1SHQA

Crystal structure of shrimp alkaline phosphatase with magnesium in m3
Total Genus 187
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
Knots found
sequence length
476
structure length
476
Chain Sequence
EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFEREKISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIRNTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSVTHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTFCD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords alkaline phosphatase
publication title Ligand-binding and metal-exchange crystallographic studies on shrimp alkaline phosphatase.
pubmed doi rcsb
total genus 187
structure length 476
sequence length 476
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2004-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1shqA00
1URBA 1ZEDA 4LR8A 3NKNA 2W5WA 2D1GA 4CXUA 3SZYA 3BDFA 4MY4A 5LRMA 4N7TA 3OT9A 1HJKA 5LRNA 1E1ZP 1KH4A 4ZG9A 2GSUA 4UPKA 1SHQA 3M8YA 2IUCA 1HDHA 4UPHA 1KHJA 2W5RA 3WAXA 2W5TA 4UPLA 3BDHA 1EQJA 3UN2A 3NKPA 3BDGA 4LRBA 4QAXA 3E2DA 5DLTA 5AJ9A 3DYCA 4GTWA 3IGZB 4TN0A 3IDDA 4LR7A 1ANJA 1URAA 1ED9A 1AJDA 1KHLA 3A52A 4GTZA 4LR2A 3T01A 3TX0A 4UOOA 4MHXA 3UN3A 2W5XA 4NWJA 4ZG6A 3WAVA 4ZGAA 1P49A 5EGHA 1EW8A 1O99A 4LRAA 3NKQA 3T02A 2W5QA 1ALHA 1ANIA 1KHNA 3MK1A 3UO0A 4LQYA 3UNYA 1B8JA 3B5QA 2IUCB 3SZZA 2XR9A 4GTXA 1AUKA 1ELZA 4KM4A 3BDGB 4LR9A 3ED4A 4UPIA 4CYSA 4CXSA 5L0EA 2GLQA 3LXQA 5DLWA 3UN5A 4LRFA 4NWXA 4KJDA 1ALJA 2RH6A 2GSNA 1ALIA 1EI6A 1O98A 3NKOA 1HQAA 1KH9A 4MIVA 2QZUA 3T00A 5L0KA 1EW9A 3TG0A 5LIAA 4KJGA 4ZG7A 5C66A 5IJSA 4LRDA 4CXKA 1KHKA 3M8ZA 3NKMA 1E33P 4KAVA 5LQQA 2X98A 3Q3QA 1EJJA 5INHA 4CYRA 3TWZA 1ED8A 2W5SA 3MK0A 1N2LA 3M8WA 3NVLA 1ALKA 2GA3A 2W8SA 5TJ3A 1K7HA 2GSOA 1KH7A 2XRGA 5K4PA 3WBHA 3MK2A 1SHNA 1N2KA 2W8DA 3KD8A 4UORA 4LRCA 4LREA 5GRRA 4YR1A 1AJAA 3NKRA 2IFYA 3DPCA 5KXAA 4UOPA 4KAYA 1Y7AA 5IJQA 1E3CP 5GOVA 5HRTA 1ZEFA 5L0BA 4GTYA 1E2SP 1ELYA 2G9YA 5DLVA 2VQRA 1EW2A 4FDIA 2ANHA 1AJCA 1Y6VA 2W5VA 3WAWA 3WAYA 3CMRA 2ZKTA 1FSUA 5EGEA 1ZEBA 1ELXA 3IGYB 1KH5A 4FDJA 4B56A 1AJBA 3M7VA
