1K8AJ

Co-crystal structure of carbomycin a bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
167
structure length
156
Chain Sequence
KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKDGMRAPFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAGNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The structures of four macrolide antibiotics bound to the large ribosomal subunit.
pubmed doi rcsb
total genus 29
structure length 156
sequence length 167
ec nomenclature
pdb deposition date 2001-10-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1k8aJ00
1VQ4H 3I56H 1YJ9H 3CCRH 1Q82J 1VQLH 3PIOJ 1QVGH 4WF9J 1VQMH 1VQPH 3DLLJ 1Q7YJ 1KC8J 1Y69K 2PA2A 1VQNH 3CCLH 1Q81J 2ZJQJ 3CCQH 4WFBJ 3CMEH 2QEXH 1N8RJ 5HL7J 4IOAJ 2ZJPJ 1M90J 4U67J 1VQKH 3CC4H 1K8AJ 3J7ZM 5MLCO 2OTLH 3CCJH 1YIJH 5DM6J 1S72H 5GADN 1WKIA 3CPWH 3CCEH 1YHQH 3PIPJ 1KD1J 4IO9J 3CCMH 1VQ8H 2OTJH 4IOCJ 4WCEJ 1VQ7H 3CXCH 4WFAJ 3CCVH 1KQSH 1M1KJ 3CC7H 3G6EH 5GAEN 3CC2H 1VQ5H 1YJNH 4UY8M 3G4SH 1VQ9H 5JVGJ 5DM7J 1YITH 1K9MJ 3CMAH 1JJ2H 3CF5J 3CD6H 5AN9F 1YI2H 5GAHN 1YJWH 2QA4H 3I55H 1Q86J 1VQ6H 1QVFH 3CCUH 1W2BH 5GAGN 1VQOH 3CCSH 5H1SO 3G71H 2ZJRJ 1K73J 1NJIJ 3OW2H 4WFNJ 5JVHJ
chains in the Genus database with same CATH superfamily
5EP8A 1VQ4H 1N63B 1JRPB 3RPFA 3I56H 1YJ9H 4ZOHA 3CCRH 1V97A 1FIQC 1Q82J 3AN1A 1QPQA 2W54B 4C7YA 1VQLH 2E3TA 3GNNA 3H5QA 1FO4A 3PIOJ 1QVGH 4WF9J 2WP4A 1DGJA 1VQMH 1YTDA 3PAJA 1VQPH 3DLLJ 1YTKA 1N60B 5AYZA 1Q7YJ 1KC8J 3L0GA 1JROB 1O4UA 3C2EA 2JBMA 2B7QA 1Y69K 2PA2A 1VQNH 3CCLH 1Q81J 1NVJA 2I14A 2ZJQJ 2OMDA 3CCQH 1VLBA 4WFBJ 3CMEH 2QEXH 1N8RJ 5HL7J 5MPOC 1FM0E 3C2RA 4IOAJ 3AM9A 4C80A 2ZJPJ 2W55B 1M90J 4U67J 1VQKH 1QAPA 5HUOA 3CC4H 1K8AJ 1QPNA 2W3SB 3J7ZM 1VDVA 5MLCO 2OTLH 3CCJH 3NRZC 1YIJH 5DM6J 1FFUB 1S72H 3FAHA 1AZYA 1SB3A 3VMMA 5GADN 1QPRA 2J0FA 3C2VA 1WKIA 3CPWH 2DSJA 3CCEH 1YHQH 3L4PA 3PIPJ 4I9AA 5EY3A 1KD1J 4IO9J 4US8A 3CCMH 2B7PA 2Q5WE 3C2FA 1VQ8H 2OTJH 4IOCJ 1RM6A 5HUPA 1N5WB 4KWVA 1ZXIB 4WCEJ 1VQ7H 3CXCH 1WYGA 1QPOA 3NVVC 5HULA 3WO0A 2B7NA 4WFAJ 3CCVH 1KQSH 3C2OA 4XR5A 5AYXA 1M1KJ 4EADA 3CC7H 3G6EH 5GAEN 1YTEA 3NVWC 3CC2H 3TQVA 1VQ5H 3B9JC 1SIJA 3WNZA 1YJNH 4US9A 4AP8A 4UY8M 3G4SH 3WO1A 1VQ9H 5JVGJ 5DM7J 1X1OA 4EAFA 1YITH 3CMAH 4YEKA 1K9MJ 1JJ2H 3BIIE 4GA6A 3CF5J 3NVZC 3CD6H 4GA5A 5AN9F 5AYYA 1N5XA 4KWWA 3FC4A 1YI2H 5GAHN 2WK6A 1OTPA 1YJWH 1FMAE 2WK5A 3I55H 2QA4H 3EUB4 4X46A 1Q86J 2QIEA 1VQ6H 1FFVB 4GA4A 1QVFH 3CCUH 1N61B 1W2BH 2TPTA 3ETRC 2I1OA 3NVYC 4C7ZA 3NS1C 5GAGN 3SR6C 1N62B 1VQOH 2W3RB 3CCSH 5H1SO 4USAA 3AMZA 3G71H 1UOUA 2ZJRJ 1K73J 4YYYA 1BRWA 1NVIE 3OW2H 4WFNJ 1NJIJ 5JVHJ 4LHMA
