1PPRM

Peridinin-chlorophyll-protein of amphidinium carterae
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
312
structure length
312
Chain Sequence
DEIGDAAKKLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSISGPNGVTSRADWDNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVNGADAEKAYEGFLAFKDVVKKSQVTSAAGPATVPSGDKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTSAADYAAVNAALGRVIASVPKSTVMDVYNAMAGVTDTSIPLNMFSKVNPLDANAAAKAFYTFKDVVQAAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Light-harvesting protein
molecule keywords PERIDININ-CHLOROPHYLL PROTEIN
publication title Structural basis of light harvesting by carotenoids: peridinin-chlorophyll-protein from Amphidinium carterae.
pubmed rcsb
total genus 128
structure length 312
sequence length 312
chains with identical sequence N, O
ec nomenclature
pdb deposition date 1996-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF02429 PCP Peridinin-chlorophyll A binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.40.10.10 Mainly Alpha Alpha solenoid Peridinin-chlorophyll Protein, Chain M Peridinin-chlorophyll A binding 1pprM01
1.40.10.10 Mainly Alpha Alpha solenoid Peridinin-chlorophyll Protein, Chain M Peridinin-chlorophyll A binding 1pprM02
3IISM 2X1ZM 2C9EA 1PPRM 3IIUM 2X21M 2X20M
chains in the Genus database with same CATH superfamily
3IISM 2X1ZM 2C9EA 1PPRM 3IIUM 2X21M 2X20M
chains in the Genus database with same CATH topology
3IISM 2X1ZM 2C9EA 1PPRM 3IIUM 2X21M 2X20M
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IIS M;  2X1Z M;  2C9E A;  1PPR M;  3IIU M;  2X21 M;  2X20 M; 
#chains in the Genus database with same CATH topology
 3IIS M;  2X1Z M;  2C9E A;  1PPR M;  3IIU M;  2X21 M;  2X20 M; 
#chains in the Genus database with same CATH homology
 3IIS M;  2X1Z M;  2C9E A;  1PPR M;  3IIU M;  2X21 M;  2X20 M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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