1NHCA

Structural insights into the processivity of endopolygalacturonase i from aspergillus niger
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
336
structure length
336
Chain Sequence
STCTFTSASEASESISSCSDVVLSSIEVPAGETLDLSDAADGSTITFEGTTSFGYKEWKGPLIRFGGKDLTVTMADGAVIDGDGSRWWDSKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISVQATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGESISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYENGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWSGVDLSGGKTSDKCENVPSGASC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Polygalacturonase I
publication title Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger.
pubmed doi rcsb
source organism Aspergillus niger
total genus 127
structure length 336
sequence length 336
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.2.1.15: Endo-polygalacturonase.
pdb deposition date 2002-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1nhcA00
1O8HA 1AIRA 4PMHA 2NSPA 2PYHA 3EQOA 2NTPA 4HWVA 4XKVA 3B4NA 4XR6A 3VSVA 1O8GA 4AVZA 4NK6A 5C1EA 4YZAA 1PE9A 4XLCA 3UW0A 1DBGA 1OFLA 4OJOA 4Z03A 1O8DA 1VBLA 4XL9A 3GQ8A 3LMWA 2PYGA 1O8FA 2O17A 5AMVA 2UVEA 2NT6A 2NT9A 3WWGA 1DBOA 4U4BA 3VSUA 4OJ5A 1IB4A 2VBMA 4XN0A 2QXZA 1RWRA 3ZPPA 4U49A 4EW9A 4XOPA 1OOCA 4XQFA 1O88A 5C1CA 3KRGA 4NK8A 2O0WA 4XMYA 4OJ6A 1OGOX 3GQ7A 2Z8GA 3GRHA 1O8KA 1IDKA 2PECA 2VJIA 3ZSCA 4OJLA 4XLFA 4Z05A 4XNFA 1JTAA 3GQAA 4C2LA 2BSPA 2ODLA 4W8SA 3EQNA 1O8IA 2QX3A 1PXZA 1O8JA 3GQ9A 1EE6A 4YZXA 1GQ8A 2NZMA 2X3HA 2O0VA 2O04A 2X6YA 1HG8A 4YZ0A 2NTBA 1CZFA 2X6WA 1OGMX 4XONA 2NSTA 4MXNA 1KTWA 1BN8A 1RU4A 4XLAA 1O8LA 4OZZA 2UVFA 4OZYA 3VMVA 3VSTA 2INUA 2VBEA 4Z06A 3SUCA 4XORA 3B90A 1XG2A 1KCCA 4URRA 1QJVA 4I84A 4OJPA 1K5CA 2X85A 4XOTA 4XLHA 3VMWA 1QCXA 4W8QA 4YZQA 2VJJA 4XM3A 1WMRA 1PLUA 2QY1A 1JRGA 1X0CA 2IQ7A 2NTQA 1IDJA 2O1DA 2VBKA 4XN3A 2X6XA 4YEJA 1NHCA 4MR0A 4W8RA 1IA5A 4XLEA 1O8MA 1KCDA 1O8EA 2EWEA 3T9GA 1H80A 1OFMA 4W8TA 1RMGA 2INVA 3FY3A 3JURA 4XKWA 3B8YA 4YELA 1BHEA
chains in the Genus database with same CATH superfamily
