7ZB 1TFSA 2H64C 2PJYB 2QJBC 2H62C 1CTXA 4LFTA 1ZADA 3VTSA 1IDHA 4OM4A 1FSCA 1NTNA 1IJCA 1L4WA
chains in the Genus database with same CATH superfamily
1QKDA 2GOOB 1JBDA 1REWC 2PJYC 1KXIA 1FASA 4RUDA 1JE9A 3QB4B 4XJJA 1KC4A 2MJ4A 5DU1A 3BT1U 1LSIA 2CCXA 1COEA 1HAAA 1KTZB 1FF4A 4FAOE 2MHYA 2L03A 4ZQYA 1FFJA 2LA1A 1ES7B 2H62D 2LCRA 1IKCA 2UWRA 2X8BB 3U74U 1H0JA 1KBTA 1F8UB 2H5FA 6EBXA 1KS6A 1NYUA 2JQPA 2MFAA 1W6BA 2CTXA 2H7ZA 1IDIA 3NH7A 1HOYA 2MUOA 3LAQU 1NXBA 1NORA 2HLRA 2L5SA 2BTXA 1CCQA 1BTEA 3EVSC 5IMYC 2N99A 4BDTB 4IYEA 1CDQA 2H8UA 2QC1A 1M9ZA 3PLCA 1PLOA 4QTIU 1FRAA 1B41B 2BHIA 1FSSB 1CHVS 2OFSA 1CDRA 1NYSA 4P7UA 4FAOC 1IDLA 1F94A 1NEAA 1RL5A 2K3GA 1YWHA 4AEAA 1BXPA 1ABTA 2QJ9C 4KSNA 2ERAA 2NBTA 1KBAA 1UG4A 2CDXA 1RGJA 1TXAA 1TGXA 1DRSA 2MJYA 1LXGA 5DO6A 2I9BE 3U73U 1QKEA 1VB0A 1MR6A 1CREA 1ERAA 4HQPF 1KFHA 1CXOA 1ONJA 1I02A 3HH7A 5EBXA 2J8BA 3FEVA 5DZ5A 2MUPA 4BIKB 4OM5A 2VLWA 1CVOA 1IK8A 3ERAA 4DO8A 1CDTA 1ERGA 1CRFA 1CODA 1CXNA 2FD6U 3KFDE 1HAJA 1NTXA 2ABXA 4EY8B 1QM7A 2QJAC 1TXBA 1XT3A 2UX2A 3NEQA 2CRTA 1KBSA 2GOOC 5IMTD 2JVEA 1LXHA 1S4YA 3EBXA 1IQ9A 1HC9B 1V6PA 1IDGA 1LJZA 1MAHF 2H64B 1HC9A 3NDSA 2CRSA 1CDSA 1CB9A 2MJ0A 1LX5B 4UY2C 1KL8A 3BT2U 1KU6B 1G6MA 1JGKA 2HLQA 3KFDI 2H7ZB 1TFSA 2H64C 2PJYB 2QJBC 2H62C 1CTXA 4LFTA 1ZADA 3VTSA 1IDHA 4OM4A 1FSCA 1NTNA 1IJCA 1L4WA
chains in the Genus database with same CATH topology
1QKDA 2GOOB 1JBDA 1REWC 2PJYC 1KXIA 1FASA 4RUDA 1JE9A 3QB4B 4XJJA 1KC4A 2MJ4A 5DU1A 3BT1U 1LSIA 2CCXA 1COEA 1HAAA 1KTZB 1FF4A 4FAOE 2MHYA 2L03A 4ZQYA 1FFJA 2LA1A 1ES7B 2H62D 2LCRA 1IKCA 2UWRA 2X8BB 3U74U 1H0JA 1KBTA 1F8UB 2H5FA 6EBXA 1KS6A 1NYUA 2JQPA 2MFAA 1W6BA 2CTXA 2H7ZA 1IDIA 3NH7A 1HOYA 2MUOA 3LAQU 1NXBA 1NORA 2HLRA 2L5SA 2BTXA 1CCQA 1BTEA 3EVSC 5IMYC 2N99A 4BDTB 4IYEA 1CDQA 2H8UA 2QC1A 1M9ZA 3PLCA 1PLOA 4QTIU 1FRAA 1B41B 2BHIA 1FSSB 1CHVS 2OFSA 1CDRA 1NYSA 4P7UA 4FAOC 1IDLA 1F94A 1NEAA 1RL5A 2K3GA 1YWHA 4AEAA 1BXPA 1ABTA 2QJ9C 4KSNA 2ERAA 2NBTA 1KBAA 1UG4A 2CDXA 1RGJA 1TXAA 1TGXA 1DRSA 2MJYA 1LXGA 5DO6A 2I9BE 