1QN4A

Crystal structure of the t(-24) adenovirus major late promoter tata box variant bound to wild-type tbp (arabidopsis thaliana tbp isoform 2). tata element recognition by the tata box-binding protein has been conserved throughout evolution.
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
183
structure length
183
Chain Sequence
KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Tata box-binding protein (tbp)
molecule keywords TRANSCRIPTION INITIATION FACTOR TFIID-1
publication title TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 48
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1qn4A01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1qn4A02
3VN5A 1KYUA 1VTLE 1NH2A 1QN9A 1QNBA 1MP9A 1QN4A 1TGHA 2VJ0A 1QN5A 1VOLB 1NVPA 1VTOA 1KYDA 1YTBA 1QNAA 1KY7A 1NGMA 4PY5A 3HS9A 3OC3C 4B0AA 1QNEA 1QN7A 3HS8A 4RODB 1KYFA 1PZDA 1R4XA 1C9BB 1D3UA 2D0AA 1YTFA 1RM1A 2D0BA 5IYDP 1PCZA 3OCIA 1W80A 2IV8A 2Z8UA 1JFIC 1TBAB 3H1ZA 1QN3A 5IYBP 1TBPA 2IV9A 1B9KA 2G30A 1KY6A 2D0CA 2MJ7A 5IYCP 4WZSD 1CDWA 1VOKA 1QNCA 3ASMA 4ROEB 3EIKA 1QN8A 1QTSA 1QTPA 1AISA 4ROCB 1E42A 1QN6A
chains in the Genus database with same CATH superfamily
3RPJA 1VTLE 2NOFA 1QN9A 1QN4A 1WQAA 2ZFDB 5AN4A 5HSHA 3PDKA 1YQLA 1XSZA 4EAGA 1M3QA 1YQKA 1NVPA 4CFFA 1LWWA 1PCMX 1Q9UA 1P5GX 2DKDA 2FUVA 2H4LX 4D7QA 4EAIA 2QR1A 4RODB 3KTUA 1R4XA 1QN7A 1C47A 2D0AA 1JDYA 3OSEA 2YA3A 5IYDP 2DKCA 1PCZA 3EAYA 1UT4A 2XHIA 1W80A 4MRQA 3DPUA 3OGDA 2I5WA 2HL9A 1TBAB 3H1ZA 2NOLA 2IV9A 1N3AA 1B9KA 1WJWA 4WZSD 2FKFA 1CDWA 3KRMA 3I0XA 1DIZA 2NOIA 4ROEB 3EIKA 3F0ZA 1QTSA 1K2YX 4QG5A 4WX8A 1AISA 4ROCB 2Y8QA 2PWWA 2NOHA 4HJHA 3VN5A 4D7RA 3CVSA 1LXTA 5F9CA 2VJ0A 1YQMA 5EPCA 1KFQA 3CW7A 1K35A 3CWUA 3RSMA 1QN5A 1N3CA 4EJZA 5JN5A 3NA5A 3OH6A 1PCJX 1QNEA 3HS8A 4Q11A 1UT7A 5BMPA 4WXAA 1YTFA 3SNSA 5JMVD 1EBMA 1PVSA 2OOYA 5BMNA 1KO9A 5IYBP 2MJ7A 1TBPA 2JOIA 2G30A 4IL8A 3UW2A 3BKQX 4EAKA 1N39A 3T4NA 1E42A 2NOZA 2OOXA 4EALA 3ENOC 3I0WA 3N89A 3ULXA 3DPTA 2NOBA 1V5SA 2NVMA 1KFIA 3ENCA 1J3MA 2HL8A 3OH9A 1VOLB 1VTOA 1KYDA 1M5Q1 3IH7A 1YTBA 1QNAA 3OLPA 3CWSA 2Y8LA 2Z0FA 3PMGA 2FKMX 2FGTA 2NOEA 3C04A 3D4VA 2DKAA 1HU0A 3OC3C 4B0AA 4DULA 1PZDA 2V92A 1C9BB 2F7LA 1MPGA 1RM1A 2D0BA 1TUOA 3OSTA 1EUVA 2NWVA 2IV8A 2Z8UA 3I3WA 1JFIC 1QN3A 3D7QA 1QNCA 1KY6A 2D0CA 2O3OA 2HKPA 2JHJA 2YH5A 1M3HA 2MZ8A 2HZMA 4I8OA 1KYUA 5KL0A 3CWAA 1NH2A 3CWTA 2V9JA 1UL7A 1MP9A 1QNBA 1TGHA 2QRCA 4BJUA 2QREA 1T6AA 3TE5A 4EAJA 3CVTA 1KY7A 2H5AX 3TDHA 1YQRA 1NGMA 1VKLA 4PY5A 3HS9A 1D3UA 1KYFA 1LWYA 2HZSA 2NLVA 4TPSA 4EJYA 2EHBD 2QRDA 3OCIA 2JHNA 1LWVA 3F10A 2LAEA 5IYCP 2JPIA 2R5XA 1FN7A 1VOKA 4C7PA 3ASMA 3OSMA 1QN8A 1C4GA 1P5DX 1QTPA 1QN6A 2V8QA 2QLVA