1TYXA 1O8HA 3ML3A 4V02C 1AIRA 4PMHA 2NSPA 2PYHA 2BM6A 1TSPA 3EQOA 3SY2A 2VFMA 2G0YA 2NTPA 3PSSA 4HWVA 4XKVA 3B4NA 3H09A 4YELA 5DNSA 4XR6A 3VSVA 3TH0A 1O8GA 1TYVA 4AVZA 4NK6A 5C1EA 3DU1X 4YZAA 1PE9A 1OFEA 1QQ1A 4XLCA 3UW0A 1DBGA 1OFLA 4OJOA 4Z03A 3N90A 1O8DA 1VBLA 4XL9A 3GQ8A 4YCQA 3LMWA 2PYGA 1O8FA 2O17A 2QYUA 2VFNA 5AMVA 2UVEA 1DABA 2NT6A 4YEIA 2NT9A 2BM5A 1DBOA 3WWGA 3N6ZA 4U4BA 3VSUA 4OJ5A 1IB4A 2VBMA 4XN0A 2QXZA 1RWRA 2W7ZA 3ZPPA 2V5IA 1HF2A 4U49A 4OPWA 4EW9A 3PETA 4XOPA 1QA1A 1OOCA 4XQFA 1O88A 3JX8A 3KRGA 5C1CA 4NK8A 3RIQA 1QA3A 2J8IA 1K8FA 2O0WA 4XMYA 1QA2A 4OJ6A 1OGOX 3NAWA 3GQ7A 2Z8GA 1K4ZA 1KQ5A 3GRHA 1O8KA 1IDKA 2PECA 2VJIA 3LJYA 3ZSCA 4OJLA 4XLFA 4Z05A 4XNFA 1JTAA 3GQAA 3LYCA 2BSPA 2ODLA 4C2LA 4W8SA 2XTXA 3EQNA 1O8IA 1QRBA 2IOUG 2QX3A 1PXZA 1O8JA 1LLZA 3GQ9A 1EE6A 1LM1A 4YZXA 4YDTA 5JLVC 1LLWA 1GQ8A 2NZMA 2X3HA 2O0VA 2O04A 2X6YA 4YFOA 1HG8A 3SZEA 4YZ0A 2NTBA 1CZFA 2VFOA 3NB2A 2F3LA 2XC1A 3BH6B 2BM4A 3P4GA 2X6WA 2XTWA 1OGMX 4KH3A 2VFQA 1QRCA 4XONA 4OM9A 2NSTA 4MXNA 2BX6A 1KTWA 1BN8A 1RU4A 2B0RA 4XLAA 1O8LA 4OZZA 2UVFA 4OZYA 3VMVA 4JRAC 3VSTA 2INUA 2VBEA 4Z06A 3SUCA 4XORA 3B90A 3SQVA 2O6WA 1XG2A 2YUHA 1KCCA 4URRA 1QJVA 4I84A 4OJPA 1K5CA 2XT4A 1TYWA 2X85A 4XOTA 4XLHA 1TYUA 3VMWA 1QCXA 4W8QA 4YZQA 2VJJA 4XM3A 1WMRA 1PLUA 2QY1A 1EA0A 1WXRA 1JRGA 1X0CA 2BM7A 2IQ7A 2J8KA 2NTQA 2XTYA 3PSZA 3SYJA 1IDJA 5JMCB 1EZGA 2O1DA 2VBKA 4XN3A 2X6XA 4YEJA 1NHCA 4MR0A 4W8RA 1IA5A 4XLEA 1O8MA 1L1IA 1KCDA 3AK5A 1O8EA 2EWEA 3T9GA 1H80A 1CLWA 1OFMA 2VFPA 4W8TA 1RMGA 1OFDA 2INVA 3BH7B 3FY3A 3B8YA 2QZAA 3JURA 4XKWA 4YC5A 2XT2A 1BHEA
chains in the Genus database with same CATH topology
1O8HA 1AIRA 4PMHA 2NSPA 2PYHA 3EQOA 2NTPA 4HWVA 4XKVA 3B4NA 4XR6A 3VSVA 1O8GA 4AVZA 4NK6A 5C1EA 4YZAA 1PE9A 4XLCA 3UW0A 1DBGA 1OFLA 4OJOA 4Z03A 1O8DA 1VBLA 4XL9A 3GQ8A 3LMWA 2PYGA 1O8FA 2O17A 5AMVA 2UVEA 2NT6A 2NT9A 3WWGA 1DBOA 4U4BA 3VSUA 4OJ5A 1IB4A 2VBMA 4XN0A 2QXZA 1RWRA 3ZPPA 4U49A 4EW9A 4XOPA 1OOCA 4XQFA 1O88A 5C1CA 3KRGA 4NK8A 2O0WA 4XMYA 4OJ6A 1OGOX 3GQ7A 2Z8GA 3GRHA 1O8KA 1IDKA 2PECA 2VJIA 3ZSCA 4OJLA 4XLFA 4Z05A 4XNFA 1JTAA 3GQAA 4C2LA 2BSPA 2ODLA 