1URBA

Alkaline phosphatase (n51mg)
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
446
structure length
446
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGNGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Alkaline phosphatase
molecule keywords ALKALINE PHOSPHATASE
publication title Kinetic and structural consequences of replacing the aspartate bridge by asparagine in the catalytic metal triad of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
source organism Escherichia coli
total genus 163
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1996-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1urbA00
4KAVA 3WAVA 2XRGA 1SHNA 2ZKTA 4UOOA 1ANIA 1AJDA 1O99A 3BDFA 2XR9A 3NKNA 3IGZB 2GLQA 1ZEDA 5LIAA 1N2KA 2W5WA 1ALHA 5DLVA 4CYSA 5IJSA 3DYCA 3ED4A 4CXUA 3E2DA 2IFYA 3LXQA 5GRRA 3IGYB 1P49A 2D1GA 3M8ZA 5INHA 3DPCA 2W5TA 3BDGA 3BDGB 3NKQA 5IJQA 5L0BA 4GTWA 1N2LA 4ZGAA 3T01A 2GA3A 4FDIA 3TG0A 1KH7A 1AJBA 3Q3QA 5LRNA 1ELZA 4KAYA 3M8YA 4ZG7A 5LQQA 1SHQA 1EW9A 3NVLA 2W5VA 1HQAA 1ZEBA 3MK0A 2ANHA 5TJ3A 3UN3A 1E1ZP 3UNYA 4ZG9A 1HDHA 3NKPA 1Y6VA 3T02A 3A52A 4NWJA 3IDDA 5KXAA 2W5QA 3MK2A 4MIVA 4CXSA 1KHLA 1E2SP 1ELXA 2W8SA 4GTZA 3WAYA 4CYRA 2W5XA 1ZEFA 1KH5A 1AUKA 3SZYA 4LRBA 1KHNA 1AJAA 1ED9A 4KJGA 4MY4A 1ALJA 3BDHA 3TX0A 3WAWA 4N7TA 2W5SA 4TN0A 4ZG6A 2X98A 3SZZA 4B56A 5GOVA 1KHKA 1ELYA 4LRDA 1AJCA 2VQRA 4UPLA 4UPHA 1B8JA 4LRAA 3NKMA 1EQJA 2GSOA 3MK1A 4UORA 3UN5A 5HRTA 4KM4A 2IUCA 1K7HA 2IUCB 4UOPA 3UO0A 2W8DA 5L0KA 3WBHA 1EW8A 1ANJA 2G9YA 1O98A 3NKRA 1URBA 1FSUA 1EJJA 1HJKA 4LREA 4UPKA 5AJ9A 5C66A 1URAA 3B5QA 3OT9A 4LQYA 5EGEA 4NWXA 5EGHA 3CMRA 1E3CP 1ALKA 1EI6A 4GTYA 4LR7A 3KD8A 4UPIA 1ALIA 1Y7AA 2QZUA 3M8WA 3TWZA 5LRMA 2W5RA 1EW2A 5DLTA 1KH4A 5L0EA 3M7VA 4LR2A 5K4PA 4LR9A 4YR1A 2GSNA 3WAXA 4FDJA 1ED8A 2RH6A 4LRFA 4LR8A 3T00A 4QAXA 4KJDA 1KHJA 4LRCA 1KH9A 3NKOA 1E33P 5DLWA 4MHXA 4CXKA 4GTXA 2GSUA 3UN2A
chains in the Genus database with same CATH superfamily