chains in the Genus database with same CATH topology
1VQ4H 3I56H 1YJ9H 3CCRH 1Q82J 1VQLH 3PIOJ 1QVGH 4WF9J 1VQMH 1VQPH 3DLLJ 1Q7YJ 1KC8J 1Y69K 2PA2A 1VQNH 3CCLH 1Q81J 2ZJQJ 3CCQH 4WFBJ 3CMEH 2QEXH 1N8RJ 5HL7J 4IOAJ 2ZJPJ 1M90J 4U67J 1VQKH 3CC4H 1K8AJ 3J7ZM 5MLCO 2OTLH 3CCJH 1YIJH 5DM6J 1S72H 5GADN 1WKIA 3CPWH 3CCEH 1YHQH 3PIPJ 1KD1J 4IO9J 3CCMH 1VQ8H 2OTJH 4IOCJ 4WCEJ 1VQ7H 3CXCH 4WFAJ 3CCVH 1KQSH 1M1KJ 3CC7H 3G6EH 5GAEN 3CC2H 1VQ5H 1YJNH 4UY8M 3G4SH 1VQ9H 5JVGJ 5DM7J 1YITH 1K9MJ 3CMAH 1JJ2H 3CF5J 3CD6H 5AN9F 1YI2H 5GAHN 1YJWH 2QA4H 3I55H 1Q86J 1VQ6H 1QVFH 3CCUH 1W2BH 5GAGN 1VQOH 3CCSH 5H1SO 3G71H 2ZJRJ 1K73J 1NJIJ 3OW2H 4WFNJ 5JVHJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQ4 H;  3I56 H;  1YJ9 H;  3CCR H;  1Q82 J;  1VQL H;  3PIO J;  1QVG H;  4WF9 J;  1VQM H;  1VQP H;  3DLL J;  1Q7Y J;  1KC8 J;  1Y69 K;  2PA2 A;  1VQN H;  3CCL H;  1Q81 J;  2ZJQ J;  3CCQ H;  4WFB J;  3CME H;  2QEX H;  1N8R J;  5HL7 J;  4IOA J;  2ZJP J;  1M90 J;  4U67 J;  1VQK H;  3CC4 H;  1K8A J;  3J7Z M;  5MLC O;  2OTL H;  3CCJ H;  1YIJ H;  5DM6 J;  1S72 H;  5GAD N;  1WKI A;  3CPW H;  3CCE H;  1YHQ H;  3PIP J;  1KD1 J;  4IO9 J;  3CCM H;  1VQ8 H;  2OTJ H;  4IOC J;  4WCE J;  1VQ7 H;  3CXC H;  4WFA J;  3CCV H;  1KQS H;  1M1K J;  3CC7 H;  3G6E H;  5GAE N;  3CC2 H;  1VQ5 H;  1YJN H;  4UY8 M;  3G4S H;  1VQ9 H;  5JVG J;  5DM7 J;  1YIT H;  1K9M J;  3CMA H;  1JJ2 H;  3CF5 J;  3CD6 H;  5AN9 F;  1YI2 H;  5GAH N;  1YJW H;  2QA4 H;  3I55 H;  1Q86 J;  1VQ6 H;  1QVF H;  3CCU H;  1W2B H;  5GAG N;  1VQO H;  3CCS H;  5H1S O;  3G71 H;  2ZJR J;  1K73 J;  1NJI J;  3OW2 H;  4WFN J;  5JVH J; 
#chains in the Genus database with same CATH topology
 5EP8 A;  1VQ4 H;  1N63 B;  1JRP B;  3RPF A;  3I56 H;  1YJ9 H;  4ZOH A;  3CCR H;  1V97 A;  1FIQ C;  1Q82 J;  3AN1 A;  1QPQ A;  2W54 B;  4C7Y A;  1VQL H;  2E3T A;  3GNN A;  3H5Q A;  1FO4 A;  3PIO J;  1QVG H;  4WF9 J;  2WP4 A;  1DGJ A;  1VQM H;  1YTD A;  3PAJ A;  1VQP H;  3DLL J;  1YTK A;  1N60 B;  5AYZ A;  1Q7Y J;  1KC8 J;  3L0G A;  1JRO B;  1O4U A;  3C2E A;  2JBM A;  2B7Q A;  1Y69 K;  2PA2 A;  1VQN H;  3CCL H;  1Q81 J;  1NVJ A;  2I14 A;  2ZJQ J;  2OMD A;  3CCQ H;  1VLB A;  4WFB J;  3CME H;  2QEX H;  1N8R J;  5HL7 J;  5MPO C;  1FM0 E;  3C2R A;  4IOA J;  3AM9 A;  4C80 A;  2ZJP J;  2W55 B;  1M90 J;  4U67 J;  1VQK H;  