1Q82J

Crystal structure of cc-puromycin bound to the a-site of the 50s ribosomal subunit
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
167
structure length
156
Chain Sequence
KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKDGMRAPFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAGNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural Insights Into Peptide Bond Formation
pubmed doi rcsb
total genus 27
structure length 156
sequence length 167
ec nomenclature
pdb deposition date 2003-08-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1q82J00
5GADN 3DLLJ 1VQ6H 5H1SO 2QEXH 1Q7YJ 1VQ5H 3CCEH 5JVGJ 1S72H 1QVFH 1VQNH 3CMEH 5MLCO 2OTLH 1NJIJ 3CC2H 1K8AJ 1JJ2H 2ZJQJ 1N8RJ 1KD1J 4WFBJ 2ZJRJ 3CCRH 1YHQH 3CCUH 1Q82J 5DM7J 5JVHJ 1Q86J 2PA2A 3CD6H 4WCEJ 3CC4H 3CCVH 1VQMH 5GAHN 1YITH 3G6EH 4WFAJ 1YJNH 5AN9F 1K9MJ 1VQKH 5HL7J 3CC7H 3CPWH 4U67J 3OW2H 3J7ZM 5GAGN 1YI2H 1VQOH 2OTJH 1YJ9H 1YIJH 1M1KJ 3CMAH 5GAEN 1WKIA 3PIOJ 3G71H 3G4SH 4IO9J 3CCMH 3CCSH 3I55H 1KC8J 3CF5J 1Y69K 1YJWH 3CCQH 2ZJPJ 3CXCH 1KQSH 3CCLH 1VQPH 4UY8M 5DM6J 4IOAJ 4IOCJ 3PIPJ 1K73J 1VQLH 4WFNJ 2QA4H 1W2BH 3I56H 1VQ8H 3CCJH 1Q81J 1VQ4H 1VQ9H 4WF9J 1M90J 1QVGH 1VQ7H
chains in the Genus database with same CATH superfamily
5GADN 4USAA 3DLLJ 1FO4A 1VQ6H 4KWVA 1N61B 1V97A 3RPFA 5H1SO 2QEXH 1Q7YJ 3C2FA 1YTEA 3NVZC 3H5QA 3TQVA 4C80A 3BIIE 1WYGA 1VQ5H 2I14A 1VDVA 5AYZA 3AMZA 3CCEH 5JVGJ 1S72H 1JRPB 1QVFH 3AM9A 1N60B 3SR6C 3NS1C 3AN1A 1VQNH 3CMEH 1BRWA 1NVJA 2B7NA 5MLCO 3PAJA 2W3SB 2OTLH 5AYXA 1NJIJ 1VLBA 3CC2H 1K8AJ 4YYYA 1JJ2H 1UOUA 2TPTA 4XR5A 2ZJQJ 1N8RJ 1KD1J 5MPOC 2JBMA 4WFBJ 1ZXIB 1FFUB 2ZJRJ 3VMMA 1QPOA 1SB3A 3CCRH 1YHQH 3CCUH 4C7ZA 3NVVC 1Q82J 2WP4A 5DM7J 5JVHJ 1FIQC 1OTPA 1Q86J 1VQ7H 3C2VA 2PA2A 3CD6H 1AZYA 1QPNA 1DGJA 4WCEJ 3CC4H 3CCVH 2W54B 1VQMH 5GAHN 5HULA 1YITH 3G6EH 4WFAJ 3WO0A 4US8A 1YJNH 5AN9F 5HUPA 1K9MJ 4C7YA 1VQKH 5HL7J 1N62B 4KWWA 3CC7H 3CPWH 4U67J 2OMDA 3J7ZM 1QAPA 2WK5A 3OW2H 5GAGN 1YI2H 3NVWC 3L4PA 1FM0E 1VQOH 2OTJH 2WK6A 1YJ9H 1YIJH 3L0GA 1M1KJ 3CMAH 5GAEN 1WKIA 2B7PA 4LHMA 1QPQA 1YTKA 1JROB 3WNZA 3PIOJ 2W3RB 5AYYA 3NRZC 5HUOA 1YTDA 3C2OA 4GA4A 3C2EA 3G4SH 1SIJA 2J0FA 3G71H 2Q5WE 3CCMH 4IO9J 4AP8A 1N5XA 3CCSH 1RM6A 3I55H 5EP8A 3WO1A 1KC8J 1NVIE 2E3TA 3CF5J 1FMAE 1Y69K 1FFVB 1YJWH 4GA5A 4GA6A 3CCQH 4X46A 4YEKA 2ZJPJ 3CXCH 1KQSH 2B7QA 1QPRA 3CCLH 1VQPH 4UY8M 5DM6J 2DSJA 4IOAJ 4IOCJ 3PIPJ 3NVYC 4I9AA 3C2RA 1N5WB 3GNNA 5EY3A 1K73J 1VQLH 4WFNJ 2QA4H 1W2BH 1X1OA 3I56H 1VQ8H 3ETRC 2I1OA 4EADA 3EUB4 2QIEA 1O4UA 4ZOHA 3CCJH 1Q81J 1N63B 1VQ4H 4US9A 1VQ9H 4WF9J 4EAFA 1M90J 3B9JC 2W55B 1QVGH 3FC4A 3FAHA