4KAVA 3WAVA 2XRGA 1SHNA 2ZKTA 4UOOA 1ANIA 1AJDA 1O99A 3BDFA 2XR9A 3NKNA 3IGZB 2GLQA 1ZEDA 5LIAA 1N2KA 2W5WA 1ALHA 5DLVA 4CYSA 5IJSA 3DYCA 3ED4A 4CXUA 3E2DA 2IFYA 3LXQA 5GRRA 3IGYB 1P49A 2D1GA 3M8ZA 5INHA 3DPCA 2W5TA 3BDGA 3BDGB 3NKQA 5IJQA 5L0BA 4GTWA 1N2LA 4ZGAA 3T01A 2GA3A 4FDIA 3TG0A 1KH7A 1AJBA 3Q3QA 5LRNA 1ELZA 4KAYA 3M8YA 4ZG7A 5LQQA 1SHQA 1EW9A 3NVLA 2W5VA 1HQAA 1ZEBA 3MK0A 2ANHA 5TJ3A 3UN3A 1E1ZP 3UNYA 4ZG9A 1HDHA 3NKPA 1Y6VA 3T02A 3A52A 4NWJA 3IDDA 5KXAA 2W5QA 3MK2A 4MIVA 4CXSA 1KHLA 1E2SP 1ELXA 2W8SA 4GTZA 3WAYA 4CYRA 2W5XA 1ZEFA 1KH5A 1AUKA 3SZYA 4LRBA 1KHNA 1AJAA 1ED9A 4KJGA 4MY4A 1ALJA 3BDHA 3TX0A 3WAWA 4N7TA 2W5SA 4TN0A 4ZG6A 2X98A 3SZZA 4B56A 5GOVA 1KHKA 1ELYA 4LRDA 1AJCA 2VQRA 4UPLA 4UPHA 1B8JA 4LRAA 3NKMA 1EQJA 2GSOA 3MK1A 4UORA 3UN5A 5HRTA 4KM4A 2IUCA 1K7HA 2IUCB 4UOPA 3UO0A 2W8DA 5L0KA 3WBHA 1EW8A 1ANJA 2G9YA 1O98A 3NKRA 1URBA 1FSUA 1EJJA 1HJKA 4LREA 4UPKA 5AJ9A 5C66A 1URAA 3B5QA 3OT9A 4LQYA 5EGEA 4NWXA 5EGHA 3CMRA 1E3CP 1ALKA 1EI6A 4GTYA 4LR7A 3KD8A 4UPIA 1ALIA 1Y7AA 2QZUA 3M8WA 3TWZA 5LRMA 2W5RA 1EW2A 5DLTA 1KH4A 5L0EA 3M7VA 4LR2A 5K4PA 4LR9A 4YR1A 2GSNA 3WAXA 4FDJA 1ED8A 2RH6A 4LRFA 4LR8A 3T00A 4QAXA 4KJDA 1KHJA 4LRCA 1KH9A 3NKOA 1E33P 5DLWA 4MHXA 4CXKA 4GTXA 2GSUA 3UN2A
chains in the Genus database with same CATH topology
4KAVA 3WAVA 2XRGA 1SHNA 2ZKTA 4UOOA 1ANIA 1AJDA 1O99A 3BDFA 2XR9A 3NKNA 3IGZB 2GLQA 1ZEDA 5LIAA 1N2KA 2W5WA 1ALHA 5DLVA 4CYSA 5IJSA 3DYCA 3ED4A 4CXUA 3E2DA 2IFYA 3LXQA 5GRRA 3IGYB 1P49A 2D1GA 3M8ZA 5INHA 3DPCA 2W5TA 3BDGA 3BDGB 3NKQA 5IJQA 5L0BA 4GTWA 1N2LA 4ZGAA 3T01A 2GA3A 4FDIA 3TG0A 1KH7A 1AJBA 3Q3QA 5LRNA 1ELZA 4KAYA 3M8YA 4ZG7A 5LQQA 1SHQA 1EW9A 3NVLA 2W5VA 1HQAA 1ZEBA 3MK0A 2ANHA 5TJ3A 3UN3A 1E1ZP 3UNYA 4ZG9A 1HDHA 3NKPA 1Y6VA 3T02A 3A52A 4NWJA 3IDDA 5KXAA 2W5QA 3MK2A 4MIVA 4CXSA 1KHLA 1E2SP 1ELXA 2W8SA 4GTZA 3WAYA 4CYRA 2W5XA 1ZEFA 1KH5A 1AUKA 3SZYA 4LRBA 1KHNA 1AJAA 1ED9A 4KJGA 4MY4A 1ALJA 3BDHA 3TX0A 3WAWA 4N7TA 2W5SA 4TN0A 4ZG6A 2X98A 3SZZA 4B56A 5GOVA 1KHKA 1ELYA 4LRDA 1AJCA 2VQRA 4UPLA 4UPHA 1B8JA 4LRAA 3NKMA 1EQJA 2GSOA 3MK1A 4UORA 3UN5A 5HRTA 4KM4A 2IUCA 1K7HA 2IUCB 4UOPA 3UO0A 2W8DA 5L0KA 3WBHA 1EW8A 1ANJA 2G9YA 1O98A 3NKRA 1URBA 1FSUA 1EJJA 