1WOIA

Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
303
structure length
303
Chain Sequence
GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords agmatinase
publication title Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
pubmed doi rcsb
source organism Deinococcus radiodurans
total genus 114
structure length 303
sequence length 303
chains with identical sequence B, C, D, E, F
other databases KnotProt 2.0: S +31 +31 +31
ec nomenclature ec 3.5.3.11: Agmatinase.
pdb deposition date 2004-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1woiA00
4MYFA 4ITYA 1XFKA 3DJ8A 3NIQA 4Q3TA 3LP4A 4MYNA 4Q40A 5HJAA 2CEVA 1TBHA 3RLAA 4IE1A 4FCIA 4RHLA 1HQ5A 4DZ4A 3CEVA 4GSMA 1GQ7A 4MXRA 1WOHA 4GWCA 1WVBA 3MFVA 1ZPEA 4Q3RC 4Q3RA 2A0MA 4I06A 2RLAA 4RHJA 2PHOA 1HQFA 1T5FA 1T5GA 3MFWA 1R1OA 5RLAA 1P8MA 4HWWA 4MYLA 1TBJA 4Q41A 1P8QA 4RHKA 3THHA 4GWDA 1P8NA 4IU5A 3PZLA 3M1RA 1HQXA 1CEVA 3LHLA 1HQGA 1ZPGA 1P8RA 4CEVA 1T4SA 4HXQA 1P8PA 4RLAA 3F80A 4Q3UA 4HZEA 4IU0A 4IU1A 4GSZA 3NIOA 1WOIA 4IXUA 1HQHA 3GMZA 5CEVA 3MJLA 1D3VA 2PLLA 4IU4A 1TA1A 4Q3SA 2PHAA 1GQ6A 4RHMA 3LP7A 4Q42A 4IE2A 3E8QA 3SKKA 3E6KA 1T4RA 1T4TA 3E8ZA 1WVAA 4Q3VA 3SJTA 1PQ3A 2ZAVA 1T4PA 3NIPA 2EF4A 2EF5A 4MYKA 1RLAA 4RHQA 4RHIA 3E6VA 3SL0A 4IXVA 3GN0A 3MMRA 3E9BA 4G3HA 4GSVA 2AEBA 4IE3A 4Q3QA 5HJ9A 1P8OA 3SL1A 3TH7A 3KV2A 1P8SA 3THJA 4FCKA 1TBLA 3THEA 1WOGA 3TF3A 4Q3PA 2EIVA
chains in the Genus database with same CATH superfamily
4CBTA 4MYFA 5G0GA 3Q9BA 4ITYA 4BKXB 1XFKA 3DJ8A 3NIQA 5G1BA 2VQVA 4Q3TA 3LP4A 4MYNA 4Q40A 5HJAA 2CEVA 1TBHA 4QA2A 3MZ6A 3RLAA 4IE1A 5JI5A 4FCIA 4RHLA 1HQ5A 4A69A 5G0JA 4DZ4A 3CEVA 5FUEA 4GSMA 1GQ7A 4MXRA 4BZ9A 5THUA 3EW8A 5G1CA 3MENA 1WOHA 3F0RA 4GWCA 5G12A 1WVBA 3MFVA 1ZPEA 4Q3RC 4Q3RA 4ZUQA 2A0MA 4I06A 2RLAA 4RHJA 5EEKA 5DC8A 2PHOA 1HQFA 1T5FA 1T5GA 3MFWA 1VKGA 1R1OA 5RLAA 3C0YA 3C0ZA 1P8MA 4HWWA 5D1DA 4MYLA 1TBJA 4ZUPA 4Q41A 3MZ4A 1P8QA 4RHKA 3THHA 4CBYA 4GWDA 1P8NA 4IU5A 5EF7A 3PZLA 