1UGYA

Crystal structure of jacalin- mellibiose (gal-alpha(1-6)-glc) complex
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHVSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
publication title Structural Basis of the Carbohydrate Specificities of Jacalin: An X-ray and Modeling Study
pubmed doi rcsb
total genus 30
structure length 133
sequence length 133
chains with identical sequence G
ec nomenclature
pdb deposition date 2003-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ugyA00
1J4UA 5J4TA 1PXDA 3LLYA 3LLZA 4AKCA 2HYRA 1VBOA 2NU5A 1VBPA 3LM1A 1TP8A 5AV7A 1XXRA 1UH1A 3R50A 1C3KA 4R6QA 4R6RA 1JOTA 3VZGA 2GTYA 3WOCA 1UGYA 1OUWA 3MIUA 4R6PA 2BN0A 4PIFA 3VY7A 5J4XA 4PITA 1C3NA 4AKDA 3AQGA 1XEZA 3LL0A 4MQ0A 3VZEA 2JZ4A 3VY6A 5J50A 3VZFA 4PIKA 1WS5A 2BMZA 3O44A 5EXGA 1J4TA 1UGYC 3MITA 1JACA 1J4SA 3MIVA 1UGXA 1KUJA 2GUXA 2GUDA 4R6OA 2HYQA 1WS5C 3R51A 3WOBA 2GUCA 4AKBA 1M26A 2BMYA 1WS4A 3LL2A 4R6NA 1UGWA 1XXQA 3APAA 3R52A 4PIUA 4GX7A 4AK4A 4WOGA 4DDNA 2GUEA 1KU8A 3LKYA 5BN6E 1X1VA 1TOQA 1ZGRA 1C3MA 2NUOA 3LL1A 5JM1A 5J51A 1WS4C 1UGWC 1ZGSA 1UH0A 3P8SA
chains in the Genus database with same CATH superfamily
1J4UA 5J4TA 1PXDA 3LLYA 3LLZA 4AKCA 4D8MA 2HYRA 1VBOA 2NU5A 1VBPA 3LM1A 1TP8A 5AV7A 3EB7A 1XXRA 1UH1A 3R50A 1W99A 1C3KA 4R6QA 4R6RA 1JOTA 3VZGA 2GTYA 3WOCA 1UGYA 1OUWA 3MIUA 4R6PA 2BN0A 4PIFA 3VY7A 5J4XA 4PITA 1C3NA 4ARXA 4AKDA 3AQGA 1XEZA 3LL0A 4MQ0A 3VZEA 4W8JA 2JZ4A 3VY6A 1I5PA 5J50A 3VZFA 4PIKA 1WS5A 2BMZA 2C9KA 4MOAA 3O44A 5EXGA 1J4TA 1UGYC 3MITA 1JACA 1J4SA 3MIVA 1UGXA 4ARYA 1KUJA 2GUXA 2GUDA 4R6OA 2HYQA 4QX0A 1WS5C 3R51A 3WOBA 2GUCA 4AKBA 1M26A 2BMYA 1WS4A 3LL2A 4R6NA 1UGWA 1XXQA 3APAA 2QP2A 3R52A 1CIYA 1DLCA 4PIUA 3TOWA 4GX7A 4AK4A 4WOGA 4DDNA 2GUEA 1KU8A 3LKYA 5BN6E 1X1VA 1TOQA 1ZGRA 4QX1A 1C3MA 1VMOA 2NUOA 3LL1A 5JM1A 4QX3A 5J51A 1WS4C 4QX2A 1UGWC 1JI6A 1ZGSA 1UH0A 3P8SA
chains in the Genus database with same CATH topology
1J4UA 5J4TA 1PXDA 3LLYA 3LLZA 4AKCA 2HYRA 1VBOA 2NU5A 1VBPA 3LM1A 1TP8A 5AV7A 1XXRA 1UH1A 3R50A 1C3KA 4R6QA 4R6RA 1JOTA 3VZGA 2GTYA 3WOCA 1UGYA 1OUWA 3MIUA 4R6PA 2BN0A 4PIFA 3VY7A 5J4XA 4PITA 1C3NA 4AKDA 3AQGA 1XEZA 3LL0A 4MQ0A 3VZEA 2JZ4A 3VY6A 5J50A 3VZFA 4PIKA 1WS5A 2BMZA 3O44A 5EXGA 1J4TA 1UGYC 3MITA 1JACA 1J4SA 3MIVA 1UGXA 1KUJA 2GUXA 2GUDA 4R6OA 2HYQA 1WS5C 3R51A 3WOBA 2GUCA 4AKBA 1M26A 2BMYA 1WS4A 3LL2A 4R6NA 1UGWA 1XXQA 3APAA 3R52A 4PIUA 4GX7A 4AK4A 4WOGA 4DDNA 2GUEA 1KU8A 3LKYA 5BN6E 1X1VA 1TOQA 1ZGRA 1C3MA 2NUOA 3LL1A 5JM1A 5J51A 1WS4C 1UGWC 1ZGSA 1UH0A 3P8SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J4U A;  5J4T A;  1PXD A;  3LLY A;  3LLZ A;  4AKC A;  2HYR A;  1VBO A;  2NU5 A;  1VBP A;  3LM1 A;  1TP8 A;  5AV7 A;  1XXR A;  1UH1 A;  3R50 A;  1C3K A;  4R6Q A;  4R6R A;  1JOT A;  3VZG A;  2GTY A;  3WOC A;  1UGY A;  1OUW A;  3MIU A;  