1HJKA 4LREA 4UPKA 5AJ9A 5C66A 1URAA 3B5QA 3OT9A 4LQYA 5EGEA 4NWXA 5EGHA 3CMRA 1E3CP 1ALKA 1EI6A 4GTYA 4LR7A 3KD8A 4UPIA 1ALIA 1Y7AA 2QZUA 3M8WA 3TWZA 5LRMA 2W5RA 1EW2A 5DLTA 1KH4A 5L0EA 3M7VA 4LR2A 5K4PA 4LR9A 4YR1A 2GSNA 3WAXA 4FDJA 1ED8A 2RH6A 4LRFA 4LR8A 3T00A 4QAXA 4KJDA 1KHJA 4LRCA 1KH9A 3NKOA 1E33P 5DLWA 4MHXA 4CXKA 4GTXA 2GSUA 3UN2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KAV A;  3WAV A;  2XRG A;  1SHN A;  2ZKT A;  4UOO A;  1ANI A;  1AJD A;  1O99 A;  3BDF A;  2XR9 A;  3NKN A;  3IGZ B;  2GLQ A;  1ZED A;  5LIA A;  1N2K A;  2W5W A;  1ALH A;  5DLV A;  4CYS A;  5IJS A;  3DYC A;  3ED4 A;  4CXU A;  3E2D A;  2IFY A;  3LXQ A;  5GRR A;  3IGY B;  1P49 A;  2D1G A;  3M8Z A;  5INH A;  3DPC A;  2W5T A;  3BDG A;  3BDG B;  3NKQ A;  5IJQ A;  5L0B A;  4GTW A;  1N2L A;  4ZGA A;  3T01 A;  2GA3 A;  4FDI A;  3TG0 A;  1KH7 A;  1AJB A;  3Q3Q A;  5LRN A;  1ELZ A;  4KAY A;  3M8Y A;  4ZG7 A;  5LQQ A;  1SHQ A;  1EW9 A;  3NVL A;  2W5V A;  1HQA A;  1ZEB A;  3MK0 A;  2ANH A;  5TJ3 A;  3UN3 A;  1E1Z P;  3UNY A;  4ZG9 A;  1HDH A;  3NKP A;  1Y6V A;  3T02 A;  3A52 A;  4NWJ A;  3IDD A;  5KXA A;  2W5Q A;  3MK2 A;  4MIV A;  4CXS A;  1KHL A;  1E2S P;  1ELX A;  2W8S A;  4GTZ A;  3WAY A;  4CYR A;  2W5X A;  1ZEF A;  1KH5 A;  1AUK A;  3SZY A;  4LRB A;  1KHN A;  1AJA A;  1ED9 A;  4KJG A;  4MY4 A;  1ALJ A;  3BDH A;  3TX0 A;  3WAW A;  4N7T A;  2W5S A;  4TN0 A;  4ZG6 A;  2X98 A;  3SZZ A;  4B56 A;  5GOV A;  1KHK A;  1ELY A;  4LRD A;  1AJC A;  2VQR A;  4UPL A;  4UPH A;  1B8J A;  4LRA A;  3NKM A;  1EQJ A;  2GSO A;  3MK1 A;  4UOR A;  3UN5 A;  5HRT A;  4KM4 A;  2IUC A;  1K7H A;  2IUC B;  4UOP A;  3UO0 A;  2W8D A;  5L0K A;  3WBH A;  1EW8 A;  1ANJ A;  2G9Y A;  1O98 A;  3NKR A;  1URB A;  1FSU A;  1EJJ A;  1HJK A;  4LRE A;  4UPK A;  5AJ9 A;  5C66 A;  1URA A;  3B5Q A;  3OT9 A;  4LQY A;  5EGE A;  4NWX A;  5EGH A;  3CMR A;  1E3C P;  1ALK A;  1EI6 A;  4GTY A;  4LR7 A;  3KD8 A;  4UPI A;  1ALI A;  1Y7A A;  2QZU A;  3M8W A;  3TWZ A;  5LRM A;  2W5R A;  1EW2 A;  5DLT A;  1KH4 A;  5L0E A;  3M7V A;  4LR2 A;  5K4P A;  4LR9 A;  4YR1 A;  2GSN A;  3WAX A;  4FDJ A;  1ED8 A;  2RH6 A;  4LRF A;  4LR8 A;  3T00 A;  4QAX A;  4KJD A;  1KHJ A;  4LRC A;  1KH9 A;  3NKO A;  1E33 P;  5DLW A;  4MHX A;  4CXK A;  4GTX A;  2GSU A;  3UN2 A; 