5EFHA 3M1RA 1HQXA 1CEVA 3LHLA 4LY1A 1HQGA 1ZPGA 1P8RA 5EFJD 4CEVA 1T4SA 1C3SA 4HXQA 5G3WA 5G0YA 5THVA 1P8PA 4RLAA 2VQWG 3F07A 4ZUNA 3SFFA 4BZ6A 3F80A 2GH6A 3ZNRA 3EWFA 4Q3UA 1C3PA 4HZEA 5BWZA 5IX0A 4IU0A 5FCWA 4IU1A 1T67A 3MZ3A 4QA0A 5G17A 4GSZA 2VQQA 1T64A 3EZPA 5G10A 3NIOA 4BZ7A 3EZTA 2VQMA 1WOIA 4IXUA 1HQHA 3GMZA 4RN0A 5CEVA 3MJLA 5G0XA 1D3VA 2PLLA 4IU4A 4QA7A 1TA1A 4Q3SA 2PHAA 1GQ6A 5EFNA 5EENA 5THSA 4CQFA 5A2SA 4RHMA 5THTA 3LP7A 4Q42A 5D1CA 3F06A 4IE2A 3E8QA 5EF8A 4QA3A 3RQDA 2VQJA 3ZNSA 3SKKA 3E6KA 4QA4A 1T4RA 1T4TA 3E8ZA 1WVAA 4Q3VA 3SJTA 5EFBD 1W22A 1PQ3A 4ZURA 3Q9FA 5G0HA 5G13A 2ZAVA 5DC6A 5EFKB 5G11A 5IWGA 2VQOA 4RN1A 5ICNB 5EEMA 3SFHA 1T4PA 3NIPA 2EF4A 2EF5A 4QA1A 1T69A 4MYKA 3MZ7A 4QA5A 1RLAA 1ZZ3A 5D1BA 4BZ8A 5EFGA 4RHQA 5G1AA 4BZ5A 4RHIA 3E6VA 3SL0A 3Q9EA 4IXVA 2VCGA 3GN0A 5EEFA 4ZUMA 3MMRA 1ZZ0A 3E9BA 4G3HA 4GSVA 2AEBA 4IE3A 4Q3QA 5HJ9A 1P8OA 3SL1A 5EEIA 5G0IA 3TH7A 3KV2A 1ZZ1A 1C3RA 5DC7A 4LXZA 1P8SA 3THJA 5LI3A 2V5XA 4FCKA 4ZUOA 1TBLA 3THEA 4QA6A 5DC5A 3MAXA 1WOGA 2V5WA 4RN2A 3TF3A 3C10A 3Q9CA 4Q3PA 2EIVA
chains in the Genus database with same CATH topology
4MYFA 4ITYA 1XFKA 3DJ8A 3NIQA 4Q3TA 3LP4A 4MYNA 4Q40A 5HJAA 2CEVA 1TBHA 3RLAA 4IE1A 4FCIA 4RHLA 1HQ5A 4DZ4A 3CEVA 4GSMA 1GQ7A 4MXRA 1WOHA 4GWCA 1WVBA 3MFVA 1ZPEA 4Q3RC 4Q3RA 2A0MA 4I06A 2RLAA 4RHJA 2PHOA 1HQFA 1T5FA 1T5GA 3MFWA 1R1OA 5RLAA 1P8MA 4HWWA 4MYLA 1TBJA 4Q41A 1P8QA 4RHKA 3THHA 4GWDA 1P8NA 4IU5A 3PZLA 3M1RA 1HQXA 1CEVA 3LHLA 1HQGA 1ZPGA 1P8RA 4CEVA 1T4SA 4HXQA 1P8PA 4RLAA 3F80A 4Q3UA 4HZEA 4IU0A 4IU1A 4GSZA 3NIOA 1WOIA 4IXUA 1HQHA 3GMZA 5CEVA 3MJLA 1D3VA 2PLLA 4IU4A 1TA1A 4Q3SA 2PHAA 1GQ6A 4RHMA 3LP7A 4Q42A 4IE2A 3E8QA 3SKKA 3E6KA 1T4RA 1T4TA 3E8ZA 1WVAA 4Q3VA 3SJTA 1PQ3A 2ZAVA 1T4PA 3NIPA 2EF4A 2EF5A 4MYKA 1RLAA 4RHQA 4RHIA 3E6VA 3SL0A 4IXVA 3GN0A 3MMRA 3E9BA 4G3HA 4GSVA 2AEBA 4IE3A 4Q3QA 5HJ9A 1P8OA 3SL1A 3TH7A 3KV2A 1P8SA 3THJA 4FCKA 1TBLA 3THEA 1WOGA 3TF3A 4Q3PA 2EIVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MYF