1QNAA

Crystal structure of the t(-30) adenovirus major late promoter tata box variant bound to wild-type tbp (arabidopsis thaliana tbp isoform 2). tata element recognition by the tata box-binding protein has been conserved throughout evolution.
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
182
structure length
182
Chain Sequence
HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Tata box-binding protein (tbp)
molecule keywords TRANSCRIPTION INITIATION FACTOR TFIID-1
publication title TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 47
structure length 182
sequence length 182
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1qnaA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1qnaA02
2IV9A 1PZDA 3H1ZA 3VN5A 1QNBA 2IV8A 1PCZA 1QTSA 3HS9A 1QN8A 1VTLE 1MP9A 1E42A 1B9KA 4ROCB 4ROEB 2G30A 1VTOA 4PY5A 1KY6A 2D0AA 2VJ0A 1RM1A 3HS8A 1D3UA 5IYBP 2Z8UA 1C9BB 1YTBA 2D0BA 1QN3A 1YTFA 1NH2A 1QNAA 1QN6A 1AISA 1KY7A 1R4XA 1KYUA 3OCIA 1QNCA 1VOLB 2D0CA 1NVPA 1QTPA 1TBPA 1NGMA 1KYDA 3ASMA 3EIKA 1JFIC 1QN4A 1CDWA 3OC3C 4RODB 4B0AA 5IYCP 1QN5A 1TGHA 1QNEA 5IYDP 2MJ7A 1QN9A 4WZSD 1QN7A 1W80A 1VOKA 1KYFA 1TBAB
chains in the Genus database with same CATH superfamily
1PZDA 4I8OA 1QNBA 3IH7A 3RSMA 3TE5A 4ROCB 4ROEB 2QREA 2OOYA 3ULXA 3DPUA 3I0WA 3I0XA 2D0AA 2FGTA 2HZMA 1RM1A 2NOHA 5IYBP 2HZSA 3CW7A 4D7RA 4WX8A 4EAIA 1N3CA 3F0ZA 1R4XA 3OCIA 2NOZA 2I5WA 1EBMA 2FKFA 2FUVA 1VKLA 1KYDA 1YQRA 4EJYA 3OLPA 1Q9UA 1JFIC 3CWTA 2F7LA 4RODB 2YH5A 2QLVA 2NOLA 4B0AA 5IYCP 4D7QA 1WJWA 1PCJX 1P5GX 3KTUA 3OH6A 1KYFA 3UW2A 2JHJA 1XSZA 4WXAA 2V9JA 2NOBA 1M3HA 5EPCA 3VN5A 5KL0A 1WQAA 1PCMX 4EAGA 1KFIA 1MP9A 1LWVA 1N39A 3NA5A 3C04A 1UL7A 2H5AX 2Z8UA 1V5SA 2D0BA 1NH2A 1HU0A 1JDYA 2H4LX 3T4NA 4EAJA 2MZ8A 1LWYA 2NOIA 1KY7A 1QTPA 1QN4A 1CDWA 2NOFA 2JHNA 2FKMX 5BMNA 3D7QA 1C4GA 3BKQX 5HSHA 1UT4A 1UT7A 3N89A 1W80A 1VOKA 1PVSA 3PMGA 2HL9A 2XHIA 4MRQA 3OH9A 2IV8A 3HS9A 2NLVA 1EUVA 5JN5A 1YQLA 2DKDA 1E42A 1B9KA 1VTOA 1KY6A 2QR1A 2Z0FA 2R5XA 3HS8A 3RPJA 1D3UA 4IL8A 1C9BB 2V8QA 1QN3A 1N3AA 5JMVD 1YTFA 3F10A 2NWVA 2OOXA 1QN6A 2V92A 1VOLB 2D0CA 3OGDA 3KRMA 3EAYA 1TBPA 1NGMA 3ASMA 3EIKA 4HJHA 3CWSA 2YA3A 2DKCA 3OC3C 1M5Q1 3OSMA 3I3WA 1YQKA 1QN5A 5AN4A 1QNEA 4CFFA 2NOEA 2EHBD 3D4VA 1T6AA 1LWWA 1TUOA 4WZSD 1QN9A 2NVMA 3PDKA 4EALA 1FN7A 3OSTA 1TBAB 1MPGA 2IV9A 4BJUA 4TPSA 3H1ZA 1PCZA 1QTSA 1QN8A 1VTLE 1M3QA 1P5DX 2JPIA 4QG5A 4DULA 2G30A 1YQMA 4PY5A 3ENOC 5BMPA 2VJ0A 3SNSA 3TDHA 1YTBA 1J3MA 5F9CA 1QNAA 1KFQA 3OSEA 3CWAA 1K35A 1AISA 2HL8A 1KYUA 3CWUA 1QNCA 4EJZA 4EAKA 2PWWA 1NVPA 1C47A 2QRCA 4C7PA 2ZFDB 3DPTA 3ENCA 1DIZA 2JOIA 2O3OA 2DKAA 2QRDA 2Y8LA 1KO9A 1LXTA 4Q11A 2Y8QA 1TGHA 2LAEA 5IYDP 1K2YX 2MJ7A 3CVTA 1QN7A 2HKPA 3CVSA