#chains in the Genus database with same CATH topology
 4KAV A;  3WAV A;  2XRG A;  1SHN A;  2ZKT A;  4UOO A;  1ANI A;  1AJD A;  1O99 A;  3BDF A;  2XR9 A;  3NKN A;  3IGZ B;  2GLQ A;  1ZED A;  5LIA A;  1N2K A;  2W5W A;  1ALH A;  5DLV A;  4CYS A;  5IJS A;  3DYC A;  3ED4 A;  4CXU A;  3E2D A;  2IFY A;  3LXQ A;  5GRR A;  3IGY B;  1P49 A;  2D1G A;  3M8Z A;  5INH A;  3DPC A;  2W5T A;  3BDG A;  3BDG B;  3NKQ A;  5IJQ A;  5L0B A;  4GTW A;  1N2L A;  4ZGA A;  3T01 A;  2GA3 A;  4FDI A;  3TG0 A;  1KH7 A;  1AJB A;  3Q3Q A;  5LRN A;  1ELZ A;  4KAY A;  3M8Y A;  4ZG7 A;  5LQQ A;  1SHQ A;  1EW9 A;  3NVL A;  2W5V A;  1HQA A;  1ZEB A;  3MK0 A;  2ANH A;  5TJ3 A;  3UN3 A;  1E1Z P;  3UNY A;  4ZG9 A;  1HDH A;  3NKP A;  1Y6V A;  3T02 A;  3A52 A;  4NWJ A;  3IDD A;  5KXA A;  2W5Q A;  3MK2 A;  4MIV A;  4CXS A;  1KHL A;  1E2S P;  1ELX A;  2W8S A;  4GTZ A;  3WAY A;  4CYR A;  2W5X A;  1ZEF A;  1KH5 A;  1AUK A;  3SZY A;  4LRB A;  1KHN A;  1AJA A;  1ED9 A;  4KJG A;  4MY4 A;  1ALJ A;  3BDH A;  3TX0 A;  3WAW A;  4N7T A;  2W5S A;  4TN0 A;  4ZG6 A;  2X98 A;  3SZZ A;  4B56 A;  5GOV A;  1KHK A;  1ELY A;  4LRD A;  1AJC A;  2VQR A;  4UPL A;  4UPH A;  1B8J A;  4LRA A;  3NKM A;  1EQJ A;  2GSO A;  3MK1 A;  4UOR A;  3UN5 A;  5HRT A;  4KM4 A;  2IUC A;  1K7H A;  2IUC B;  4UOP A;  3UO0 A;  2W8D A;  5L0K A;  3WBH A;  1EW8 A;  1ANJ A;  2G9Y A;  1O98 A;  3NKR A;  1URB A;  1FSU A;  1EJJ A;  1HJK A;  4LRE A;  4UPK A;  5AJ9 A;  5C66 A;  1URA A;  3B5Q A;  3OT9 A;  4LQY A;  5EGE A;  4NWX A;  5EGH A;  3CMR A;  1E3C P;  1ALK A;  1EI6 A;  4GTY A;  4LR7 A;  3KD8 A;  4UPI A;  1ALI A;  1Y7A A;  2QZU A;  3M8W A;  3TWZ A;  5LRM A;  2W5R A;  1EW2 A;  5DLT A;  1KH4 A;  5L0E A;  3M7V A;  4LR2 A;  5K4P A;  4LR9 A;  4YR1 A;  2GSN A;  3WAX A;  4FDJ A;  1ED8 A;  2RH6 A;  4LRF A;  4LR8 A;  3T00 A;  4QAX A;  4KJD A;  1KHJ A;  4LRC A;  1KH9 A;  3NKO A;  1E33 P;  5DLW A;  4MHX A;  4CXK A;  4GTX A;  2GSU A;  3UN2 A; 
