1K19A

Nmr solution structure of the chemosensory protein csp2 from moth mamestra brassicae
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
112
structure length
112
Chain Sequence
EDKYTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDRAKAAGIVIPEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transport
molecule keywords Chemosensory Protein CSP2
publication title Solution structure of a chemosensory protein from the moth Mamestra brassicae
pubmed doi rcsb
source organism Mamestra brassicae
total genus 24
structure length 112
sequence length 112
ec nomenclature
pdb deposition date 2001-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03392 OS-D Insect pheromone-binding family, A10/OS-D
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.2080.10 Mainly Alpha Orthogonal Bundle Antennal chemosensory protein a6 Insect odorant-binding protein A10/Ejaculatory bulb-specific protein 3 1k19A00
1KX9A 1KX8A 2JNTA 1N8VA 2GVSA 1K19A 1N8UA
chains in the Genus database with same CATH superfamily
1KX9A 1KX8A 2JNTA 1N8VA 2GVSA 1K19A 1N8UA
chains in the Genus database with same CATH topology
1KX9A 1KX8A 2JNTA 1N8VA 2GVSA 1K19A 1N8UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KX9 A;  1KX8 A;  2JNT A;  1N8V A;  2GVS A;  1K19 A;  1N8U A; 
#chains in the Genus database with same CATH topology
 1KX9 A;  1KX8 A;  2JNT A;  1N8V A;  2GVS A;  1K19 A;  1N8U A; 
#chains in the Genus database with same CATH homology
 1KX9 A;  1KX8 A;  2JNT A;  1N8V A;  2GVS A;  1K19 A;  1N8U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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