1NVPA

Human tfiia/tbp/dna complex
Total Genus 45
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
180
structure length
180
Chain Sequence
SGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription/dna
molecule keywords 5'-D(*GP*GP*GP*GP*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*G)-3'
publication title Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes.
pubmed doi rcsb
source organism Homo sapiens
total genus 45
structure length 180
sequence length 180
ec nomenclature
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1nvpA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1nvpA02
2IV9A 2IV8A 1QNBA 1JFIC 3VN5A 2D0AA 1QN7A 1QNCA 1NH2A 2G30A 1QN9A 4RODB 1C9BB 3OC3C 2D0CA 1E42A 1QN8A 5IYDP 1VTLE 1B9KA 1KY7A 1QTSA 2D0BA 3HS8A 1VTOA 1QN6A 1KY6A 5IYBP 1KYUA 3OCIA 1QNAA 4ROCB 1PZDA 1YTFA 1VOLB 3ASMA 1KYDA 2MJ7A 3EIKA 1QN4A 1QN3A 1NVPA 1R4XA 5IYCP 1NGMA 1QNEA 2VJ0A 1AISA 1RM1A 1TBPA 1QN5A 3HS9A 4B0AA 4WZSD 1TGHA 4PY5A 1VOKA 4ROEB 3H1ZA 1CDWA 1KYFA 1MP9A 1YTBA 2Z8UA 1TBAB 1D3UA 1W80A 1QTPA 1PCZA
chains in the Genus database with same CATH superfamily
2IV9A 3OLPA 5BMNA 2HL8A 3VN5A 1KO9A 1P5DX 2Y8LA 4CFFA 3KTUA 1YQKA 3I0XA 1E42A 2F7LA 1LWVA 2YH5A 1QTSA 2D0BA 1VTOA 3OSEA 1LWWA 4BJUA 3RSMA 1KY6A 1N3CA 1KYUA 1PZDA 2PWWA 1N39A 3ASMA 1V5SA 2H5AX 4C7PA 3OSMA 2NOBA 2MZ8A 3EAYA 2LAEA 1AISA 1QNEA 2NOIA 1TUOA 1JDYA 2NVMA 4I8OA 3HS9A 4DULA 4WZSD 1YQRA 1HU0A 1VOKA 3RPJA 3H1ZA 3CWUA 2H4LX 2NOFA 3OSTA 2FUVA 1QN4A 2HL9A 2QREA 3CVTA 2FGTA 3IH7A 1QNBA 4EAGA 3F0ZA 3OH6A 3D4VA 2OOXA 1QN7A 2OOYA 4MRQA 1QN9A 4RODB 1QN8A 2NOEA 5IYDP 2DKCA 1B9KA 3CWSA 1C4GA 3ULXA 1WQAA 5IYBP 2JHNA 3OCIA 2JHJA 1C47A 4ROCB 2HZSA 2HKPA 1M5Q1 1PVSA 1R4XA 2QRCA 5HSHA 2V92A 4EAJA 2NOLA 1WJWA 3D7QA 3I0WA 4ROEB 1DIZA 2DKAA 2EHBD 1Q9UA 4WX8A 5F9CA 1YQMA 2Y8QA 2QRDA 4EALA 1EUVA 2DKDA 3CVSA 2JPIA 1K35A 2V8QA 2Z0FA 4EAKA 1LXTA 3ENOC 1T6AA 2QLVA 1MPGA 3SNSA 4EJZA 3TDHA 3PMGA 2NOHA 2D0AA 1M3HA 5BMPA 4EAIA 2G30A 1NH2A 3T4NA 2FKFA 2D0CA 4WXAA 1VTLE 1P5GX 1KY7A 1QN6A 1LWYA 4IL8A 1N3AA 1KFQA 1QNAA 1VOLB 1KYDA 1QN3A 3EIKA 4D7RA 4D7QA 5JN5A 1NVPA 1XSZA 2FKMX 3DPUA 2VJ0A 1QN5A 3NA5A 3PDKA 4PY5A 1UT4A 2V9JA 2XHIA 3CW7A 5KL0A 1KFIA 1MP9A 3OH9A 1D3UA 2NOZA 1W80A 1QTPA 3DPTA 1J3MA 1PCZA 3OGDA 2O3OA 3ENCA 2R5XA 2IV8A 3I3WA 1JFIC 5AN4A 3KRMA 3TE5A 1YQLA 1QNCA 3CWTA 4Q11A 1K2YX 1C9BB 2YA3A 2NWVA 3OC3C 4QG5A 1UT7A 3HS8A 1FN7A 1UL7A 2HZMA 2ZFDB 2I5WA 4TPSA 1YTFA 2NLVA 4EJYA 1VKLA 2MJ7A 3BKQX 3C04A 3CWAA 3F10A 5IYCP 1NGMA 1PCJX 1M3QA 5EPCA 1TBPA 3UW2A 4B0AA 1PCMX 1EBMA 1TGHA 1CDWA 1KYFA 4HJHA 2JOIA 1YTBA 2Z8UA 1TBAB 3N89A 2QR1A 5JMVD 1RM1A