chains in the Genus database with same CATH superfamily
1URBA 1ZEDA 4LR8A 3NKNA 2W5WA 2D1GA 4CXUA 3SZYA 3BDFA 4MY4A 5LRMA 4N7TA 3OT9A 1HJKA 5LRNA 1E1ZP 1KH4A 4ZG9A 2GSUA 4UPKA 1SHQA 3M8YA 2IUCA 1HDHA 4UPHA 1KHJA 2W5RA 3WAXA 2W5TA 4UPLA 3BDHA 1EQJA 3UN2A 3NKPA 3BDGA 4LRBA 4QAXA 3E2DA 5DLTA 5AJ9A 3DYCA 4GTWA 3IGZB 4TN0A 3IDDA 4LR7A 1ANJA 1URAA 1ED9A 1AJDA 1KHLA 3A52A 4GTZA 4LR2A 3T01A 3TX0A 4UOOA 4MHXA 3UN3A 2W5XA 4NWJA 4ZG6A 3WAVA 4ZGAA 1P49A 5EGHA 1EW8A 1O99A 4LRAA 3NKQA 3T02A 2W5QA 1ALHA 1ANIA 1KHNA 3MK1A 3UO0A 4LQYA 3UNYA 1B8JA 3B5QA 2IUCB 3SZZA 2XR9A 4GTXA 1AUKA 1ELZA 4KM4A 3BDGB 4LR9A 3ED4A 4UPIA 4CYSA 4CXSA 5L0EA 2GLQA 3LXQA 5DLWA 3UN5A 4LRFA 4NWXA 4KJDA 1ALJA 2RH6A 2GSNA 1ALIA 1EI6A 1O98A 3NKOA 1HQAA 1KH9A 4MIVA 2QZUA 3T00A 5L0KA 1EW9A 3TG0A 5LIAA 4KJGA 4ZG7A 5C66A 5IJSA 4LRDA 4CXKA 1KHKA 3M8ZA 3NKMA 1E33P 4KAVA 5LQQA 2X98A 3Q3QA 1EJJA 5INHA 4CYRA 3TWZA 1ED8A 2W5SA 3MK0A 1N2LA 3M8WA 3NVLA 1ALKA 2GA3A 2W8SA 5TJ3A 1K7HA 2GSOA 1KH7A 2XRGA 5K4PA 3WBHA 3MK2A 1SHNA 1N2KA 2W8DA 3KD8A 4UORA 4LRCA 4LREA 5GRRA 4YR1A 1AJAA 3NKRA 2IFYA 3DPCA 5KXAA 4UOPA 4KAYA 1Y7AA 5IJQA 1E3CP 5GOVA 5HRTA 1ZEFA 5L0BA 4GTYA 1E2SP 1ELYA 2G9YA 5DLVA 2VQRA 1EW2A 4FDIA 2ANHA 1AJCA 1Y6VA 2W5VA 3WAWA 3WAYA 3CMRA 2ZKTA 1FSUA 5EGEA 1ZEBA 1ELXA 3IGYB 1KH5A 4FDJA 4B56A 1AJBA 3M7VA
chains in the Genus database with same CATH topology
1URBA 1ZEDA 4LR8A 3NKNA 2W5WA 2D1GA 4CXUA 3SZYA 3BDFA 4MY4A 5LRMA 4N7TA 3OT9A 1HJKA 5LRNA 1E1ZP 1KH4A 4ZG9A 2GSUA 4UPKA 1SHQA 3M8YA 2IUCA 1HDHA 4UPHA 1KHJA 2W5RA 3WAXA 2W5TA 4UPLA 3BDHA 1EQJA 3UN2A 3NKPA 3BDGA 4LRBA 4QAXA 3E2DA 5DLTA 5AJ9A 3DYCA 4GTWA 3IGZB 4TN0A 3IDDA 4LR7A 1ANJA 1URAA 1ED9A 1AJDA 1KHLA 3A52A 4GTZA 4LR2A 3T01A 3TX0A 4UOOA 4MHXA 3UN3A 2W5XA 4NWJA 4ZG6A 3WAVA 4ZGAA 1P49A 5EGHA 1EW8A 1O99A 4LRAA 3NKQA 3T02A 2W5QA 1ALHA 1ANIA 1KHNA 3MK1A 3UO0A 4LQYA 3UNYA 1B8JA 3B5QA 2IUCB 3SZZA 2XR9A 4GTXA 1AUKA 1ELZA 4KM4A 3BDGB 4LR9A 3ED4A 4UPIA 4CYSA 4CXSA 5L0EA 2GLQA 3LXQA 5DLWA 3UN5A 4LRFA 4NWXA 4KJDA 1ALJA 2RH6A 2GSNA 1ALIA 1EI6A 1O98A 3NKOA 1HQAA 1KH9A 4MIVA 2QZUA 3T00A 5L0KA 1EW9A 3TG0A 5LIAA 4KJGA 4ZG7A 5C66A 5IJSA 4LRDA 