1JH3A

Solution structure of tyrosyl-trna synthetase c-terminal domain.
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
99
structure length
99
Chain Sequence
ALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLEGRFTVIRRGKKKYYLIRYA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Ligase
molecule keywords TYROSYL-TRNA SYNTHETASE
publication title Structure and Dynamics of the Anticodon Arm Binding Domain of Bacillus stearothermophilus Tyrosyl-tRNA Synthetase
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 22
structure length 99
sequence length 99
ec nomenclature ec 6.1.1.1: Tyrosine--tRNA ligase.
pdb deposition date 2001-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1jh3A00
2VQED 4JYAD 4DR1D 2VQFD 3KBGA 4NXMD 4DV5D 2HHHD 2UUBD 4JI3D 4LF6D 4LFAD 1J5ED 4LF4D 4GKKD 4DV1D 4X62D 3T1HD 4LFCD 5LMUD 4JI2D 2UXBD 1N32D 4DR5D 1P9KA 2K6PA 4LFBD 4KHPD 4JV5D 4JI0D 4JI7D 1H3EA 1DM9A 4B3RD 1IBLD 2UXDD 1HR0D 4LF7D 3OTOD 4DV3D 1XNQD 2KTLA 4DR7D 4NXND 4JI5D 1FJGD 4B3SD 3HP7A 4JI6D 4DV0D 1N34D 3DH3A 1FKAD 4B3TD 1XMQD 4DR2D 2UU9D 1JH3A 1XNRD 4DR4D 4LF8D 2E5LD 1N33D 1C06A 4X66D 4B3MD 4DV4D 4LGTA 1HNWD 1VIOA 1C05A 2UUCD 5LMND 4AQYD 1N36D 4JI4D 1HNZD 4DR6D 1KSKA 1XMOD 4DUZD 2UUAD 2UXCD 4OUDA 4K0KD 1KSLA 1HNXD 1IBMD 4X65D 1I94D 4LF5D 4JI1D 4X64D 2JANA 4YY3D 4GKJD 5IWAD 2ZM6D 1IBKD 4DR3D 2ISTA 4DV6D 1KSVA 4DUYD 4LF9D 3T1YD 5BR8D 4DV7D 4OX9D 2F4VD 4DV2D 4YHHD 4JI8D 1H3FA
chains in the Genus database with same CATH superfamily
2VQED 4JYAD 4DR1D 2VQFD 3KBGA 4NXMD 4DV5D 2HHHD 2UUBD 4JI3D 4LF6D 4LFAD 2ZTBA 1J5ED 4LF4D 4GKKD 4DV1D 3KYDB 4X62D 3T1HD 4LFCD 5LMUD 4JI2D 2UXBD 1Y8RB 1N32D 4DR5D 5IT9E 1P9KA 2K6PA 2I1SA 4NNJA 4LFBD 4KHPD 4JV5D 4W5VB 4JI0D 4JI7D 1H3EA 1DM9A 5FQ2B 4B3RD 1IBLD 2UXDD 1HR0D 4LF7D 3OTOD 4DV3D 1XNQD 2KTLA 4DR7D 4NXND 4JI5D 1FJGD 4B3SD 3HP7A 4JI6D 4DV0D 1N34D 4II3A 3DH3A 1FKAD 4B3TD 1XMQD 4DR2D 3JAME 2UU9D 1JH3A 1XNRD 4DR4D 4LF8D 2E5LD 1N33D 1C06A 4X66D 3KYCB 4B3MD 5A2QE 4DV4D 3J7AF 4LGTA 1HNWD 1VIOA 1C05A 5LL6S 2UUCD 5LMND 3FN1A 4AQYD 1N36D 4JI4D 1HNZD 2NVUB 4DR6D 1KSKA 1XMOD 4DUZD 2UUAD 2UXCD 4OUDA 4K0KD 1KSLA 1HNXD 3J80E 1IBMD 4X65D 1I94D 4LF5D 4JI1D 4X64D 5FLXE 1Y8QB 2JANA 3ONGA 4YY3D 4GKJD 5IWAD 2ZM6D 1IBKD 4DR3D 2ISTA 4DV6D 3CMMA 1KSVA 2LQ7A 4DUYD 4LF9D 3T1YD 3ONHA 5KNLA 5BR8D 4DV7D 3J81E 4OX9D 2F4VD 4DV2D 1Y8XB 4YHHD 4II2A 4JI8D 1H3FA