chains in the Genus database with same CATH topology
1PZDA 4I8OA 1QNBA 3IH7A 4ROEB 4ROCB 3ULXA 3DPUA 3I0WA 3I0XA 2D0AA 2FGTA 2HZMA 1RM1A 2NOHA 5IYBP 2HZSA 1N3CA 3F0ZA 1R4XA 3OCIA 2NOZA 2I5WA 1EBMA 1YQRA 4EJYA 1KYDA 1JFIC 4RODB 2YH5A 2NOLA 4B0AA 5IYCP 3KTUA 1KYFA 2NOBA 1M3HA 3VN5A 1MP9A 1LWVA 1N39A 2Z8UA 2D0BA 1NH2A 1HU0A 1LWYA 2NOIA 2MZ8A 1KY7A 1QTPA 1QN4A 1CDWA 2NOFA 1UT4A 1UT7A 3N89A 1W80A 1VOKA 2XHIA 2IV8A 3HS9A 1YQLA 1E42A 1B9KA 1VTOA 1KY6A 3HS8A 3RPJA 1D3UA 1C9BB 1QN3A 1YTFA 1N3AA 3F10A 1QN6A 1VOLB 2D0CA 3KRMA 1TBPA 1NGMA 3ASMA 3EIKA 3OC3C 3OSMA 1YQKA 1QN5A 5AN4A 1QNEA 2NOEA 1LWWA 1QN9A 4WZSD 1FN7A 3OSTA 1TBAB 2IV9A 4TPSA 3H1ZA 1PCZA 1QTSA 1QN8A 1VTLE 1M3QA 4DULA 2G30A 1YQMA 4PY5A 2VJ0A 3SNSA 1YTBA 1QNAA 1AISA 4EJZA 1KYUA 1QNCA 1NVPA 3DPTA 2JOIA 2O3OA 1KO9A 4Q11A 1TGHA 2LAEA 5IYDP 2MJ7A 1QN7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IV9 A;  1PZD A;  3H1Z A;  3VN5 A;  1QNB A;  2IV8 A;  1PCZ A;  1QTS A;  3HS9 A;  1QN8 A;  1VTL E;  1MP9 A;  1E42 A;  1B9K A;  4ROC B;  4ROE B;  2G30 A;  1VTO A;  4PY5 A;  1KY6 A;  2D0A A;  2VJ0 A;  1RM1 A;  3HS8 A;  1D3U A;  5IYB P;  2Z8U A;  1C9B B;  1YTB A;  2D0B A;  1QN3 A;  1YTF A;  1NH2 A;  1QNA A;  1QN6 A;  1AIS A;  1KY7 A;  1R4X A;  1KYU A;  3OCI A;  1QNC A;  1VOL B;  2D0C A;  1NVP A;  1QTP A;  1TBP A;  1NGM A;  1KYD A;  3ASM A;  3EIK A;  1JFI C;  1QN4 A;  1CDW A;  3OC3 C;  4ROD B;  4B0A A;  5IYC P;  1QN5 A;  1TGH A;  1QNE A;  5IYD P;  2MJ7 A;  1QN9 A;  4WZS D;  1QN7 A;  1W80 A;  1VOK A;  1KYF A;  1TBA B; 
#chains in the Genus database with same CATH topology
 1PZD A;  4I8O A;  1QNB A;  3IH7 A;  3RSM A;  3TE5 A;  4ROC B;  4ROE B;  2QRE A;  2OOY A;  3ULX A;  3DPU A;  3I0W A;  3I0X A;  2D0A A;  2FGT A;  2HZM A;  1RM1 A;  2NOH A;  5IYB P;  2HZS A;  3CW7 A;  4D7R A;  4WX8 A;  4EAI A;  1N3C A;  3F0Z A;  1R4X A;  3OCI A;  2NOZ A;  2I5W A;  1EBM A;  2FKF A;  2FUV A;  1VKL A;  1KYD A;  1YQR A;  4EJY A;  3OLP A;  1Q9U A;  1JFI C;  3CWT A;  2F7L A;  4ROD B;  2YH5 A;  2QLV A;  2NOL A;  4B0A A;  5IYC P;  4D7Q A;  1WJW A;  1PCJ X;  1P5G X;  3KTU A;  3OH6 A;  1KYF A;  3UW2 A;  2JHJ A;  1XSZ A;  4WXA A;  2V9J A;  2NOB A;  1M3H A;  5EPC A;  3VN5 A;  5KL0 A;  1WQA A;  1PCM X;  4EAG A;  1KFI A;  1MP9 A;  1LWV A;  1N39 A;  3NA5 A;  3C04 A;  1UL7 A;  2H5A X;  2Z8U A;  1V5S A;  2D0B A;  1NH2 A;  1HU0 A;  1JDY A;  2H4L X;  3T4N A;  4EAJ A;  2MZ8 A;  1LWY A;  2NOI A;  1KY7 A;  1QTP A;  1QN4 A;  1CDW A;  2NOF A;  2JHN A;  2FKM X;  5BMN A;  3D7Q A;  1C4G A;  3BKQ X;  5HSH A;  1UT4 