4R6P A;  2BN0 A;  4PIF A;  3VY7 A;  5J4X A;  4PIT A;  1C3N A;  4AKD A;  3AQG A;  1XEZ A;  3LL0 A;  4MQ0 A;  3VZE A;  2JZ4 A;  3VY6 A;  5J50 A;  3VZF A;  4PIK A;  1WS5 A;  2BMZ A;  3O44 A;  5EXG A;  1J4T A;  1UGY C;  3MIT A;  1JAC A;  1J4S A;  3MIV A;  1UGX A;  1KUJ A;  2GUX A;  2GUD A;  4R6O A;  2HYQ A;  1WS5 C;  3R51 A;  3WOB A;  2GUC A;  4AKB A;  1M26 A;  2BMY A;  1WS4 A;  3LL2 A;  4R6N A;  1UGW A;  1XXQ A;  3APA A;  3R52 A;  4PIU A;  4GX7 A;  4AK4 A;  4WOG A;  4DDN A;  2GUE A;  1KU8 A;  3LKY A;  5BN6 E;  1X1V A;  1TOQ A;  1ZGR A;  1C3M A;  2NUO A;  3LL1 A;  5JM1 A;  5J51 A;  1WS4 C;  1UGW C;  1ZGS A;  1UH0 A;  3P8S A; 
#chains in the Genus database with same CATH topology
 1J4U A;  5J4T A;  1PXD A;  3LLY A;  3LLZ A;  4AKC A;  4D8M A;  2HYR A;  1VBO A;  2NU5 A;  1VBP A;  3LM1 A;  1TP8 A;  5AV7 A;  3EB7 A;  1XXR A;  1UH1 A;  3R50 A;  1W99 A;  1C3K A;  4R6Q A;  4R6R A;  1JOT A;  3VZG A;  2GTY A;  3WOC A;  1UGY A;  1OUW A;  3MIU A;  4R6P A;  2BN0 A;  4PIF A;  3VY7 A;  5J4X A;  4PIT A;  1C3N A;  4ARX A;  4AKD A;  3AQG A;  1XEZ A;  3LL0 A;  4MQ0 A;  3VZE A;  4W8J A;  2JZ4 A;  3VY6 A;  1I5P A;  5J50 A;  3VZF A;  4PIK A;  1WS5 A;  2BMZ A;  2C9K A;  4MOA A;  3O44 A;  5EXG A;  1J4T A;  1UGY C;  3MIT A;  1JAC A;  1J4S A;  3MIV A;  1UGX A;  4ARY A;  1KUJ A;  2GUX A;  2GUD A;  4R6O A;  2HYQ A;  4QX0 A;  1WS5 C;  3R51 A;  3WOB A;  2GUC A;  4AKB A;  1M26 A;  2BMY A;  1WS4 A;  3LL2 A;  4R6N A;  1UGW A;  1XXQ A;  3APA A;  2QP2 A;  3R52 A;  1CIY A;  1DLC A;  4PIU A;  3TOW A;  4GX7 A;  4AK4 A;  4WOG A;  4DDN A;  2GUE A;  1KU8 A;  3LKY A;  5BN6 E;  1X1V A;  1TOQ A;  1ZGR A;  4QX1 A;  1C3M A;  1VMO A;  2NUO A;  3LL1 A;  5JM1 A;  4QX3 A;  5J51 A;  1WS4 C;  4QX2 A;  1UGW C;  1JI6 A;  1ZGS A;  1UH0 A;  3P8S A; 
#chains in the Genus database with same CATH homology
 1J4U A;  5J4T A;  1PXD A;  3LLY A;  3LLZ A;  4AKC A;  2HYR A;  1VBO A;  2NU5 A;  1VBP A;  3LM1 A;  1TP8 A;  5AV7 A;  1XXR A;  1UH1 A;  3R50 A;  1C3K A;  4R6Q A;  4R6R A;  1JOT A;  3VZG A;  2GTY A;  3WOC A;  1UGY A;  1OUW A;  3MIU A;  4R6P A;  2BN0 A;  4PIF A;  3VY7 A;  5J4X A;  4PIT A;  1C3N A;  4AKD A;  3AQG A;  1XEZ A;  3LL0 A;  4MQ0 A;  3VZE A;  2JZ4 A;  3VY6 A;  5J50 A;  3VZF A;  4PIK A;  1WS5 A;  2BMZ A;  3O44 A;  5EXG A;  1J4T A;  1UGY C;  3MIT A;  1JAC A;  1J4S A;  3MIV A;  1UGX A;  1KUJ A;  2GUX A;  2GUD A;  4R6O A;  2HYQ A;  1WS5 C;  3R51 A;  3WOB A;  2GUC A;  4AKB A;  1M26 A;  2BMY A;  1WS4 A;  3LL2 A;  4R6N A;  1UGW A;  1XXQ A;  3APA A;  3R52 A;  4PIU A;  4GX7 A;  4AK4 A;  4WOG A;  4DDN A;  2GUE A;  1KU8 A;  3LKY A;  5BN6 E;  1X1V A;  1TOQ A;  1ZGR A;  1C3M A;  2NUO A;  3LL1 A;  5JM1 A;  5J51 A;  1WS4 C;  1UGW C;  1ZGS A;  1UH0 A;  3P8S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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