4W8SA 3EQNA 1O8IA 2QX3A 1PXZA 1O8JA 3GQ9A 1EE6A 4YZXA 1GQ8A 2NZMA 2X3HA 2O0VA 2O04A 2X6YA 1HG8A 4YZ0A 2NTBA 1CZFA 2X6WA 1OGMX 4XONA 2NSTA 4MXNA 1KTWA 1BN8A 1RU4A 4XLAA 1O8LA 4OZZA 2UVFA 4OZYA 3VMVA 3VSTA 2INUA 2VBEA 4Z06A 3SUCA 4XORA 3B90A 1XG2A 1KCCA 4URRA 1QJVA 4I84A 4OJPA 1K5CA 2X85A 4XOTA 4XLHA 3VMWA 1QCXA 4W8QA 4YZQA 2VJJA 4XM3A 1WMRA 1PLUA 2QY1A 1JRGA 1X0CA 2IQ7A 2NTQA 1IDJA 2O1DA 2VBKA 4XN3A 2X6XA 4YEJA 1NHCA 4MR0A 4W8RA 1IA5A 4XLEA 1O8MA 1KCDA 1O8EA 2EWEA 3T9GA 1H80A 1OFMA 4W8TA 1RMGA 2INVA 3FY3A 3JURA 4XKWA 3B8YA 4YELA 1BHEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8H A;  1AIR A;  4PMH A;  2NSP A;  2PYH A;  3EQO A;  2NTP A;  4HWV A;  4XKV A;  3B4N A;  4XR6 A;  3VSV A;  1O8G A;  4AVZ A;  4NK6 A;  5C1E A;  4YZA A;  1PE9 A;  4XLC A;  3UW0 A;  1DBG A;  1OFL A;  4OJO A;  4Z03 A;  1O8D A;  1VBL A;  4XL9 A;  3GQ8 A;  3LMW A;  2PYG A;  1O8F A;  2O17 A;  5AMV A;  2UVE A;  2NT6 A;  2NT9 A;  3WWG A;  1DBO A;  4U4B A;  3VSU A;  4OJ5 A;  1IB4 A;  2VBM A;  4XN0 A;  2QXZ A;  1RWR A;  3ZPP A;  4U49 A;  4EW9 A;  4XOP A;  1OOC A;  4XQF A;  1O88 A;  5C1C A;  3KRG A;  4NK8 A;  2O0W A;  4XMY A;  4OJ6 A;  1OGO X;  3GQ7 A;  2Z8G A;  3GRH A;  1O8K A;  1IDK A;  2PEC A;  2VJI A;  3ZSC A;  4OJL A;  4XLF A;  4Z05 A;  4XNF A;  1JTA A;  3GQA A;  4C2L A;  2BSP A;  2ODL A;  4W8S A;  3EQN A;  1O8I A;  2QX3 A;  1PXZ A;  1O8J A;  3GQ9 A;  1EE6 A;  4YZX A;  1GQ8 A;  2NZM A;  2X3H A;  2O0V A;  2O04 A;  2X6Y A;  1HG8 A;  4YZ0 A;  2NTB A;  1CZF A;  2X6W A;  1OGM X;  4XON A;  2NST A;  4MXN A;  1KTW A;  1BN8 A;  1RU4 A;  4XLA A;  1O8L A;  4OZZ A;  2UVF A;  4OZY A;  3VMV A;  3VST A;  2INU A;  2VBE A;  4Z06 A;  3SUC A;  4XOR A;  3B90 A;  1XG2 A;  1KCC A;  4URR A;  1QJV A;  4I84 A;  4OJP A;  1K5C A;  2X85 A;  4XOT A;  4XLH A;  3VMW A;  1QCX A;  4W8Q A;  4YZQ A;  2VJJ A;  4XM3 A;  1WMR A;  1PLU A;  2QY1 A;  1JRG A;  1X0C A;  2IQ7 A;  2NTQ A;  1IDJ A;  2O1D A;  2VBK A;  4XN3 A;  2X6X A;  4YEJ A;  1NHC A;  4MR0 A;  4W8R A;  1IA5 A;  4XLE A;  1O8M A;  1KCD A;  1O8E A;  2EWE A;  3T9G A;  1H80 A;  1OFM A;  4W8T A;  1RMG A;  2INV A;  3FY3 A;  3JUR A;  4XKW A;  3B8Y A;  4YEL A;  1BHE A; 