chains in the Genus database with same CATH topology
2VQED 4JYAD 4DR1D 2VQFD 3KBGA 4NXMD 4DV5D 2HHHD 2UUBD 4JI3D 4LF6D 4LFAD 1J5ED 4LF4D 4GKKD 4DV1D 4X62D 3T1HD 4LFCD 5LMUD 4JI2D 2UXBD 1N32D 4DR5D 1P9KA 2K6PA 4LFBD 4KHPD 4JV5D 4JI0D 4JI7D 1H3EA 1DM9A 4B3RD 1IBLD 2UXDD 1HR0D 4LF7D 3OTOD 4DV3D 1XNQD 2KTLA 4DR7D 4NXND 4JI5D 1FJGD 4B3SD 3HP7A 4JI6D 4DV0D 1N34D 3DH3A 1FKAD 4B3TD 1XMQD 4DR2D 2UU9D 1JH3A 1XNRD 4DR4D 4LF8D 2E5LD 1N33D 1C06A 4X66D 4B3MD 4DV4D 4LGTA 1HNWD 1VIOA 1C05A 2UUCD 5LMND 4AQYD 1N36D 4JI4D 1HNZD 4DR6D 1KSKA 1XMOD 4DUZD 2UUAD 2UXCD 4OUDA 4K0KD 1KSLA 1HNXD 1IBMD 4X65D 1I94D 4LF5D 4JI1D 4X64D 2JANA 4YY3D 4GKJD 5IWAD 2ZM6D 1IBKD 4DR3D 2ISTA 4DV6D 1KSVA 4DUYD 4LF9D 3T1YD 5BR8D 4DV7D 4OX9D 2F4VD 4DV2D 4YHHD 4JI8D 1H3FA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2VQE D;  4JYA D;  4DR1 D;  2VQF D;  3KBG A;  4NXM D;  4DV5 D;  2HHH D;  2UUB D;  4JI3 D;  4LF6 D;  4LFA D;  1J5E D;  4LF4 D;  4GKK D;  4DV1 D;  4X62 D;  3T1H D;  4LFC D;  5LMU D;  4JI2 D;  2UXB D;  1N32 D;  4DR5 D;  1P9K A;  2K6P A;  4LFB D;  4KHP D;  4JV5 D;  4JI0 D;  4JI7 D;  1H3E A;  1DM9 A;  4B3R D;  1IBL D;  2UXD D;  1HR0 D;  4LF7 D;  3OTO D;  4DV3 D;  1XNQ D;  2KTL A;  4DR7 D;  4NXN D;  4JI5 D;  1FJG D;  4B3S D;  3HP7 A;  4JI6 D;  4DV0 D;  1N34 D;  3DH3 A;  1FKA D;  4B3T D;  1XMQ D;  4DR2 D;  2UU9 D;  1JH3 A;  1XNR D;  4DR4 D;  4LF8 D;  2E5L D;  1N33 D;  1C06 A;  4X66 D;  4B3M D;  4DV4 D;  4LGT A;  1HNW D;  1VIO A;  1C05 A;  2UUC D;  5LMN D;  4AQY D;  1N36 D;  4JI4 D;  1HNZ D;  4DR6 D;  1KSK A;  1XMO D;  4DUZ D;  2UUA D;  2UXC D;  4OUD A;  4K0K D;  1KSL A;  1HNX D;  1IBM D;  4X65 D;  1I94 D;  4LF5 D;  4JI1 D;  4X64 D;  2JAN A;  4YY3 D;  4GKJ D;  5IWA D;  2ZM6 D;  1IBK D;  4DR3 D;  2IST A;  4DV6 D;  1KSV A;  4DUY D;  4LF9 D;  3T1Y D;  5BR8 D;  4DV7 D;  4OX9 D;  2F4V D;  4DV2 D;  4YHH D;  4JI8 D;  1H3F A; 
#chains in the Genus database with same CATH topology
