1VQ0A

Crystal structure of 33 kda chaperonin (heat shock protein 33 homolog) (hsp33) (tm1394) from thermotoga maritima at 2.20 a resolution
Total Genus 90
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
290
structure length
290
Chain Sequence
HHHMIYYGTMFDHKVRFSIVRMREVVEEARNRHALSYLATVVLGRALIGAALVTPWLAEKERWTLDIEGNGPIRRVVAQSTSEFTVRGYVANPKVELPLNEKGKFDVAGAIGQGVLRVVRDLGLKTPFVSQVPLVSGEIAEDLAYYFAVSEQIPSAFSIGVLVDSDGVKIAGGFAVQIIDRTLEQEKVEMIEKNIKNLPSISKLFQEAEPLDVLERIFGEKVGFVETAEIKYKCDCNREKAKNALLVLDKKELEDMRKEGKGEVVCKWCNTRYVFSEEELEELLKFKVDD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Chaperone
molecule keywords 33 kDa chaperonin
publication title Crystal structure of Hsp33 chaperone (TM1394) from Thermotoga maritima at 2.20 A resolution.
pubmed doi rcsb
source organism Thermotoga maritima
total genus 90
structure length 290
sequence length 290
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01430 HSP33 Hsp33 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.55.30.10 Alpha Beta 3-Layer(bab) Sandwich Hsp33 domain Hsp33 domain 1vq0A01
3.90.1280.10 Alpha Beta Alpha-Beta Complex CBS domain Like HSP33 redox switch-like 1vq0A02
1XJHA 1VQ0A 1HW7A 1I7FA 1VZYA 3M7MX
chains in the Genus database with same CATH superfamily
3JTFA 1VR9A 1XJHA 3NQRA 3OI8A 1VQ0A 2J9LA 3LFRA 2JA3A 1HW7A 1I7FA 1VZYA 3M7MX 3GHDA
chains in the Genus database with same CATH topology
1XJHA 1VQ0A 1HW7A 1I7FA 1VZYA 3M7MX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XJH A;  1VQ0 A;  1HW7 A;  1I7F A;  1VZY A;  3M7M X; 
#chains in the Genus database with same CATH topology
 3JTF A;  1VR9 A;  1XJH A;  3NQR A;  3OI8 A;  1VQ0 A;  2J9L A;  3LFR A;  2JA3 A;  1HW7 A;  1I7F A;  1VZY A;  3M7M X;  3GHD A; 
#chains in the Genus database with same CATH homology
 1XJH A;  1VQ0 A;  1HW7 A;  1I7F A;  1VZY A;  3M7M X; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...