chains in the Genus database with same CATH topology
3RPJA 1VTLE 2NOFA 1QN9A 1QN4A 5AN4A 1YQLA 1M3QA 1YQKA 1NVPA 1LWWA 3KTUA 1QN7A 4RODB 1R4XA 2D0AA 5IYDP 2XHIA 1PCZA 1UT4A 1W80A 3DPUA 2I5WA 1TBAB 3H1ZA 2NOLA 2IV9A 1N3AA 1B9KA 4WZSD 1CDWA 3KRMA 3I0XA 2NOIA 4ROEB 3EIKA 3F0ZA 1QTSA 1AISA 4ROCB 2NOHA 3VN5A 2VJ0A 1YQMA 1QN5A 4EJZA 1N3CA 1QNEA 4EJYA 3HS8A 4Q11A 1UT7A 1YTFA 3SNSA 1EBMA 1KO9A 5IYBP 1TBPA 2JOIA 2MJ7A 2G30A 1N39A 1E42A 2NOZA 3I0WA 3N89A 3ULXA 3DPTA 2NOBA 1VOLB 1VTOA 1KYDA 3IH7A 1YTBA 1QNAA 2NOEA 2FGTA 1HU0A 3OC3C 4B0AA 4DULA 1PZDA 1C9BB 1RM1A 2D0BA 3OSTA 2IV8A 2Z8UA 1JFIC 1QN3A 1QNCA 1KY6A 2D0CA 2O3OA 1M3HA 2MZ8A 2HZMA 4I8OA 1KYUA 1NH2A 1QNBA 1MP9A 1TGHA 1KY7A 1NGMA 1YQRA 4PY5A 3HS9A 1D3UA 1KYFA 1LWYA 2HZSA 4TPSA 3OCIA 1LWVA 2LAEA 5IYCP 1FN7A 1VOKA 3ASMA 3OSMA 1QN8A 1QTPA 2YH5A 1QN6A 3F10A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VN5 A;  1KYU A;  1VTL E;  1NH2 A;  1QN9 A;  1QNB A;  1MP9 A;  1QN4 A;  1TGH A;  2VJ0 A;  1QN5 A;  1VOL B;  1NVP A;  1VTO A;  1KYD A;  1YTB A;  1QNA A;  1KY7 A;  1NGM A;  4PY5 A;  3HS9 A;  3OC3 C;  4B0A A;  1QNE A;  1QN7 A;  3HS8 A;  4ROD B;  1KYF A;  1PZD A;  1R4X A;  1C9B B;  1D3U A;  2D0A A;  1YTF A;  1RM1 A;  2D0B A;  5IYD P;  1PCZ A;  3OCI A;  1W80 A;  2IV8 A;  2Z8U A;  1JFI C;  1TBA B;  3H1Z A;  1QN3 A;  5IYB P;  1TBP A;  2IV9 A;  1B9K A;  2G30 A;  1KY6 A;  2D0C A;  2MJ7 A;  5IYC P;  4WZS D;  1CDW A;  1VOK A;  1QNC A;  3ASM A;  4ROE B;  3EIK A;  1QN8 A;  1QTS A;  1QTP A;  1AIS A;  4ROC B;  1E42 A;  1QN6 A; 
#chains in the Genus database with same CATH topology
 3RPJ A;  1VTL E;  2NOF A;  1QN9 A;  1QN4 A;  1WQA A;  2ZFD B;  5AN4 A;  5HSH A;  3PDK A;  1YQL A;  1XSZ A;  4EAG A;  1M3Q A;  1YQK A;  1NVP A;  4CFF A;  1LWW A;  1PCM X;  1Q9U A;  1P5G X;  2DKD A;  2FUV A;  2H4L X;  4D7Q A;  4EAI A;  2QR1 A;  4ROD B;  3KTU A;  1R4X A;  1QN7 A;  1C47 A;  2D0A A;  1JDY A;  3OSE A;  2YA3 A;  5IYD P;  2DKC A;  1PCZ A;  3EAY A;  1UT4 A;  2XHI A;  1W80 A;  4MRQ A;  3DPU A;  3OGD A;  2I5W A;  2HL9 A;  1TBA B;  3H1Z A;  2NOL A;  2IV9 A;  1N3A A;  1B9K A;  1WJW A;  4WZS D;  2FKF A;  1CDW A;  3KRM A;  3I0X A;  1DIZ A;  2NOI A;  4ROE B;  3EIK A;  3F0Z A;  1QTS A;  1K2Y X;  4QG5 A;  4WX8 A;  1AIS A;  4ROC B;  2Y8Q A;  2PWW A;  2NOH A;  4HJH A;  3VN5 A;  4D7R A;  3CVS A;  1LXT A;  5F9C A;  2VJ0 A;  1YQM A;  5EPC A;  1KFQ A;  3CW7 A;  1K35 A;  3CWU A;  3RSM A;  1QN5 A;  1N3C A;  4EJZ A;  5JN5 A;  3NA5 A;  3OH6 A;  1PCJ X;  1QNE A;  3HS8 A;  4Q11 A;  1UT7 A;  5BMP A;  4WXA A;  1YTF A;  3SNS A;  