chains in the Genus database with same CATH topology
2IV9A 3VN5A 1KO9A 3KTUA 1YQKA 3I0XA 1E42A 1LWVA 2YH5A 1QTSA 2D0BA 1VTOA 1LWWA 1KY6A 1N3CA 1KYUA 1PZDA 1N39A 3ASMA 3OSMA 2NOBA 2MZ8A 2LAEA 1AISA 1QNEA 2NOIA 4I8OA 4DULA 1HU0A 1EBMA 3HS9A 4WZSD 1YQRA 1VOKA 3RPJA 3H1ZA 2NOFA 3OSTA 1QN4A 2FGTA 3IH7A 1QNBA 3F0ZA 1QN7A 2NOEA 1QN9A 4RODB 1QN8A 5IYDP 1B9KA 3ULXA 5IYBP 3OCIA 4ROCB 2HZSA 1R4XA 2NOLA 3I0WA 4ROEB 1YQMA 3SNSA 4EJZA 2NOHA 2D0AA 1M3HA 1NH2A 2G30A 2D0CA 1VTLE 1KY7A 1QN6A 1LWYA 1N3AA 1VOLB 1QNAA 1KYDA 1QN3A 3EIKA 1NVPA 3DPUA 2VJ0A 1QN5A 4PY5A 1UT4A 2XHIA 1MP9A 1D3UA 2NOZA 1W80A 1QTPA 3DPTA 1PCZA 2O3OA 2IV8A 1JFIC 5AN4A 3KRMA 1YQLA 1QNCA 4Q11A 1C9BB 3OC3C 1UT7A 3HS8A 1FN7A 2HZMA 2I5WA 4TPSA 1YTFA 4EJYA 2MJ7A 3F10A 5IYCP 1NGMA 1M3QA 1TBPA 4B0AA 1TGHA 1CDWA 1KYFA 2JOIA 1YTBA 2Z8UA 1TBAB 3N89A 1RM1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IV9 A;  2IV8 A;  1QNB A;  1JFI C;  3VN5 A;  2D0A A;  1QN7 A;  1QNC A;  1NH2 A;  2G30 A;  1QN9 A;  4ROD B;  1C9B B;  3OC3 C;  2D0C A;  1E42 A;  1QN8 A;  5IYD P;  1VTL E;  1B9K A;  1KY7 A;  1QTS A;  2D0B A;  3HS8 A;  1VTO A;  1QN6 A;  1KY6 A;  5IYB P;  1KYU A;  3OCI A;  1QNA A;  4ROC B;  1PZD A;  1YTF A;  1VOL B;  3ASM A;  1KYD A;  2MJ7 A;  3EIK A;  1QN4 A;  1QN3 A;  1NVP A;  1R4X A;  5IYC P;  1NGM A;  1QNE A;  2VJ0 A;  1AIS A;  1RM1 A;  1TBP A;  1QN5 A;  3HS9 A;  4B0A A;  4WZS D;  1TGH A;  4PY5 A;  1VOK A;  4ROE B;  3H1Z A;  1CDW A;  1KYF A;  1MP9 A;  1YTB A;  2Z8U A;  1TBA B;  1D3U A;  1W80 A;  1QTP A;  1PCZ A; 
#chains in the Genus database with same CATH topology
 2IV9 A;  3OLP A;  5BMN A;  2HL8 A;  3VN5 A;  1KO9 A;  1P5D X;  2Y8L A;  4CFF A;  3KTU A;  1YQK A;  3I0X A;  1E42 A;  2F7L A;  1LWV A;  2YH5 A;  1QTS A;  2D0B A;  1VTO A;  3OSE A;  1LWW A;  4BJU A;  3RSM A;  1KY6 A;  1N3C A;  1KYU A;  1PZD A;  2PWW A;  1N39 A;  3ASM A;  1V5S A;  2H5A X;  4C7P A;  3OSM A;  2NOB A;  2MZ8 A;  3EAY A;  2LAE A;  1AIS A;  1QNE A;  2NOI A;  1TUO A;  1JDY A;  2NVM A;  4I8O A;  3HS9 A;  4DUL A;  4WZS D;  1YQR A;  1HU0 A;  1VOK A;  3RPJ A;  3H1Z A;  3CWU A;  2H4L X;  2NOF A;  3OST A;  2FUV A;  1QN4 A;  2HL9 A;  2QRE A;  3CVT A;  2FGT A;  3IH7 A;  1QNB A;  4EAG A;  3F0Z A;  3OH6 A;  3D4V A;  2OOX A;  1QN7 A;  2OOY A;  4MRQ A;  1QN9 A;  4ROD B;  1QN8 A;  2NOE A;  5IYD P;  2DKC A;  1B9K A;  3CWS A;  1C4G A;  3ULX A;  1WQA A;  5IYB P;  2JHN A;  3OCI A;  2JHJ A;  1C47 A;  4ROC B;  2HZS A;  2HKP A;  1M5Q 1;  1PVS A;  1R4X A;  2QRC A;  5HSH A;  2V92 A;  4EAJ A;  2NOL A;  1WJW A;  3D7Q A;  