#chains in the Genus database with same CATH homology
 4KAV A;  3WAV A;  2XRG A;  1SHN A;  2ZKT A;  4UOO A;  1ANI A;  1AJD A;  1O99 A;  3BDF A;  2XR9 A;  3NKN A;  3IGZ B;  2GLQ A;  1ZED A;  5LIA A;  1N2K A;  2W5W A;  1ALH A;  5DLV A;  4CYS A;  5IJS A;  3DYC A;  3ED4 A;  4CXU A;  3E2D A;  2IFY A;  3LXQ A;  5GRR A;  3IGY B;  1P49 A;  2D1G A;  3M8Z A;  5INH A;  3DPC A;  2W5T A;  3BDG A;  3BDG B;  3NKQ A;  5IJQ A;  5L0B A;  4GTW A;  1N2L A;  4ZGA A;  3T01 A;  2GA3 A;  4FDI A;  3TG0 A;  1KH7 A;  1AJB A;  3Q3Q A;  5LRN A;  1ELZ A;  4KAY A;  3M8Y A;  4ZG7 A;  5LQQ A;  1SHQ A;  1EW9 A;  3NVL A;  2W5V A;  1HQA A;  1ZEB A;  3MK0 A;  2ANH A;  5TJ3 A;  3UN3 A;  1E1Z P;  3UNY A;  4ZG9 A;  1HDH A;  3NKP A;  1Y6V A;  3T02 A;  3A52 A;  4NWJ A;  3IDD A;  5KXA A;  2W5Q A;  3MK2 A;  4MIV A;  4CXS A;  1KHL A;  1E2S P;  1ELX A;  2W8S A;  4GTZ A;  3WAY A;  4CYR A;  2W5X A;  1ZEF A;  1KH5 A;  1AUK A;  3SZY A;  4LRB A;  1KHN A;  1AJA A;  1ED9 A;  4KJG A;  4MY4 A;  1ALJ A;  3BDH A;  3TX0 A;  3WAW A;  4N7T A;  2W5S A;  4TN0 A;  4ZG6 A;  2X98 A;  3SZZ A;  4B56 A;  5GOV A;  1KHK A;  1ELY A;  4LRD A;  1AJC A;  2VQR A;  4UPL A;  4UPH A;  1B8J A;  4LRA A;  3NKM A;  1EQJ A;  2GSO A;  3MK1 A;  4UOR A;  3UN5 A;  5HRT A;  4KM4 A;  2IUC A;  1K7H A;  2IUC B;  4UOP A;  3UO0 A;  2W8D A;  5L0K A;  3WBH A;  1EW8 A;  1ANJ A;  2G9Y A;  1O98 A;  3NKR A;  1URB A;  1FSU A;  1EJJ A;  1HJK A;  4LRE A;  4UPK A;  5AJ9 A;  5C66 A;  1URA A;  3B5Q A;  3OT9 A;  4LQY A;  5EGE A;  4NWX A;  5EGH A;  3CMR A;  1E3C P;  1ALK A;  1EI6 A;  4GTY A;  4LR7 A;  3KD8 A;  4UPI A;  1ALI A;  1Y7A A;  2QZU A;  3M8W A;  3TWZ A;  5LRM A;  2W5R A;  1EW2 A;  5DLT A;  1KH4 A;  5L0E A;  3M7V A;  4LR2 A;  5K4P A;  4LR9 A;  4YR1 A;  2GSN A;  3WAX A;  4FDJ A;  1ED8 A;  2RH6 A;  4LRF A;  4LR8 A;  3T00 A;  4QAX A;  4KJD A;  1KHJ A;  4LRC A;  1KH9 A;  3NKO A;  1E33 P;  5DLW A;  4MHX A;  4CXK A;  4GTX A;  2GSU A;  3UN2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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