1K8HA

Nmr structure of small protein b (smpb) from aquifex aeolicus
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
133
structure length
133
Chain Sequence
GKSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWKNNKVKVLIALAKGKKLYDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords Small protein B
publication title Structure of small protein B: the protein component of the tmRNA-SmpB system for ribosome rescue.
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 17
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2001-10-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.280.10 Mainly Beta Beta Barrel Small Protein B; Chain: A; Small Protein B; Chain: A; 1k8hA00
1J1HA 2CZJA 1K8HA 1P6VA 1WJXA
chains in the Genus database with same CATH superfamily
1J1HA 2CZJA 1K8HA 1P6VA 1WJXA
chains in the Genus database with same CATH topology
1J1HA 2CZJA 1K8HA 1P6VA 1WJXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J1H A;  2CZJ A;  1K8H A;  1P6V A;  1WJX A; 
#chains in the Genus database with same CATH topology
 1J1H A;  2CZJ A;  1K8H A;  1P6V A;  1WJX A; 
#chains in the Genus database with same CATH homology
 1J1H A;  2CZJ A;  1K8H A;  1P6V A;  1WJX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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