1RVAA

Mg2+ binding to the active site of eco rv endonuclease: a crystallographic study of complexes with substrate and product dna at 2 angstroms resolution
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
244
structure length
244
Chain Sequence
SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIYRGRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3')
publication title Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution.
pubmed doi rcsb
source organism Escherichia coli
total genus 76
structure length 244
sequence length 244
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 1994-10-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09233 Endonuc-EcoRV Restriction endonuclease EcoRV
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.600.10 Alpha Beta 3-Layer(aba) Sandwich ECO RV Endonuclease; Chain A DNA mismatch repair MutH/Restriction endonuclease, type II 1rvaA00
1EO4A 3E3YA 1SX5A 4PXGA 2B0EA 1EO3A 2GIHA 5HLKA 1EV7A 2RVEA 3E44A 3E40A 2AOQA 1SX8A 5F8AA 3E43A 1STXA 1RVBA 1BSSA 1AZ4A 1AZ0A 1SUZA 3E45A 1XHUA 3EBCA 2GIJA 2GE5A 1BGBA 1RVEA 1BUAA 1AZOA 1B96A 1EOPA 1RVAA 1TX3A 1EONA 2GIIA 1IAWA 2AZOA 1B95A 1B94A 1KC6A 1XHVA 2GIGA 1RVCA 1RV5A 2AUDA 3E41A 1TW8A 2AORA 4RVEA 1AZ3A 1B97A 2B0DA 3E42A 1EOOA 1BSUA 2REUA 2GIEA
chains in the Genus database with same CATH superfamily
1EO4A 3E3YA 1SX5A 3NDHA 4PXGA 2B0EA 1EO3A 2GIHA 5HLKA 1EV7A 2RVEA 3E44A 3E40A 2EZVA 2AOQA 1SX8A 5F8AA 3E43A 1STXA 1RVBA 1BSSA 1AZ4A 1AZ0A 1SUZA 3E45A 1XHUA 3EBCA 2GIJA 2GE5A 1BGBA 1RVEA 1BUAA 1AZOA 1B96A 1EOPA 1RVAA 1TX3A 1EONA 2GIIA 1IAWA 2AZOA 1B95A 1B94A 1KC6A 1XHVA 2GIGA 1RVCA 1RV5A 2AUDA 3E41A 1TW8A 2AORA 4RVEA 1AZ3A 1B97A 2B0DA 3E42A 1EOOA 1BSUA 2F03A 2REUA 2GIEA 1DMUA
chains in the Genus database with same CATH topology
1EO4A 3E3YA 1SX5A 4PXGA 2B0EA 1EO3A 2GIHA 5HLKA 1EV7A 2RVEA 3E44A 3E40A 2AOQA 1SX8A 5F8AA 3E43A 1STXA 1RVBA 1BSSA 1AZ4A 1AZ0A 1SUZA 3E45A 1XHUA 3EBCA 2GIJA 2GE5A 1BGBA 1RVEA 1BUAA 1AZOA 1B96A 1EOPA 1RVAA 1TX3A 1EONA 2GIIA 1IAWA 2AZOA 1B95A 1B94A 1KC6A 1XHVA 2GIGA 1RVCA 1RV5A 2AUDA 3E41A 1TW8A 2AORA 4RVEA 1AZ3A 1B97A 2B0DA 3E42A 1EOOA 1BSUA 2REUA 2GIEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EO4 A;  3E3Y A;  1SX5 A;  4PXG A;  2B0E A;  1EO3 A;  2GIH A;  5HLK A;  1EV7 A;  2RVE A;  3E44 A;  3E40 A;  2AOQ A;  1SX8 A;  5F8A A;  3E43 A;  1STX A;  1RVB A;  1BSS A;  1AZ4 A;  1AZ0 A;  1SUZ A;  3E45 A;  1XHU A;  3EBC A;  2GIJ A;  2GE5 A;  1BGB A;  1RVE A;  1BUA A;  1AZO A;  1B96 A;  1EOP A;  1RVA A;  1TX3 A;  1EON A;  2GII A;  1IAW A;  2AZO A;  1B95 A;  1B94 A;  1KC6 A;  1XHV A;  2GIG A;  1RVC A;  1RV5 A;  2AUD A;  3E41 A;  1TW8 A;  2AOR A;  4RVE A;  1AZ3 A;  1B97 A;  2B0D A;  3E42 A;  1EOO A;  1BSU A;  2REU A;  2GIE A; 
#chains in the Genus database with same CATH topology
 1EO4 A;  3E3Y A;  1SX5 A;  3NDH A;  4PXG A;  2B0E A;  1EO3 A;  2GIH A;  5HLK A;  1EV7 A;  2RVE A;  3E44 A;  3E40 A;  2EZV A;  2AOQ A;  1SX8 A;  5F8A A;  3E43 A;  1STX A;  1RVB A;  1BSS A;  1AZ4 A;  1AZ0 A;  1SUZ A;  3E45 A;  1XHU A;  3EBC A;  2GIJ A;  2GE5 A;  1BGB A;  1RVE A;  1BUA A;  1AZO A;  1B96 A;  1EOP A;  1RVA A;  1TX3 A;  1EON A;  2GII A;  1IAW A;  2AZO A;  1B95 A;  1B94 A;  1KC6 A;  1XHV A;  2GIG A;  1RVC A;  1RV5 A;  2AUD A;  3E41 A;  1TW8 A;  2AOR A;  4RVE A;  1AZ3 A;  1B97 A;  2B0D A;  3E42 A;  1EOO A;  1BSU A;  2F03 A;  2REU A;  2GIE A;  1DMU A; 
#chains in the Genus database with same CATH homology
 1EO4 A;  3E3Y A;  1SX5 A;  4PXG A;  2B0E A;  1EO3 A;  2GIH A;  5HLK A;  1EV7 A;  2RVE A;  3E44 A;  3E40 A;  2AOQ A;  1SX8 A;  5F8A A;  3E43 A;  1STX A;  1RVB A;  1BSS A;  1AZ4 A;  1AZ0 A;  1SUZ A;  3E45 A;  1XHU A;  3EBC A;  2GIJ A;  2GE5 A;  1BGB A;  1RVE A;  1BUA A;  1AZO A;  1B96 A;  1EOP A;  1RVA A;  1TX3 A;  1EON A;  2GII A;  1IAW A;  2AZO A;  1B95 A;  1B94 A;  1KC6 A;  1XHV A;  2GIG A;  1RVC A;  1RV5 A;  2AUD A;  3E41 A;  1TW8 A;  2AOR A;  4RVE A;  1AZ3 A;  1B97 A;  2B0D A;  3E42 A;  1EOO A;  1BSU A;  2REU A;  2GIE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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