3U73U 1QKEA 1VB0A 1MR6A 1CREA 1ERAA 4HQPF 1KFHA 1CXOA 1ONJA 1I02A 3HH7A 5EBXA 2J8BA 3FEVA 5DZ5A 2MUPA 4BIKB 4OM5A 2VLWA 1CVOA 1IK8A 3ERAA 4DO8A 1CDTA 1ERGA 1CRFA 1CODA 1CXNA 2FD6U 3KFDE 1HAJA 1NTXA 2ABXA 4EY8B 1QM7A 2QJAC 1TXBA 1XT3A 2UX2A 3NEQA 2CRTA 1KBSA 2GOOC 5IMTD 2JVEA 1LXHA 1S4YA 3EBXA 1IQ9A 1HC9B 1V6PA 1IDGA 1LJZA 1MAHF 2H64B 1HC9A 3NDSA 2CRSA 1CDSA 1CB9A 2MJ0A 1LX5B 4UY2C 1KL8A 3BT2U 1KU6B 1G6MA 1JGKA 2HLQA 3KFDI 2H7ZB 1TFSA 2H64C 2PJYB 2QJBC 2H62C 1CTXA 4LFTA 1ZADA 3VTSA 1IDHA 4OM4A 1FSCA 1NTNA 1IJCA 1L4WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QKD A;  2GOO B;  1JBD A;  1REW C;  2PJY C;  1KXI A;  1FAS A;  4RUD A;  1JE9 A;  3QB4 B;  4XJJ A;  1KC4 A;  2MJ4 A;  5DU1 A;  3BT1 U;  1LSI A;  2CCX A;  1COE A;  1HAA A;  1KTZ B;  1FF4 A;  4FAO E;  2MHY A;  2L03 A;  4ZQY A;  1FFJ A;  2LA1 A;  1ES7 B;  2H62 D;  2LCR A;  1IKC A;  2UWR A;  2X8B B;  3U74 U;  1H0J A;  1KBT A;  1F8U B;  2H5F A;  6EBX A;  1KS6 A;  1NYU A;  2JQP A;  2MFA A;  1W6B A;  2CTX A;  2H7Z A;  1IDI A;  3NH7 A;  1HOY A;  2MUO A;  3LAQ U;  1NXB A;  1NOR A;  2HLR A;  2L5S A;  2BTX A;  1CCQ A;  1BTE A;  3EVS C;  5IMY C;  2N99 A;  4BDT B;  4IYE A;  1CDQ A;  2H8U A;  2QC1 A;  1M9Z A;  3PLC A;  1PLO A;  4QTI U;  1FRA A;  1B41 B;  2BHI A;  1FSS B;  1CHV S;  2OFS A;  1CDR A;  1NYS A;  4P7U A;  4FAO C;  1IDL A;  1F94 A;  1NEA A;  1RL5 A;  2K3G A;  1YWH A;  4AEA A;  1BXP A;  1ABT A;  2QJ9 C;  2ERA A;  2NBT A;  1KBA A;  1UG4 A;  2CDX A;  1RGJ A;  1TXA A;  1TGX A;  1DRS A;  2MJY A;  1LXG A;  5DO6 A;  2I9B E;  3U73 U;  1QKE A;  1VB0 A;  1MR6 A;  1CRE A;  1ERA A;  4HQP F;  1KFH A;  1CXO A;  1ONJ A;  1I02 A;  3HH7 A;  5EBX A;  2J8B A;  3FEV A;  5DZ5 A;  2MUP A;  4BIK B;  4OM5 A;  2VLW A;  1CVO A;  1IK8 A;  3ERA A;  4DO8 A;  1CDT A;  1ERG A;  1CRF A;  1COD A;  1CXN A;  2FD6 U;  3KFD E;  1HAJ A;  1NTX A;  2ABX A;  4EY8 B;  1QM7 A;  2QJA C;  1TXB A;  1XT3 A;  2UX2 A;  3NEQ A;  2CRT A;  1KBS A;  2GOO C;  5IMT D;  2JVE A;  1LXH A;  1S4Y A;  3EBX A;  1IQ9 A;  1HC9 B;  1V6P A;  1IDG A;  1LJZ A;  1MAH F;  2H64 B;  1HC9 A;  3NDS A;  2CRS A;  1CDS A;  1CB9 A;  2MJ0 A;  1LX5 B;  4UY2 C;  1KL8 A;  3BT2 U;  1KU6 B;  1G6M A;  1JGK A;  2HLQ A;  3KFD I;  2H7Z B;  1TFS A;  2H64 C;  2PJY B;  2QJB C;  2H62 C;  1CTX A;  4LFT A;  1ZAD A;  3VTS A;  1IDH A;  4OM4 A;  1FSC A;  1NTN A;  1IJC A;  1L4W A; 
#chains in the Genus database with same CATH topology
 1QKD A;  2GOO B;  1JBD A;  1REW C;  2PJY C;  1KXI A;  1FAS A;  4RUD A;  1JE9 A;  3QB4 B;  4XJJ A;  1KC4 A;  2MJ4 A;  5DU1 A;  3BT1 U;  1LSI A;  2CCX A;  1COE A;  1HAA A;  1KTZ B;  1FF4 A;  4FAO E;  2MHY A;  2L03 A;  4ZQY A;  1FFJ A;  2LA1 A;  1ES7 B;  2H62 D;  2LCR A;  1IKC A;  2UWR A;  2X8B B;  3U74 U;  1H0J A;  1KBT A;  1F8U B;  2H5F A;  6EBX A;  1KS6 A;  1NYU A;  2JQP A;  2MFA A;  1W6B A;  2CTX A;  2H7Z A;  1IDI A;  3NH7 A;  1HOY A;  2MUO A;  3LAQ U;  1NXB A;  1NOR A;  2HLR A;  2L5S A;  2BTX A;  1CCQ A;  1BTE A;  3EVS C;  5IMY C;  2N99 A;  4BDT B;  4IYE A;  1CDQ A;  2H8U A;  2QC1 A;  1M9Z A;  3PLC A;  1PLO A;  4QTI U;  1FRA A;  1B41 B;  2BHI A;  1FSS B;  1CHV S;  2OFS A;  1CDR A;  1NYS A;  4P7U A;  4FAO C;  1IDL A;  1F94 A;  1NEA A;  1RL5 A;  2K3G A;  1YWH A;  4AEA A;  1BXP A;  1ABT A;  2QJ9 C;  4KSN A;  2ERA A;  2NBT A;  1KBA A;  1UG4 A;  2CDX A;  1RGJ A;  1TXA A;  1TGX A;  1DRS A;  2MJY A;  1LXG A;  5DO6 A;  2I9B E;  3U73 U;  1QKE A;  1VB0 A;  1MR6 A;  1CRE A;  1ERA A;  4HQP F;  1KFH A;  1CXO A;  1ONJ A;  1I02 A;  3HH7 A;  5EBX A;  2J8B A;  3FEV A;  5DZ5 A;  2MUP A;  4BIK B;  4OM5 A;  2VLW A;  1CVO A;  1IK8 A;  3ERA A;  4DO8 A;  1CDT A;  1ERG A;  1CRF A;  1COD A;  1CXN A;  2FD6 U;  3KFD E;  1HAJ A;  1NTX A;  2ABX A;  4EY8 B;  1QM7 A;  2QJA C;  1TXB A;  1XT3 A;  2UX2 A;  3NEQ A;  2CRT A;  1KBS A;  2GOO C;  5IMT D;  2JVE A;  1LXH A;  1S4Y A;  3EBX A;  1IQ9 A;  1HC9 B;  1V6P A;  1IDG A;  1LJZ A;  1MAH F;  2H64 B;  1HC9 A;  3NDS A;  2CRS A;  1CDS A;  1CB9 A;  2MJ0 A;  1LX5 B;  4UY2 C;  1KL8 A;  3BT2 U;  1KU6 B;  1G6M A;  1JGK A;  2HLQ A;  3KFD I;  2H7Z B;  1TFS A;  2H64 C;  2PJY B;  2QJB C;  2H62 C;  1CTX A;  4LFT A;  1ZAD A;  3VTS A;  1IDH A;  4OM4 A;  1FSC A;  1NTN A;  1IJC A;  1L4W A; 