4CXKA 1KHKA 3M8ZA 3NKMA 1E33P 4KAVA 5LQQA 2X98A 3Q3QA 1EJJA 5INHA 4CYRA 3TWZA 1ED8A 2W5SA 3MK0A 1N2LA 3M8WA 3NVLA 1ALKA 2GA3A 2W8SA 5TJ3A 1K7HA 2GSOA 1KH7A 2XRGA 5K4PA 3WBHA 3MK2A 1SHNA 1N2KA 2W8DA 3KD8A 4UORA 4LRCA 4LREA 5GRRA 4YR1A 1AJAA 3NKRA 2IFYA 3DPCA 5KXAA 4UOPA 4KAYA 1Y7AA 5IJQA 1E3CP 5GOVA 5HRTA 1ZEFA 5L0BA 4GTYA 1E2SP 1ELYA 2G9YA 5DLVA 2VQRA 1EW2A 4FDIA 2ANHA 1AJCA 1Y6VA 2W5VA 3WAWA 3WAYA 3CMRA 2ZKTA 1FSUA 5EGEA 1ZEBA 1ELXA 3IGYB 1KH5A 4FDJA 4B56A 1AJBA 3M7VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1URB A;  1ZED A;  4LR8 A;  3NKN A;  2W5W A;  2D1G A;  4CXU A;  3SZY A;  3BDF A;  4MY4 A;  5LRM A;  4N7T A;  3OT9 A;  1HJK A;  5LRN A;  1E1Z P;  1KH4 A;  4ZG9 A;  2GSU A;  4UPK A;  1SHQ A;  3M8Y A;  2IUC A;  1HDH A;  4UPH A;  1KHJ A;  2W5R A;  3WAX A;  2W5T A;  4UPL A;  3BDH A;  1EQJ A;  3UN2 A;  3NKP A;  3BDG A;  4LRB A;  4QAX A;  3E2D A;  5DLT A;  5AJ9 A;  3DYC A;  4GTW A;  3IGZ B;  4TN0 A;  3IDD A;  4LR7 A;  1ANJ A;  1URA A;  1ED9 A;  1AJD A;  1KHL A;  3A52 A;  4GTZ A;  4LR2 A;  3T01 A;  3TX0 A;  4UOO A;  4MHX A;  3UN3 A;  2W5X A;  4NWJ A;  4ZG6 A;  3WAV A;  4ZGA A;  1P49 A;  5EGH A;  1EW8 A;  1O99 A;  4LRA A;  3NKQ A;  3T02 A;  2W5Q A;  1ALH A;  1ANI A;  1KHN A;  3MK1 A;  3UO0 A;  4LQY A;  3UNY A;  1B8J A;  3B5Q A;  2IUC B;  3SZZ A;  2XR9 A;  4GTX A;  1AUK A;  1ELZ A;  4KM4 A;  3BDG B;  4LR9 A;  3ED4 A;  4UPI A;  4CYS A;  4CXS A;  5L0E A;  2GLQ A;  3LXQ A;  5DLW A;  3UN5 A;  4LRF A;  4NWX A;  4KJD A;  1ALJ A;  2RH6 A;  2GSN A;  1ALI A;  1EI6 A;  1O98 A;  3NKO A;  1HQA A;  1KH9 A;  4MIV A;  2QZU A;  3T00 A;  5L0K A;  1EW9 A;  3TG0 A;  5LIA A;  4KJG A;  4ZG7 A;  5C66 A;  5IJS A;  4LRD A;  4CXK A;  1KHK A;  3M8Z A;  3NKM A;  1E33 P;  4KAV A;  5LQQ A;  2X98 A;  3Q3Q A;  1EJJ A;  5INH A;  4CYR A;  3TWZ A;  1ED8 A;  2W5S A;  3MK0 A;  1N2L A;  3M8W A;  3NVL A;  1ALK A;  2GA3 A;  2W8S A;  5TJ3 A;  1K7H A;  2GSO A;  1KH7 A;  2XRG A;  5K4P A;  3WBH A;  3MK2 A;  1SHN A;  1N2K A;  2W8D A;  3KD8 A;  4UOR A;  4LRC A;  4LRE A;  5GRR A;  4YR1 A;  1AJA A;  3NKR A;  2IFY A;  3DPC A;  5KXA A;  4UOP A;  4KAY A;  1Y7A A;  5IJQ A;  1E3C P;  5GOV A;  5HRT A;  1ZEF A;  5L0B A;  4GTY A;  1E2S P;  1ELY A;  2G9Y A;  5DLV A;  2VQR A;  1EW2 A;  4FDI A;  2ANH A;  1AJC A;  1Y6V A;  2W5V A;  3WAW A;  3WAY A;  3CMR A;  2ZKT A;  1FSU A;  5EGE A;  1ZEB A;  1ELX A;  3IGY B;  1KH5 A;  4FDJ A;  4B56 A;  1AJB A;  3M7V A; 