#chains in the Genus database with same CATH topology
 1TYX A;  1O8H A;  3ML3 A;  4V02 C;  1AIR A;  4PMH A;  2NSP A;  2PYH A;  2BM6 A;  1TSP A;  3EQO A;  3SY2 A;  2VFM A;  2G0Y A;  2NTP A;  3PSS A;  4HWV A;  4XKV A;  3B4N A;  3H09 A;  4YEL A;  5DNS A;  4XR6 A;  3VSV A;  3TH0 A;  1O8G A;  1TYV A;  4AVZ A;  4NK6 A;  5C1E A;  3DU1 X;  4YZA A;  1PE9 A;  1OFE A;  1QQ1 A;  4XLC A;  3UW0 A;  1DBG A;  1OFL A;  4OJO A;  4Z03 A;  3N90 A;  1O8D A;  1VBL A;  4XL9 A;  3GQ8 A;  4YCQ A;  3LMW A;  2PYG A;  1O8F A;  2O17 A;  2QYU A;  2VFN A;  5AMV A;  2UVE A;  1DAB A;  2NT6 A;  4YEI A;  2NT9 A;  2BM5 A;  1DBO A;  3WWG A;  3N6Z A;  4U4B A;  3VSU A;  4OJ5 A;  1IB4 A;  2VBM A;  4XN0 A;  2QXZ A;  1RWR A;  2W7Z A;  3ZPP A;  2V5I A;  1HF2 A;  4U49 A;  4OPW A;  4EW9 A;  3PET A;  4XOP A;  1QA1 A;  1OOC A;  4XQF A;  1O88 A;  3JX8 A;  3KRG A;  5C1C A;  4NK8 A;  3RIQ A;  1QA3 A;  2J8I A;  1K8F A;  2O0W A;  4XMY A;  1QA2 A;  4OJ6 A;  1OGO X;  3NAW A;  3GQ7 A;  2Z8G A;  1K4Z A;  1KQ5 A;  3GRH A;  1O8K A;  1IDK A;  2PEC A;  2VJI A;  3LJY A;  3ZSC A;  4OJL A;  4XLF A;  4Z05 A;  4XNF A;  1JTA A;  3GQA A;  3LYC A;  2BSP A;  2ODL A;  4C2L A;  4W8S A;  2XTX A;  3EQN A;  1O8I A;  1QRB A;  2IOU G;  2QX3 A;  1PXZ A;  1O8J A;  1LLZ A;  3GQ9 A;  1EE6 A;  1LM1 A;  4YZX A;  4YDT A;  5JLV C;  1LLW A;  1GQ8 A;  2NZM A;  2X3H A;  2O0V A;  2O04 A;  2X6Y A;  4YFO A;  1HG8 A;  3SZE A;  4YZ0 A;  2NTB A;  1CZF A;  2VFO A;  3NB2 A;  2F3L A;  2XC1 A;  3BH6 B;  2BM4 A;  3P4G A;  2X6W A;  2XTW A;  1OGM X;  4KH3 A;  2VFQ A;  1QRC A;  4XON A;  4OM9 A;  2NST A;  4MXN A;  2BX6 A;  1KTW A;  1BN8 A;  1RU4 A;  2B0R A;  4XLA A;  1O8L A;  4OZZ A;  2UVF A;  4OZY A;  3VMV A;  4JRA C;  3VST A;  2INU A;  2VBE A;  4Z06 A;  3SUC A;  4XOR A;  3B90 A;  3SQV A;  2O6W A;  1XG2 A;  2YUH A;  1KCC A;  4URR A;  1QJV A;  4I84 A;  4OJP A;  1K5C A;  2XT4 A;  1TYW A;  2X85 A;  4XOT A;  4XLH A;  1TYU A;  3VMW A;  1QCX A;  4W8Q A;  4YZQ A;  2VJJ A;  4XM3 A;  1WMR A;  1PLU A;  2QY1 A;  1EA0 A;  1WXR A;  1JRG A;  1X0C A;  2BM7 A;  2IQ7 