chains in the Genus database with same CATH topology
5GADN 3DLLJ 1VQ6H 5H1SO 2QEXH 1Q7YJ 1VQ5H 3CCEH 5JVGJ 1S72H 1QVFH 1VQNH 3CMEH 5MLCO 2OTLH 1NJIJ 3CC2H 1K8AJ 1JJ2H 2ZJQJ 1N8RJ 1KD1J 4WFBJ 2ZJRJ 3CCRH 1YHQH 3CCUH 1Q82J 5DM7J 5JVHJ 1Q86J 2PA2A 3CD6H 4WCEJ 3CC4H 3CCVH 1VQMH 5GAHN 1YITH 3G6EH 4WFAJ 1YJNH 5AN9F 1K9MJ 1VQKH 5HL7J 3CC7H 3CPWH 4U67J 3OW2H 3J7ZM 5GAGN 1YI2H 1VQOH 2OTJH 1YJ9H 1YIJH 1M1KJ 3CMAH 5GAEN 1WKIA 3PIOJ 3G71H 3G4SH 4IO9J 3CCMH 3CCSH 3I55H 1KC8J 3CF5J 1Y69K 1YJWH 3CCQH 2ZJPJ 3CXCH 1KQSH 3CCLH 1VQPH 4UY8M 5DM6J 4IOAJ 4IOCJ 3PIPJ 1K73J 1VQLH 4WFNJ 2QA4H 1W2BH 3I56H 1VQ8H 3CCJH 1Q81J 1VQ4H 1VQ9H 4WF9J 1M90J 1QVGH 1VQ7H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAD N;  3DLL J;  1VQ6 H;  5H1S O;  2QEX H;  1Q7Y J;  1VQ5 H;  3CCE H;  5JVG J;  1S72 H;  1QVF H;  1VQN H;  3CME H;  5MLC O;  2OTL H;  1NJI J;  3CC2 H;  1K8A J;  1JJ2 H;  2ZJQ J;  1N8R J;  1KD1 J;  4WFB J;  2ZJR J;  3CCR H;  1YHQ H;  3CCU H;  1Q82 J;  5DM7 J;  5JVH J;  1Q86 J;  2PA2 A;  3CD6 H;  4WCE J;  3CC4 H;  3CCV H;  1VQM H;  5GAH N;  1YIT H;  3G6E H;  4WFA J;  1YJN H;  5AN9 F;  1K9M J;  1VQK H;  5HL7 J;  3CC7 H;  3CPW H;  4U67 J;  3OW2 H;  3J7Z M;  5GAG N;  1YI2 H;  1VQO H;  2OTJ H;  1YJ9 H;  1YIJ H;  1M1K J;  3CMA H;  5GAE N;  1WKI A;  3PIO J;  3G71 H;  3G4S H;  4IO9 J;  3CCM H;  3CCS H;  3I55 H;  1KC8 J;  3CF5 J;  1Y69 K;  1YJW H;  3CCQ H;  2ZJP J;  3CXC H;  1KQS H;  3CCL H;  1VQP H;  4UY8 M;  5DM6 J;  4IOA J;  4IOC J;  3PIP J;  1K73 J;  1VQL H;  4WFN J;  2QA4 H;  1W2B H;  3I56 H;  1VQ8 H;  3CCJ H;  1Q81 J;  1VQ4 H;  1VQ9 H;  4WF9 J;  1M90 J;  1QVG H;  1VQ7 H; 
#chains in the Genus database with same CATH topology
 5GAD N;  4USA A;  3DLL J;  1FO4 A;  1VQ6 H;  4KWV A;  1N61 B;  1V97 A;  3RPF A;  5H1S O;  2QEX H;  1Q7Y J;  3C2F A;  1YTE A;  3NVZ C;  3H5Q A;  3TQV A;  4C80 A;  3BII E;  1WYG A;  1VQ5 H;  2I14 A;  1VDV A;  5AYZ A;  3AMZ A;  3CCE H;  5JVG J;  1S72 H;  1JRP B;  1QVF H;  3AM9 A;  1N60 B;  3SR6 C;  3NS1 C;  3AN1 A;  1VQN H;  3CME H;  1BRW A;  1NVJ A;  2B7N A;  5MLC O;  3PAJ A;  2W3S B;  2OTL H;  5AYX A;  1NJI J;  1VLB A;  3CC2 H;  1K8A J;  4YYY A;  1JJ2 H;  1UOU A;  2TPT A;  4XR5 A;  2ZJQ J;  1N8R J;  1KD1 J;  5MPO C;  2JBM A;  4WFB J;  1ZXI B;  1FFU B;  2ZJR J;  3VMM A;  1QPO A;  1SB3 A;  3CCR H;  1YHQ H;  3CCU H;  