#chains in the Genus database with same CATH topology
 1URB A;  1ZED A;  4LR8 A;  3NKN A;  2W5W A;  2D1G A;  4CXU A;  3SZY A;  3BDF A;  4MY4 A;  5LRM A;  4N7T A;  3OT9 A;  1HJK A;  5LRN A;  1E1Z P;  1KH4 A;  4ZG9 A;  2GSU A;  4UPK A;  1SHQ A;  3M8Y A;  2IUC A;  1HDH A;  4UPH A;  1KHJ A;  2W5R A;  3WAX A;  2W5T A;  4UPL A;  3BDH A;  1EQJ A;  3UN2 A;  3NKP A;  3BDG A;  4LRB A;  4QAX A;  3E2D A;  5DLT A;  5AJ9 A;  3DYC A;  4GTW A;  3IGZ B;  4TN0 A;  3IDD A;  4LR7 A;  1ANJ A;  1URA A;  1ED9 A;  1AJD A;  1KHL A;  3A52 A;  4GTZ A;  4LR2 A;  3T01 A;  3TX0 A;  4UOO A;  4MHX A;  3UN3 A;  2W5X A;  4NWJ A;  4ZG6 A;  3WAV A;  4ZGA A;  1P49 A;  5EGH A;  1EW8 A;  1O99 A;  4LRA A;  3NKQ A;  3T02 A;  2W5Q A;  1ALH A;  1ANI A;  1KHN A;  3MK1 A;  3UO0 A;  4LQY A;  3UNY A;  1B8J A;  3B5Q A;  2IUC B;  3SZZ A;  2XR9 A;  4GTX A;  1AUK A;  1ELZ A;  4KM4 A;  3BDG B;  4LR9 A;  3ED4 A;  4UPI A;  4CYS A;  4CXS A;  5L0E A;  2GLQ A;  3LXQ A;  5DLW A;  3UN5 A;  4LRF A;  4NWX A;  4KJD A;  1ALJ A;  2RH6 A;  2GSN A;  1ALI A;  1EI6 A;  1O98 A;  3NKO A;  1HQA A;  1KH9 A;  4MIV A;  2QZU A;  3T00 A;  5L0K A;  1EW9 A;  3TG0 A;  5LIA A;  4KJG A;  4ZG7 A;  5C66 A;  5IJS A;  4LRD A;  4CXK A;  1KHK A;  3M8Z A;  3NKM A;  1E33 P;  4KAV A;  5LQQ A;  2X98 A;  3Q3Q A;  1EJJ A;  5INH A;  4CYR A;  3TWZ A;  1ED8 A;  2W5S A;  3MK0 A;  1N2L A;  3M8W A;  3NVL A;  1ALK A;  2GA3 A;  2W8S A;  5TJ3 A;  1K7H A;  2GSO A;  1KH7 A;  2XRG A;  5K4P A;  3WBH A;  3MK2 A;  1SHN A;  1N2K A;  2W8D A;  3KD8 A;  4UOR A;  4LRC A;  4LRE A;  5GRR A;  4YR1 A;  1AJA A;  3NKR A;  2IFY A;  3DPC A;  5KXA A;  4UOP A;  4KAY A;  1Y7A A;  5IJQ A;  1E3C P;  5GOV A;  5HRT A;  1ZEF A;  5L0B A;  4GTY A;  1E2S P;  1ELY A;  2G9Y A;  5DLV A;  2VQR A;  1EW2 A;  4FDI A;  2ANH A;  1AJC A;  1Y6V A;  2W5V A;  3WAW A;  3WAY A;  3CMR A;  2ZKT A;  1FSU A;  5EGE A;  1ZEB A;  1ELX A;  3IGY B;  1KH5 A;  4FDJ A;  4B56 A;  1AJB A;  3M7V A; 