1QAP A;  5HUO A;  3CC4 H;  1K8A J;  1QPN A;  2W3S B;  3J7Z M;  1VDV A;  5MLC O;  2OTL H;  3CCJ H;  3NRZ C;  1YIJ H;  5DM6 J;  1FFU B;  1S72 H;  3FAH A;  1AZY A;  1SB3 A;  3VMM A;  5GAD N;  1QPR A;  2J0F A;  3C2V A;  1WKI A;  3CPW H;  2DSJ A;  3CCE H;  1YHQ H;  3L4P A;  3PIP J;  4I9A A;  5EY3 A;  1KD1 J;  4IO9 J;  4US8 A;  3CCM H;  2B7P A;  2Q5W E;  3C2F A;  1VQ8 H;  2OTJ H;  4IOC J;  1RM6 A;  5HUP A;  1N5W B;  4KWV A;  1ZXI B;  4WCE J;  1VQ7 H;  3CXC H;  1WYG A;  1QPO A;  3NVV C;  5HUL A;  3WO0 A;  2B7N A;  4WFA J;  3CCV H;  1KQS H;  3C2O A;  4XR5 A;  5AYX A;  1M1K J;  4EAD A;  3CC7 H;  3G6E H;  5GAE N;  1YTE A;  3NVW C;  3CC2 H;  3TQV A;  1VQ5 H;  3B9J C;  1SIJ A;  3WNZ A;  1YJN H;  4US9 A;  4AP8 A;  4UY8 M;  3G4S H;  3WO1 A;  1VQ9 H;  5JVG J;  5DM7 J;  1X1O A;  4EAF A;  1YIT H;  3CMA H;  4YEK A;  1K9M J;  1JJ2 H;  3BII E;  4GA6 A;  3CF5 J;  3NVZ C;  3CD6 H;  4GA5 A;  5AN9 F;  5AYY A;  1N5X A;  4KWW A;  3FC4 A;  1YI2 H;  5GAH N;  2WK6 A;  1OTP A;  1YJW H;  1FMA E;  2WK5 A;  3I55 H;  2QA4 H;  3EUB 4;  4X46 A;  1Q86 J;  2QIE A;  1VQ6 H;  1FFV B;  4GA4 A;  1QVF H;  3CCU H;  1N61 B;  1W2B H;  2TPT A;  3ETR C;  2I1O A;  3NVY C;  4C7Z A;  3NS1 C;  5GAG N;  3SR6 C;  1N62 B;  1VQO H;  2W3R B;  3CCS H;  5H1S O;  4USA A;  3AMZ A;  3G71 H;  1UOU A;  2ZJR J;  1K73 J;  4YYY A;  1BRW A;  1NVI E;  3OW2 H;  4WFN J;  1NJI J;  5JVH J;  4LHM A; 
#chains in the Genus database with same CATH homology
 1VQ4 H;  3I56 H;  1YJ9 H;  3CCR H;  1Q82 J;  1VQL H;  3PIO J;  1QVG H;  4WF9 J;  1VQM H;  1VQP H;  3DLL J;  1Q7Y J;  1KC8 J;  1Y69 K;  2PA2 A;  1VQN H;  3CCL H;  1Q81 J;  2ZJQ J;  3CCQ H;  4WFB J;  3CME H;  2QEX H;  1N8R J;  5HL7 J;  4IOA J;  2ZJP J;  1M90 J;  4U67 J;  1VQK H;  3CC4 H;  1K8A J;  3J7Z M;  5MLC O;  2OTL H;  3CCJ H;  1YIJ H;  5DM6 J;  1S72 H;  5GAD N;  1WKI A;  3CPW H;  3CCE H;  1YHQ H;  3PIP J;  1KD1 J;  4IO9 J;  3CCM H;  1VQ8 H;  2OTJ H;  4IOC J;  4WCE J;  1VQ7 H;  3CXC H;  4WFA J;  3CCV H;  1KQS H;  1M1K J;  3CC7 H;  3G6E H;  5GAE N;  3CC2 H;  1VQ5 H;  1YJN H;  4UY8 M;  3G4S H;  1VQ9 H;  5JVG J;  5DM7 J;  1YIT H;  1K9M J;  3CMA H;  1JJ2 H;  3CF5 J;  3CD6 H;  5AN9 F;  1YI2 H;  5GAH N;  1YJW H;  2QA4 H;  3I55 H;  1Q86 J;  1VQ6 H;  1QVF H;  3CCU H;  1W2B H;  5GAG N;  1VQO H;  3CCS H;  5H1S O;  3G71 H;  2ZJR J;  1K73 J;  1NJI J;  3OW2 H;  4WFN J;  5JVH J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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