A;  1UT7 A;  3N89 A;  1W80 A;  1VOK A;  1PVS A;  3PMG A;  2HL9 A;  2XHI A;  4MRQ A;  3OH9 A;  2IV8 A;  3HS9 A;  2NLV A;  1EUV A;  5JN5 A;  1YQL A;  2DKD A;  1E42 A;  1B9K A;  1VTO A;  1KY6 A;  2QR1 A;  2Z0F A;  2R5X A;  3HS8 A;  3RPJ A;  1D3U A;  4IL8 A;  1C9B B;  2V8Q A;  1QN3 A;  1N3A A;  5JMV D;  1YTF A;  3F10 A;  2NWV A;  2OOX A;  1QN6 A;  2V92 A;  1VOL B;  2D0C A;  3OGD A;  3KRM A;  3EAY A;  1TBP A;  1NGM A;  3ASM A;  3EIK A;  4HJH A;  3CWS A;  2YA3 A;  2DKC A;  3OC3 C;  1M5Q 1;  3OSM A;  3I3W A;  1YQK A;  1QN5 A;  5AN4 A;  1QNE A;  4CFF A;  2NOE A;  2EHB D;  3D4V A;  1T6A A;  1LWW A;  1TUO A;  4WZS D;  1QN9 A;  2NVM A;  3PDK A;  4EAL A;  1FN7 A;  3OST A;  1TBA B;  1MPG A;  2IV9 A;  4BJU A;  4TPS A;  3H1Z A;  1PCZ A;  1QTS A;  1QN8 A;  1VTL E;  1M3Q A;  1P5D X;  2JPI A;  4QG5 A;  4DUL A;  2G30 A;  1YQM A;  4PY5 A;  3ENO C;  5BMP A;  2VJ0 A;  3SNS A;  3TDH A;  1YTB A;  1J3M A;  5F9C A;  1QNA A;  1KFQ A;  3OSE A;  3CWA A;  1K35 A;  1AIS A;  2HL8 A;  1KYU A;  3CWU A;  1QNC A;  4EJZ A;  4EAK A;  2PWW A;  1NVP A;  1C47 A;  2QRC A;  4C7P A;  2ZFD B;  3DPT A;  3ENC A;  1DIZ A;  2JOI A;  2O3O A;  2DKA A;  2QRD A;  2Y8L A;  1KO9 A;  1LXT A;  4Q11 A;  2Y8Q A;  1TGH A;  2LAE A;  5IYD P;  1K2Y X;  2MJ7 A;  3CVT A;  1QN7 A;  2HKP A;  3CVS A; 
#chains in the Genus database with same CATH homology
 1PZD A;  4I8O A;  1QNB A;  3IH7 A;  4ROE B;  4ROC B;  3ULX A;  3DPU A;  3I0W A;  3I0X A;  2D0A A;  2FGT A;  2HZM A;  1RM1 A;  2NOH A;  5IYB P;  2HZS A;  1N3C A;  3F0Z A;  1R4X A;  3OCI A;  2NOZ A;  2I5W A;  1EBM A;  1YQR A;  4EJY A;  1KYD A;  1JFI C;  4ROD B;  2YH5 A;  2NOL A;  4B0A A;  5IYC P;  3KTU A;  1KYF A;  2NOB A;  1M3H A;  3VN5 A;  1MP9 A;  1LWV A;  1N39 A;  2Z8U A;  2D0B A;  1NH2 A;  1HU0 A;  1LWY A;  2NOI A;  2MZ8 A;  1KY7 A;  1QTP A;  1QN4 A;  1CDW A;  2NOF A;  1UT4 A;  1UT7 A;  3N89 A;  1W80 A;  1VOK A;  2XHI A;  2IV8 A;  3HS9 A;  1YQL A;  1E42 A;  1B9K A;  1VTO A;  1KY6 A;  3HS8 A;  3RPJ A;  1D3U A;  1C9B B;  1QN3 A;  1YTF A;  1N3A A;  3F10 A;  1QN6 A;  1VOL B;  2D0C A;  3KRM A;  1TBP A;  1NGM A;  3ASM A;  3EIK A;  3OC3 C;  3OSM A;  1YQK A;  1QN5 A;  5AN4 A;  1QNE A;  2NOE A;  1LWW A;  1QN9 A;  4WZS D;  1FN7 A;  3OST A;  1TBA B;  2IV9 A;  4TPS A;  3H1Z A;  1PCZ A;  1QTS A;  1QN8 A;  1VTL E;  1M3Q A;  4DUL A;  2G30 A;  1YQM A;  4PY5 A;  2VJ0 A;  3SNS A;  1YTB A;  1QNA A;  1AIS A;  4EJZ A;  1KYU A;  1QNC A;  1NVP A;  3DPT A;  2JOI A;  2O3O A;  1KO9 A;  4Q11 A;  1TGH A;  2LAE A;  5IYD P;  2MJ7 A;  1QN7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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