#chains in the Genus database with same CATH homology
 1URB A;  1ZED A;  4LR8 A;  3NKN A;  2W5W A;  2D1G A;  4CXU A;  3SZY A;  3BDF A;  4MY4 A;  5LRM A;  4N7T A;  3OT9 A;  1HJK A;  5LRN A;  1E1Z P;  1KH4 A;  4ZG9 A;  2GSU A;  4UPK A;  1SHQ A;  3M8Y A;  2IUC A;  1HDH A;  4UPH A;  1KHJ A;  2W5R A;  3WAX A;  2W5T A;  4UPL A;  3BDH A;  1EQJ A;  3UN2 A;  3NKP A;  3BDG A;  4LRB A;  4QAX A;  3E2D A;  5DLT A;  5AJ9 A;  3DYC A;  4GTW A;  3IGZ B;  4TN0 A;  3IDD A;  4LR7 A;  1ANJ A;  1URA A;  1ED9 A;  1AJD A;  1KHL A;  3A52 A;  4GTZ A;  4LR2 A;  3T01 A;  3TX0 A;  4UOO A;  4MHX A;  3UN3 A;  2W5X A;  4NWJ A;  4ZG6 A;  3WAV A;  4ZGA A;  1P49 A;  5EGH A;  1EW8 A;  1O99 A;  4LRA A;  3NKQ A;  3T02 A;  2W5Q A;  1ALH A;  1ANI A;  1KHN A;  3MK1 A;  3UO0 A;  4LQY A;  3UNY A;  1B8J A;  3B5Q A;  2IUC B;  3SZZ A;  2XR9 A;  4GTX A;  1AUK A;  1ELZ A;  4KM4 A;  3BDG B;  4LR9 A;  3ED4 A;  4UPI A;  4CYS A;  4CXS A;  5L0E A;  2GLQ A;  3LXQ A;  5DLW A;  3UN5 A;  4LRF A;  4NWX A;  4KJD A;  1ALJ A;  2RH6 A;  2GSN A;  1ALI A;  1EI6 A;  1O98 A;  3NKO A;  1HQA A;  1KH9 A;  4MIV A;  2QZU A;  3T00 A;  5L0K A;  1EW9 A;  3TG0 A;  5LIA A;  4KJG A;  4ZG7 A;  5C66 A;  5IJS A;  4LRD A;  4CXK A;  1KHK A;  3M8Z A;  3NKM A;  1E33 P;  4KAV A;  5LQQ A;  2X98 A;  3Q3Q A;  1EJJ A;  5INH A;  4CYR A;  3TWZ A;  1ED8 A;  2W5S A;  3MK0 A;  1N2L A;  3M8W A;  3NVL A;  1ALK A;  2GA3 A;  2W8S A;  5TJ3 A;  1K7H A;  2GSO A;  1KH7 A;  2XRG A;  5K4P A;  3WBH A;  3MK2 A;  1SHN A;  1N2K A;  2W8D A;  3KD8 A;  4UOR A;  4LRC A;  4LRE A;  5GRR A;  4YR1 A;  1AJA A;  3NKR A;  2IFY A;  3DPC A;  5KXA A;  4UOP A;  4KAY A;  1Y7A A;  5IJQ A;  1E3C P;  5GOV A;  5HRT A;  1ZEF A;  5L0B A;  4GTY A;  1E2S P;  1ELY A;  2G9Y A;  5DLV A;  2VQR A;  1EW2 A;  4FDI A;  2ANH A;  1AJC A;  1Y6V A;  2W5V A;  3WAW A;  3WAY A;  3CMR A;  2ZKT A;  1FSU A;  5EGE A;  1ZEB A;  1ELX A;  3IGY B;  1KH5 A;  4FDJ A;  4B56 A;  1AJB A;  3M7V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...