5JMV D;  1EBM A;  1PVS A;  2OOY A;  5BMN A;  1KO9 A;  5IYB P;  2MJ7 A;  1TBP A;  2JOI A;  2G30 A;  4IL8 A;  3UW2 A;  3BKQ X;  4EAK A;  1N39 A;  3T4N A;  1E42 A;  2NOZ A;  2OOX A;  4EAL A;  3ENO C;  3I0W A;  3N89 A;  3ULX A;  3DPT A;  2NOB A;  1V5S A;  2NVM A;  1KFI A;  3ENC A;  1J3M A;  2HL8 A;  3OH9 A;  1VOL B;  1VTO A;  1KYD A;  1M5Q 1;  3IH7 A;  1YTB A;  1QNA A;  3OLP A;  3CWS A;  2Y8L A;  2Z0F A;  3PMG A;  2FKM X;  2FGT A;  2NOE A;  3C04 A;  3D4V A;  2DKA A;  1HU0 A;  3OC3 C;  4B0A A;  4DUL A;  1PZD A;  2V92 A;  1C9B B;  2F7L A;  1MPG A;  1RM1 A;  2D0B A;  1TUO A;  3OST A;  1EUV A;  2NWV A;  2IV8 A;  2Z8U A;  3I3W A;  1JFI C;  1QN3 A;  3D7Q A;  1QNC A;  1KY6 A;  2D0C A;  2O3O A;  2HKP A;  2JHJ A;  2YH5 A;  1M3H A;  2MZ8 A;  2HZM A;  4I8O A;  1KYU A;  5KL0 A;  3CWA A;  1NH2 A;  3CWT A;  2V9J A;  1UL7 A;  1MP9 A;  1QNB A;  1TGH A;  2QRC A;  4BJU A;  2QRE A;  1T6A A;  3TE5 A;  4EAJ A;  3CVT A;  1KY7 A;  2H5A X;  3TDH A;  1YQR A;  1NGM A;  1VKL A;  4PY5 A;  3HS9 A;  1D3U A;  1KYF A;  1LWY A;  2HZS A;  2NLV A;  4TPS A;  4EJY A;  2EHB D;  2QRD A;  3OCI A;  2JHN A;  1LWV A;  3F10 A;  2LAE A;  5IYC P;  2JPI A;  2R5X A;  1FN7 A;  1VOK A;  4C7P A;  3ASM A;  3OSM A;  1QN8 A;  1C4G A;  1P5D X;  1QTP A;  1QN6 A;  2V8Q A;  2QLV A; 
#chains in the Genus database with same CATH homology
 3RPJ A;  1VTL E;  2NOF A;  1QN9 A;  1QN4 A;  5AN4 A;  1YQL A;  1M3Q A;  1YQK A;  1NVP A;  1LWW A;  3KTU A;  1QN7 A;  4ROD B;  1R4X A;  2D0A A;  5IYD P;  2XHI A;  1PCZ A;  1UT4 A;  1W80 A;  3DPU A;  2I5W A;  1TBA B;  3H1Z A;  2NOL A;  2IV9 A;  1N3A A;  1B9K A;  4WZS D;  1CDW A;  3KRM A;  3I0X A;  2NOI A;  4ROE B;  3EIK A;  3F0Z A;  1QTS A;  1AIS A;  4ROC B;  2NOH A;  3VN5 A;  2VJ0 A;  1YQM A;  1QN5 A;  4EJZ A;  1N3C A;  1QNE A;  4EJY A;  3HS8 A;  4Q11 A;  1UT7 A;  1YTF A;  3SNS A;  1EBM A;  1KO9 A;  5IYB P;  1TBP A;  2JOI A;  2MJ7 A;  2G30 A;  1N39 A;  1E42 A;  2NOZ A;  3I0W A;  3N89 A;  3ULX A;  3DPT A;  2NOB A;  1VOL B;  1VTO A;  1KYD A;  3IH7 A;  1YTB A;  1QNA A;  2NOE A;  2FGT A;  1HU0 A;  3OC3 C;  4B0A A;  4DUL A;  1PZD A;  1C9B B;  1RM1 A;  2D0B A;  3OST A;  2IV8 A;  2Z8U A;  1JFI C;  1QN3 A;  1QNC A;  1KY6 A;  2D0C A;  2O3O A;  1M3H A;  2MZ8 A;  2HZM A;  4I8O A;  1KYU A;  1NH2 A;  1QNB A;  1MP9 A;  1TGH A;  1KY7 A;  1NGM A;  1YQR A;  4PY5 A;  3HS9 A;  1D3U A;  1KYF A;  1LWY A;  2HZS A;  4TPS A;  3OCI A;  1LWV A;  2LAE A;  5IYC P;  1FN7 A;  1VOK A;  3ASM A;  3OSM A;  1QN8 A;  1QTP A;  2YH5 A;  1QN6 A;  3F10 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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