 2VQE D;  4JYA D;  4DR1 D;  2VQF D;  3KBG A;  4NXM D;  4DV5 D;  2HHH D;  2UUB D;  4JI3 D;  4LF6 D;  4LFA D;  2ZTB A;  1J5E D;  4LF4 D;  4GKK D;  4DV1 D;  3KYD B;  4X62 D;  3T1H D;  4LFC D;  5LMU D;  4JI2 D;  2UXB D;  1Y8R B;  1N32 D;  4DR5 D;  5IT9 E;  1P9K A;  2K6P A;  2I1S A;  4NNJ A;  4LFB D;  4KHP D;  4JV5 D;  4W5V B;  4JI0 D;  4JI7 D;  1H3E A;  1DM9 A;  5FQ2 B;  4B3R D;  1IBL D;  2UXD D;  1HR0 D;  4LF7 D;  3OTO D;  4DV3 D;  1XNQ D;  2KTL A;  4DR7 D;  4NXN D;  4JI5 D;  1FJG D;  4B3S D;  3HP7 A;  4JI6 D;  4DV0 D;  1N34 D;  4II3 A;  3DH3 A;  1FKA D;  4B3T D;  1XMQ D;  4DR2 D;  3JAM E;  2UU9 D;  1JH3 A;  1XNR D;  4DR4 D;  4LF8 D;  2E5L D;  1N33 D;  1C06 A;  4X66 D;  3KYC B;  4B3M D;  5A2Q E;  4DV4 D;  3J7A F;  4LGT A;  1HNW D;  1VIO A;  1C05 A;  5LL6 S;  2UUC D;  5LMN D;  3FN1 A;  4AQY D;  1N36 D;  4JI4 D;  1HNZ D;  2NVU B;  4DR6 D;  1KSK A;  1XMO D;  4DUZ D;  2UUA D;  2UXC D;  4OUD A;  4K0K D;  1KSL A;  1HNX D;  3J80 E;  1IBM D;  4X65 D;  1I94 D;  4LF5 D;  4JI1 D;  4X64 D;  5FLX E;  1Y8Q B;  2JAN A;  3ONG A;  4YY3 D;  4GKJ D;  5IWA D;  2ZM6 D;  1IBK D;  4DR3 D;  2IST A;  4DV6 D;  3CMM A;  1KSV A;  2LQ7 A;  4DUY D;  4LF9 D;  3T1Y D;  3ONH A;  5KNL A;  5BR8 D;  4DV7 D;  3J81 E;  4OX9 D;  2F4V D;  4DV2 D;  1Y8X B;  4YHH D;  4II2 A;  4JI8 D;  1H3F A; 
#chains in the Genus database with same CATH homology
 2VQE D;  4JYA D;  4DR1 D;  2VQF D;  3KBG A;  4NXM D;  4DV5 D;  2HHH D;  2UUB D;  4JI3 D;  4LF6 D;  4LFA D;  1J5E D;  4LF4 D;  4GKK D;  4DV1 D;  4X62 D;  3T1H D;  4LFC D;  5LMU D;  4JI2 D;  2UXB D;  1N32 D;  4DR5 D;  1P9K A;  2K6P A;  4LFB D;  4KHP D;  4JV5 D;  4JI0 D;  4JI7 D;  1H3E A;  1DM9 A;  4B3R D;  1IBL D;  2UXD D;  1HR0 D;  4LF7 D;  3OTO D;  4DV3 D;  1XNQ D;  2KTL A;  4DR7 D;  4NXN D;  4JI5 D;  1FJG D;  4B3S D;  3HP7 A;  4JI6 D;  4DV0 D;  1N34 D;  3DH3 A;  1FKA D;  4B3T D;  1XMQ D;  4DR2 D;  2UU9 D;  1JH3 A;  1XNR D;  4DR4 D;  4LF8 D;  2E5L D;  1N33 D;  1C06 A;  4X66 D;  4B3M D;  4DV4 D;  4LGT A;  1HNW D;  1VIO A;  1C05 A;  2UUC D;  5LMN D;  4AQY D;  1N36 D;  4JI4 D;  1HNZ D;  4DR6 D;  1KSK A;  1XMO D;  4DUZ D;  2UUA D;  2UXC D;  4OUD A;  4K0K D;  1KSL A;  1HNX D;  1IBM D;  4X65 D;  1I94 D;  4LF5 D;  4JI1 D;  4X64 D;  2JAN A;  4YY3 D;  4GKJ D;  5IWA D;  2ZM6 D;  1IBK D;  4DR3 D;  2IST A;  4DV6 D;  1KSV A;  4DUY D;  4LF9 D;  3T1Y D;  5BR8 D;  4DV7 D;  4OX9 D;  2F4V D;  4DV2 D;  4YHH D;  4JI8 D;  1H3F A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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