1N7VA

The receptor-binding protein p2 of bacteriophage prd1: crystal form iii
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
555
structure length
533
Chain Sequence
ANFNVPKLGVFPVAAVFDIDNVPEDSSATGSRWLPSIYQGGNYWGGGPQALHAQVSNFDSSNRLPYNPRTENNPAGNCAFAFNPFGQYISNISSAQSVHRRIYGIDLNDEPLFSPNAASITNGGNPTMSQDTGYHNIGPINTAYKAEIFRPVNPLPMSDTAPDPETLEPGQTEPLIKSDGVYSNSGIASFIFDRPVTEPNPNWPPLPPPVIPIIYPTPALGIGAAAAYGFGYQVTVYRWEEIPVEFLNPEGSPCAYEAGIILVRQTSNPMNAVAGRLVPYVEDIAVDIFLTGKFFTLNPPLRITNNYFADDEVKENTVTIGNYTTTLSSAYYAVYKTDGYGGATCFIASGGAGISALVQLQDNSVLDVLYYSLPLSLGGSKAAIDEWVANNCGLFPMSGGLDKTTLLEIPRRQLEAINPQDGPGQYDLFILDDSGAYASFSSFIGYPEAAYYVAGAATFMDVENPDEIIFILRNGAGWYACEIGDALKIADDEFDSVDYFAYRGGVMFIGSARYTEGGDPLPIKYRAIIPGLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The Receptor Binding Protein P2 of PRD1, a Virus Targeting Antibiotic-Resistant Bacteria, Has a Novel Fold Suggesting Multiple Functions.
pubmed doi rcsb
source organism Enterobacteria phage prd1
molecule tags Viral protein
molecule keywords Adsorption protein P2
total genus 118
structure length 533
sequence length 555
ec nomenclature
pdb deposition date 2002-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09214 Prd1-P2 Bacteriophage Prd1, adsorption protein P2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.330.10 Mainly Beta Sandwich receptor-binding protein prd1-p2, domain 2 receptor-binding protein prd1-p2, domain 2 1n7vA02
2.70.250.10 Mainly Beta Distorted Sandwich receptor-binding protein prd1-p2, domain 3 receptor-binding protein prd1-p2, domain 3 1n7vA03
2.105.10.10 Mainly Beta 3 Propeller Pseudo beta propeller Pseudo beta propeller 1n7vA01
1N7UA 1N7VA
chains in the Genus database with same CATH superfamily
1N7UA 1N7VA
chains in the Genus database with same CATH topology
1N7UA 1N7VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N7U A;  1N7V A; 
#chains in the Genus database with same CATH topology
 1N7U A;  1N7V A; 
#chains in the Genus database with same CATH homology
 1N7U A;  1N7V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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