#chains in the Genus database with same CATH homology
 1QKD A;  2GOO B;  1JBD A;  1REW C;  2PJY C;  1KXI A;  1FAS A;  4RUD A;  1JE9 A;  3QB4 B;  4XJJ A;  1KC4 A;  2MJ4 A;  5DU1 A;  3BT1 U;  1LSI A;  2CCX A;  1COE A;  1HAA A;  1KTZ B;  1FF4 A;  4FAO E;  2MHY A;  2L03 A;  4ZQY A;  1FFJ A;  2LA1 A;  1ES7 B;  2H62 D;  2LCR A;  1IKC A;  2UWR A;  2X8B B;  3U74 U;  1H0J A;  1KBT A;  1F8U B;  2H5F A;  6EBX A;  1KS6 A;  1NYU A;  2JQP A;  2MFA A;  1W6B A;  2CTX A;  2H7Z A;  1IDI A;  3NH7 A;  1HOY A;  2MUO A;  3LAQ U;  1NXB A;  1NOR A;  2HLR A;  2L5S A;  2BTX A;  1CCQ A;  1BTE A;  3EVS C;  5IMY C;  2N99 A;  4BDT B;  4IYE A;  1CDQ A;  2H8U A;  2QC1 A;  1M9Z A;  3PLC A;  1PLO A;  4QTI U;  1FRA A;  1B41 B;  2BHI A;  1FSS B;  1CHV S;  2OFS A;  1CDR A;  1NYS A;  4P7U A;  4FAO C;  1IDL A;  1F94 A;  1NEA A;  1RL5 A;  2K3G A;  1YWH A;  4AEA A;  1BXP A;  1ABT A;  2QJ9 C;  4KSN A;  2ERA A;  2NBT A;  1KBA A;  1UG4 A;  2CDX A;  1RGJ A;  1TXA A;  1TGX A;  1DRS A;  2MJY A;  1LXG A;  5DO6 A;  2I9B E;  3U73 U;  1QKE A;  1VB0 A;  1MR6 A;  1CRE A;  1ERA A;  4HQP F;  1KFH A;  1CXO A;  1ONJ A;  1I02 A;  3HH7 A;  5EBX A;  2J8B A;  3FEV A;  5DZ5 A;  2MUP A;  4BIK B;  4OM5 A;  2VLW A;  1CVO A;  1IK8 A;  3ERA A;  4DO8 A;  1CDT A;  1ERG A;  1CRF A;  1COD A;  1CXN A;  2FD6 U;  3KFD E;  1HAJ A;  1NTX A;  2ABX A;  4EY8 B;  1QM7 A;  2QJA C;  1TXB A;  1XT3 A;  2UX2 A;  3NEQ A;  2CRT A;  1KBS A;  2GOO C;  5IMT D;  2JVE A;  1LXH A;  1S4Y A;  3EBX A;  1IQ9 A;  1HC9 B;  1V6P A;  1IDG A;  1LJZ A;  1MAH F;  2H64 B;  1HC9 A;  3NDS A;  2CRS A;  1CDS A;  1CB9 A;  2MJ0 A;  1LX5 B;  4UY2 C;  1KL8 A;  3BT2 U;  1KU6 B;  1G6M A;  1JGK A;  2HLQ A;  3KFD I;  2H7Z B;  1TFS A;  2H64 C;  2PJY B;  2QJB C;  2H62 C;  1CTX A;  4LFT A;  1ZAD A;  3VTS A;  1IDH A;  4OM4 A;  1FSC A;  1NTN A;  1IJC A;  1L4W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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