1OMAA

Sequential assignment and structure determination of spider toxin omega-aga-ivb
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
48
structure length
48
Chain Sequence
EDNCIAEDYGKCTWGGTKCCRGRPCRCSMIGTNCECTPRLIMEGLSFA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Sequential assignment and structure determination of spider toxin omega-Aga-IVB.
pubmed doi rcsb
molecule tags Toxin
source organism Agelenopsis aperta
molecule keywords OMEGA-AGA-IVB
total genus 3
structure length 48
sequence length 48
ec nomenclature
pdb deposition date 1993-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02819 Toxin_9 Spider toxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.40.10 Few Secondary Structures Irregular Omega-AgatoxinV Omega-AgatoxinV 1omaA00
1G9PA 1IVAA 1OAVA 2ROOA 1AGGA 1QDPA 1OMAA 1VTXA 1OAWA
chains in the Genus database with same CATH superfamily
2DCVA 1G9PA 1HY9A 1IVAA 1OAVA 1H59B 2DCWA 2ROOA 1AGGA 1BOEA 1QDPA 1OMAA 1XI7A 1VTXA 1CIXA 1XJ1A 1OAWA
chains in the Genus database with same CATH topology
2DCVA 1G9PA 1IVAA 1OAVA 1H59B 2DCWA 2ROOA 1AGGA 1BOEA 1QDPA 1OMAA 1XI7A 1VTXA 1CIXA 1XJ1A 1OAWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G9P A;  1IVA A;  1OAV A;  2ROO A;  1AGG A;  1QDP A;  1OMA A;  1VTX A;  1OAW A; 
#chains in the Genus database with same CATH topology
 2DCV A;  1G9P A;  1HY9 A;  1IVA A;  1OAV A;  1H59 B;  2DCW A;  2ROO A;  1AGG A;  1BOE A;  1QDP A;  1OMA A;  1XI7 A;  1VTX A;  1CIX A;  1XJ1 A;  1OAW A; 
#chains in the Genus database with same CATH homology
 2DCV A;  1G9P A;  1IVA A;  1OAV A;  1H59 B;  2DCW A;  2ROO A;  1AGG A;  1BOE A;  1QDP A;  1OMA A;  1XI7 A;  1VTX A;  1CIX A;  1XJ1 A;  1OAW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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