1KJ1D

Mannose-specific agglutinin (lectin) from garlic (allium sativum) bulbs complexed with alpha-d-mannose
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
109
structure length
109
Chain Sequence
RNILMNDEGLYAGQSLDVEPYHLIMQEDCNLVLYDHSTAVWTTNTDIPGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIYGSDIWSTNTYK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords lectin I
publication title Re-refinement using reprocessed data to improve the quality of the structure: a case study involving garlic lectin.
pubmed doi rcsb
total genus 22
structure length 109
sequence length 109
chains with identical sequence Q
ec nomenclature
pdb deposition date 2001-12-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.90.10.10 Mainly Beta Orthogonal Prism Agglutinin, subunit A Bulb-type lectin domain 1kj1D00
3A0DA 3MEZB 3M7HA 1KJ1D 5J76A 3R0EB 1BWUD 1BWUP 1B2PA 5T1XA 1MSAA 1NIVA 4TKCA 1BWUA 1KJ1A 2D04A 4GC1A 5D5GA 3DZWA 1XD6A 3A0CA 1DLPA 4H3OA 5J76B 1NPLA 5T20A 5T1XB 3A0EA 3M7JA 5D9ZA 4PDTA 3MEZA 2D04B 5D5GB 1BWUQ 3R0EA 2DPFA 4GC2A 1JPCA 1XD5A 5T20B 5D9ZB
chains in the Genus database with same CATH superfamily
3A0DA 3MEZB 3M7HA 1KJ1D 5J76A 3R0EB 4LEDA 1BWUD 1BWUP 1B2PA 5T1XA 1MSAA 1NIVA 4TKCA 1BWUA 1KJ1A 2D04A 4GC1A 5D5GA 3DZWA 1XD6A 3A0CA 1DLPA 4OITA 4H3OA 4OKCA 5J76B 1NPLA 5T20A 5T1XB 3A0EA 3M7JA 4OIZA 5D9ZA 4LE7A 4PDTA 3MEZA 2D04B 5D5GB 1BWUQ 3R0EA 2DPFA 4GC2A 4LEAA 1JPCA 1XD5A 5T20B 5D9ZB
chains in the Genus database with same CATH topology
3A0DA 3MEZB 3M7HA 1KJ1D 5J76A 3R0EB 1BWUD 1BWUP 1B2PA 5T1XA 1MSAA 1NIVA 4TKCA 1BWUA 1KJ1A 2D04A 4GC1A 5D5GA 3DZWA 1XD6A 3A0CA 1DLPA 4H3OA 5J76B 1NPLA 5T20A 5T1XB 3A0EA 3M7JA 5D9ZA 4PDTA 3MEZA 2D04B 5D5GB 1BWUQ 3R0EA 2DPFA 4GC2A 1JPCA 1XD5A 5T20B 5D9ZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A0D A;  3MEZ B;  3M7H A;  1KJ1 D;  5J76 A;  3R0E B;  1BWU D;  1BWU P;  1B2P A;  5T1X A;  1MSA A;  1NIV A;  4TKC A;  1BWU A;  1KJ1 A;  2D04 A;  4GC1 A;  5D5G A;  3DZW A;  1XD6 A;  3A0C A;  1DLP A;  4H3O A;  5J76 B;  1NPL A;  5T20 A;  5T1X B;  3A0E A;  3M7J A;  5D9Z A;  4PDT A;  3MEZ A;  2D04 B;  5D5G B;  1BWU Q;  3R0E A;  2DPF A;  4GC2 A;  1JPC A;  1XD5 A;  5T20 B;  5D9Z B; 
#chains in the Genus database with same CATH topology
 3A0D A;  3MEZ B;  3M7H A;  1KJ1 D;  5J76 A;  3R0E B;  4LED A;  1BWU D;  1BWU P;  1B2P A;  5T1X A;  1MSA A;  1NIV A;  4TKC A;  1BWU A;  1KJ1 A;  2D04 A;  4GC1 A;  5D5G A;  3DZW A;  1XD6 A;  3A0C A;  1DLP A;  4OIT A;  4H3O A;  4OKC A;  5J76 B;  1NPL A;  5T20 A;  5T1X B;  3A0E A;  3M7J A;  4OIZ A;  5D9Z A;  4LE7 A;  4PDT A;  3MEZ A;  2D04 B;  5D5G B;  1BWU Q;  3R0E A;  2DPF A;  4GC2 A;  4LEA A;  1JPC A;  1XD5 A;  5T20 B;  5D9Z B; 
#chains in the Genus database with same CATH homology
 3A0D A;  3MEZ B;  3M7H A;  1KJ1 D;  5J76 A;  3R0E B;  1BWU D;  1BWU P;  1B2P A;  5T1X A;  1MSA A;  1NIV A;  4TKC A;  1BWU A;  1KJ1 A;  2D04 A;  4GC1 A;  5D5G A;  3DZW A;  1XD6 A;  3A0C A;  1DLP A;  4H3O A;  5J76 B;  1NPL A;  5T20 A;  5T1X B;  3A0E A;  3M7J A;  5D9Z A;  4PDT A;  3MEZ A;  2D04 B;  5D5G B;  1BWU Q;  3R0E A;  2DPF A;  4GC2 A;  1JPC A;  1XD5 A;  5T20 B;  5D9Z B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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