1KJ1A

Mannose-specific agglutinin (lectin) from garlic (allium sativum) bulbs complexed with alpha-d-mannose
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
109
structure length
109
Chain Sequence
RNLLTNGEGLYAGQSLDVEPYHFIMQEDCNLVLYDHSTSVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIYGSDIWSTGTYK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords lectin I
publication title Re-refinement using reprocessed data to improve the quality of the structure: a case study involving garlic lectin.
pubmed doi rcsb
total genus 20
structure length 109
sequence length 109
chains with identical sequence P
ec nomenclature
pdb deposition date 2001-12-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.90.10.10 Mainly Beta Orthogonal Prism Agglutinin, subunit A Bulb-type lectin domain 1kj1A00
1B2PA 5T20B 3M7HA 5D9ZA 1NIVA 4H3OA 5J76B 1BWUQ 2D04B 3MEZB 3A0CA 2DPFA 1XD5A 3DZWA 5T20A 3R0EB 1NPLA 5D5GB 5J76A 1DLPA 2D04A 1KJ1A 3MEZA 1JPCA 5T1XB 3R0EA 1MSAA 4PDTA 5D5GA 1BWUA 1XD6A 1KJ1D 3A0EA 3M7JA 5D9ZB 5T1XA 4GC2A 1BWUD 3A0DA 4TKCA 1BWUP 4GC1A
chains in the Genus database with same CATH superfamily
1B2PA 5T20B 3M7HA 5D9ZA 1NIVA 4H3OA 4OITA 5J76B 1BWUQ 2D04B 3MEZB 3A0CA 4LEDA 2DPFA 1XD5A 3DZWA 5T20A 3R0EB 1NPLA 4OKCA 5D5GB 5J76A 1DLPA 2D04A 1KJ1A 3MEZA 1JPCA 4OIZA 5T1XB 3R0EA 1MSAA 4PDTA 5D5GA 1BWUA 1XD6A 1KJ1D 3A0EA 3M7JA 5D9ZB 5T1XA 4LEAA 4GC2A 1BWUD 3A0DA 4TKCA 1BWUP 4GC1A 4LE7A
chains in the Genus database with same CATH topology
1B2PA 5T20B 3M7HA 5D9ZA 1NIVA 4H3OA 5J76B 1BWUQ 2D04B 3MEZB 3A0CA 2DPFA 1XD5A 3DZWA 5T20A 3R0EB 1NPLA 5D5GB 5J76A 1DLPA 2D04A 1KJ1A 3MEZA 1JPCA 5T1XB 3R0EA 1MSAA 4PDTA 5D5GA 1BWUA 1XD6A 1KJ1D 3A0EA 3M7JA 5D9ZB 5T1XA 4GC2A 1BWUD 3A0DA 4TKCA 1BWUP 4GC1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B2P A;  5T20 B;  3M7H A;  5D9Z A;  1NIV A;  4H3O A;  5J76 B;  1BWU Q;  2D04 B;  3MEZ B;  3A0C A;  2DPF A;  1XD5 A;  3DZW A;  5T20 A;  3R0E B;  1NPL A;  5D5G B;  5J76 A;  1DLP A;  2D04 A;  1KJ1 A;  3MEZ A;  1JPC A;  5T1X B;  3R0E A;  1MSA A;  4PDT A;  5D5G A;  1BWU A;  1XD6 A;  1KJ1 D;  3A0E A;  3M7J A;  5D9Z B;  5T1X A;  4GC2 A;  1BWU D;  3A0D A;  4TKC A;  1BWU P;  4GC1 A; 
#chains in the Genus database with same CATH topology
 1B2P A;  5T20 B;  3M7H A;  5D9Z A;  1NIV A;  4H3O A;  4OIT A;  5J76 B;  1BWU Q;  2D04 B;  3MEZ B;  3A0C A;  4LED A;  2DPF A;  1XD5 A;  3DZW A;  5T20 A;  3R0E B;  1NPL A;  4OKC A;  5D5G B;  5J76 A;  1DLP A;  2D04 A;  1KJ1 A;  3MEZ A;  1JPC A;  4OIZ A;  5T1X B;  3R0E A;  1MSA A;  4PDT A;  5D5G A;  1BWU A;  1XD6 A;  1KJ1 D;  3A0E A;  3M7J A;  5D9Z B;  5T1X A;  4LEA A;  4GC2 A;  1BWU D;  3A0D A;  4TKC A;  1BWU P;  4GC1 A;  4LE7 A; 
#chains in the Genus database with same CATH homology
 1B2P A;  5T20 B;  3M7H A;  5D9Z A;  1NIV A;  4H3O A;  5J76 B;  1BWU Q;  2D04 B;  3MEZ B;  3A0C A;  2DPF A;  1XD5 A;  3DZW A;  5T20 A;  3R0E B;  1NPL A;  5D5G B;  5J76 A;  1DLP A;  2D04 A;  1KJ1 A;  3MEZ A;  1JPC A;  5T1X B;  3R0E A;  1MSA A;  4PDT A;  5D5G A;  1BWU A;  1XD6 A;  1KJ1 D;  3A0E A;  3M7J A;  5D9Z B;  5T1X A;  4GC2 A;  1BWU D;  3A0D A;  4TKC A;  1BWU P;  4GC1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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