4C7Z A;  3NVV C;  1Q82 J;  2WP4 A;  5DM7 J;  5JVH J;  1FIQ C;  1OTP A;  1Q86 J;  1VQ7 H;  3C2V A;  2PA2 A;  3CD6 H;  1AZY A;  1QPN A;  1DGJ A;  4WCE J;  3CC4 H;  3CCV H;  2W54 B;  1VQM H;  5GAH N;  5HUL A;  1YIT H;  3G6E H;  4WFA J;  3WO0 A;  4US8 A;  1YJN H;  5AN9 F;  5HUP A;  1K9M J;  4C7Y A;  1VQK H;  5HL7 J;  1N62 B;  4KWW A;  3CC7 H;  3CPW H;  4U67 J;  2OMD A;  3J7Z M;  1QAP A;  2WK5 A;  3OW2 H;  5GAG N;  1YI2 H;  3NVW C;  3L4P A;  1FM0 E;  1VQO H;  2OTJ H;  2WK6 A;  1YJ9 H;  1YIJ H;  3L0G A;  1M1K J;  3CMA H;  5GAE N;  1WKI A;  2B7P A;  4LHM A;  1QPQ A;  1YTK A;  1JRO B;  3WNZ A;  3PIO J;  2W3R B;  5AYY A;  3NRZ C;  5HUO A;  1YTD A;  3C2O A;  4GA4 A;  3C2E A;  3G4S H;  1SIJ A;  2J0F A;  3G71 H;  2Q5W E;  3CCM H;  4IO9 J;  4AP8 A;  1N5X A;  3CCS H;  1RM6 A;  3I55 H;  5EP8 A;  3WO1 A;  1KC8 J;  1NVI E;  2E3T A;  3CF5 J;  1FMA E;  1Y69 K;  1FFV B;  1YJW H;  4GA5 A;  4GA6 A;  3CCQ H;  4X46 A;  4YEK A;  2ZJP J;  3CXC H;  1KQS H;  2B7Q A;  1QPR A;  3CCL H;  1VQP H;  4UY8 M;  5DM6 J;  2DSJ A;  4IOA J;  4IOC J;  3PIP J;  3NVY C;  4I9A A;  3C2R A;  1N5W B;  3GNN A;  5EY3 A;  1K73 J;  1VQL H;  4WFN J;  2QA4 H;  1W2B H;  1X1O A;  3I56 H;  1VQ8 H;  3ETR C;  2I1O A;  4EAD A;  3EUB 4;  2QIE A;  1O4U A;  4ZOH A;  3CCJ H;  1Q81 J;  1N63 B;  1VQ4 H;  4US9 A;  1VQ9 H;  4WF9 J;  4EAF A;  1M90 J;  3B9J C;  2W55 B;  1QVG H;  3FC4 A;  3FAH A; 
#chains in the Genus database with same CATH homology
 5GAD N;  3DLL J;  1VQ6 H;  5H1S O;  2QEX H;  1Q7Y J;  1VQ5 H;  3CCE H;  5JVG J;  1S72 H;  1QVF H;  1VQN H;  3CME H;  5MLC O;  2OTL H;  1NJI J;  3CC2 H;  1K8A J;  1JJ2 H;  2ZJQ J;  1N8R J;  1KD1 J;  4WFB J;  2ZJR J;  3CCR H;  1YHQ H;  3CCU H;  1Q82 J;  5DM7 J;  5JVH J;  1Q86 J;  2PA2 A;  3CD6 H;  4WCE J;  3CC4 H;  3CCV H;  1VQM H;  5GAH N;  1YIT H;  3G6E H;  4WFA J;  1YJN H;  5AN9 F;  1K9M J;  1VQK H;  5HL7 J;  3CC7 H;  3CPW H;  4U67 J;  3OW2 H;  3J7Z M;  5GAG N;  1YI2 H;  1VQO H;  2OTJ H;  1YJ9 H;  1YIJ H;  1M1K J;  3CMA H;  5GAE N;  1WKI A;  3PIO J;  3G71 H;  3G4S H;  4IO9 J;  3CCM H;  3CCS H;  3I55 H;  1KC8 J;  3CF5 J;  1Y69 K;  1YJW H;  3CCQ H;  2ZJP J;  3CXC H;  1KQS H;  3CCL H;  1VQP H;  4UY8 M;  5DM6 J;  4IOA J;  4IOC J;  3PIP J;  1K73 J;  1VQL H;  4WFN J;  2QA4 H;  1W2B H;  3I56 H;  1VQ8 H;  3CCJ H;  1Q81 J;  1VQ4 H;  1VQ9 H;  4WF9 J;  1M90 J;  1QVG H;  1VQ7 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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