A;  2J8K A;  2NTQ A;  2XTY A;  3PSZ A;  3SYJ A;  1IDJ A;  5JMC B;  1EZG A;  2O1D A;  2VBK A;  4XN3 A;  2X6X A;  4YEJ A;  1NHC A;  4MR0 A;  4W8R A;  1IA5 A;  4XLE A;  1O8M A;  1L1I A;  1KCD A;  3AK5 A;  1O8E A;  2EWE A;  3T9G A;  1H80 A;  1CLW A;  1OFM A;  2VFP A;  4W8T A;  1RMG A;  1OFD A;  2INV A;  3BH7 B;  3FY3 A;  3B8Y A;  2QZA A;  3JUR A;  4XKW A;  4YC5 A;  2XT2 A;  1BHE A; 
#chains in the Genus database with same CATH homology
 1O8H A;  1AIR A;  4PMH A;  2NSP A;  2PYH A;  3EQO A;  2NTP A;  4HWV A;  4XKV A;  3B4N A;  4XR6 A;  3VSV A;  1O8G A;  4AVZ A;  4NK6 A;  5C1E A;  4YZA A;  1PE9 A;  4XLC A;  3UW0 A;  1DBG A;  1OFL A;  4OJO A;  4Z03 A;  1O8D A;  1VBL A;  4XL9 A;  3GQ8 A;  3LMW A;  2PYG A;  1O8F A;  2O17 A;  5AMV A;  2UVE A;  2NT6 A;  2NT9 A;  3WWG A;  1DBO A;  4U4B A;  3VSU A;  4OJ5 A;  1IB4 A;  2VBM A;  4XN0 A;  2QXZ A;  1RWR A;  3ZPP A;  4U49 A;  4EW9 A;  4XOP A;  1OOC A;  4XQF A;  1O88 A;  5C1C A;  3KRG A;  4NK8 A;  2O0W A;  4XMY A;  4OJ6 A;  1OGO X;  3GQ7 A;  2Z8G A;  3GRH A;  1O8K A;  1IDK A;  2PEC A;  2VJI A;  3ZSC A;  4OJL A;  4XLF A;  4Z05 A;  4XNF A;  1JTA A;  3GQA A;  4C2L A;  2BSP A;  2ODL A;  4W8S A;  3EQN A;  1O8I A;  2QX3 A;  1PXZ A;  1O8J A;  3GQ9 A;  1EE6 A;  4YZX A;  1GQ8 A;  2NZM A;  2X3H A;  2O0V A;  2O04 A;  2X6Y A;  1HG8 A;  4YZ0 A;  2NTB A;  1CZF A;  2X6W A;  1OGM X;  4XON A;  2NST A;  4MXN A;  1KTW A;  1BN8 A;  1RU4 A;  4XLA A;  1O8L A;  4OZZ A;  2UVF A;  4OZY A;  3VMV A;  3VST A;  2INU A;  2VBE A;  4Z06 A;  3SUC A;  4XOR A;  3B90 A;  1XG2 A;  1KCC A;  4URR A;  1QJV A;  4I84 A;  4OJP A;  1K5C A;  2X85 A;  4XOT A;  4XLH A;  3VMW A;  1QCX A;  4W8Q A;  4YZQ A;  2VJJ A;  4XM3 A;  1WMR A;  1PLU A;  2QY1 A;  1JRG A;  1X0C A;  2IQ7 A;  2NTQ A;  1IDJ A;  2O1D A;  2VBK A;  4XN3 A;  2X6X A;  4YEJ A;  1NHC A;  4MR0 A;  4W8R A;  1IA5 A;  4XLE A;  1O8M A;  1KCD A;  1O8E A;  2EWE A;  3T9G A;  1H80 A;  1OFM A;  4W8T A;  1RMG A;  2INV A;  3FY3 A;  3JUR A;  4XKW A;  3B8Y A;  4YEL A;  1BHE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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