3I0W A;  4ROE B;  1DIZ A;  2DKA A;  2EHB D;  1Q9U A;  4WX8 A;  5F9C A;  1YQM A;  2Y8Q A;  2QRD A;  4EAL A;  1EUV A;  2DKD A;  3CVS A;  2JPI A;  1K35 A;  2V8Q A;  2Z0F A;  4EAK A;  1LXT A;  3ENO C;  1T6A A;  2QLV A;  1MPG A;  3SNS A;  4EJZ A;  3TDH A;  3PMG A;  2NOH A;  2D0A A;  1M3H A;  5BMP A;  4EAI A;  2G30 A;  1NH2 A;  3T4N A;  2FKF A;  2D0C A;  4WXA A;  1VTL E;  1P5G X;  1KY7 A;  1QN6 A;  1LWY A;  4IL8 A;  1N3A A;  1KFQ A;  1QNA A;  1VOL B;  1KYD A;  1QN3 A;  3EIK A;  4D7R A;  4D7Q A;  5JN5 A;  1NVP A;  1XSZ A;  2FKM X;  3DPU A;  2VJ0 A;  1QN5 A;  3NA5 A;  3PDK A;  4PY5 A;  1UT4 A;  2V9J A;  2XHI A;  3CW7 A;  5KL0 A;  1KFI A;  1MP9 A;  3OH9 A;  1D3U A;  2NOZ A;  1W80 A;  1QTP A;  3DPT A;  1J3M A;  1PCZ A;  3OGD A;  2O3O A;  3ENC A;  2R5X A;  2IV8 A;  3I3W A;  1JFI C;  5AN4 A;  3KRM A;  3TE5 A;  1YQL A;  1QNC A;  3CWT A;  4Q11 A;  1K2Y X;  1C9B B;  2YA3 A;  2NWV A;  3OC3 C;  4QG5 A;  1UT7 A;  3HS8 A;  1FN7 A;  1UL7 A;  2HZM A;  2ZFD B;  2I5W A;  4TPS A;  1YTF A;  2NLV A;  4EJY A;  1VKL A;  2MJ7 A;  3BKQ X;  3C04 A;  3CWA A;  3F10 A;  5IYC P;  1NGM A;  1PCJ X;  1M3Q A;  5EPC A;  1TBP A;  3UW2 A;  4B0A A;  1PCM X;  1EBM A;  1TGH A;  1CDW A;  1KYF A;  4HJH A;  2JOI A;  1YTB A;  2Z8U A;  1TBA B;  3N89 A;  2QR1 A;  5JMV D;  1RM1 A; 
#chains in the Genus database with same CATH homology
 2IV9 A;  3VN5 A;  1KO9 A;  3KTU A;  1YQK A;  3I0X A;  1E42 A;  1LWV A;  2YH5 A;  1QTS A;  2D0B A;  1VTO A;  1LWW A;  1KY6 A;  1N3C A;  1KYU A;  1PZD A;  1N39 A;  3ASM A;  3OSM A;  2NOB A;  2MZ8 A;  2LAE A;  1AIS A;  1QNE A;  2NOI A;  4I8O A;  4DUL A;  1HU0 A;  1EBM A;  3HS9 A;  4WZS D;  1YQR A;  1VOK A;  3RPJ A;  3H1Z A;  2NOF A;  3OST A;  1QN4 A;  2FGT A;  3IH7 A;  1QNB A;  3F0Z A;  1QN7 A;  2NOE A;  1QN9 A;  4ROD B;  1QN8 A;  5IYD P;  1B9K A;  3ULX A;  5IYB P;  3OCI A;  4ROC B;  2HZS A;  1R4X A;  2NOL A;  3I0W A;  4ROE B;  1YQM A;  3SNS A;  4EJZ A;  2NOH A;  2D0A A;  1M3H A;  1NH2 A;  2G30 A;  2D0C A;  1VTL E;  1KY7 A;  1QN6 A;  1LWY A;  1N3A A;  1VOL B;  1QNA A;  1KYD A;  1QN3 A;  3EIK A;  1NVP A;  3DPU A;  2VJ0 A;  1QN5 A;  4PY5 A;  1UT4 A;  2XHI A;  1MP9 A;  1D3U A;  2NOZ A;  1W80 A;  1QTP A;  3DPT A;  1PCZ A;  2O3O A;  2IV8 A;  1JFI C;  5AN4 A;  3KRM A;  1YQL A;  1QNC A;  4Q11 A;  1C9B B;  3OC3 C;  1UT7 A;  3HS8 A;  1FN7 A;  2HZM A;  2I5W A;  4TPS A;  1YTF A;  4EJY A;  2MJ7 A;  3F10 A;  5IYC P;  1NGM A;  1M3Q A;  1TBP A;  4B0A A;  1TGH A;  1CDW A;  1KYF A;  2JOI A;  1YTB A;  2Z8U A;  1TBA B;  3N89 A;  1RM1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...