A;  4ITY A;  1XFK A;  3DJ8 A;  3NIQ A;  4Q3T A;  3LP4 A;  4MYN A;  4Q40 A;  5HJA A;  2CEV A;  1TBH A;  3RLA A;  4IE1 A;  4FCI A;  4RHL A;  1HQ5 A;  4DZ4 A;  3CEV A;  4GSM A;  1GQ7 A;  4MXR A;  1WOH A;  4GWC A;  1WVB A;  3MFV A;  1ZPE A;  4Q3R C;  4Q3R A;  2A0M A;  4I06 A;  2RLA A;  4RHJ A;  2PHO A;  1HQF A;  1T5F A;  1T5G A;  3MFW A;  1R1O A;  5RLA A;  1P8M A;  4HWW A;  4MYL A;  1TBJ A;  4Q41 A;  1P8Q A;  4RHK A;  3THH A;  4GWD A;  1P8N A;  4IU5 A;  3PZL A;  3M1R A;  1HQX A;  1CEV A;  3LHL A;  1HQG A;  1ZPG A;  1P8R A;  4CEV A;  1T4S A;  4HXQ A;  1P8P A;  4RLA A;  3F80 A;  4Q3U A;  4HZE A;  4IU0 A;  4IU1 A;  4GSZ A;  3NIO A;  1WOI A;  4IXU A;  1HQH A;  3GMZ A;  5CEV A;  3MJL A;  1D3V A;  2PLL A;  4IU4 A;  1TA1 A;  4Q3S A;  2PHA A;  1GQ6 A;  4RHM A;  3LP7 A;  4Q42 A;  4IE2 A;  3E8Q A;  3SKK A;  3E6K A;  1T4R A;  1T4T A;  3E8Z A;  1WVA A;  4Q3V A;  3SJT A;  1PQ3 A;  2ZAV A;  1T4P A;  3NIP A;  2EF4 A;  2EF5 A;  4MYK A;  1RLA A;  4RHQ A;  4RHI A;  3E6V A;  3SL0 A;  4IXV A;  3GN0 A;  3MMR A;  3E9B A;  4G3H A;  4GSV A;  2AEB A;  4IE3 A;  4Q3Q A;  5HJ9 A;  1P8O A;  3SL1 A;  3TH7 A;  3KV2 A;  1P8S A;  3THJ A;  4FCK A;  1TBL A;  3THE A;  1WOG A;  3TF3 A;  4Q3P A;  2EIV A; 
#chains in the Genus database with same CATH topology
 4CBT A;  4MYF A;  5G0G A;  3Q9B A;  4ITY A;  4BKX B;  1XFK A;  3DJ8 A;  3NIQ A;  5G1B A;  2VQV A;  4Q3T A;  3LP4 A;  4MYN A;  4Q40 A;  5HJA A;  2CEV A;  1TBH A;  4QA2 A;  3MZ6 A;  3RLA A;  4IE1 A;  5JI5 A;  4FCI A;  4RHL A;  1HQ5 A;  4A69 A;  5G0J A;  4DZ4 A;  3CEV A;  5FUE A;  4GSM A;  1GQ7 A;  4MXR A;  4BZ9 A;  5THU A;  3EW8 A;  5G1C A;  3MEN A;  1WOH A;  3F0R A;  4GWC A;  5G12 A;  1WVB A;  3MFV A;  1ZPE A;  4Q3R C;  4Q3R A;  4ZUQ A;  2A0M A;  4I06 A;  2RLA A;  4RHJ A;  5EEK A;  5DC8 A;  2PHO A;  1HQF A;  1T5F A;  1T5G A;  3MFW A;  1VKG A;  1R1O A;  5RLA A;  3C0Y A;  3C0Z A;  1P8M A;  4HWW A;  5D1D A;  4MYL A;  1TBJ A;  4ZUP A;  4Q41 A;  3MZ4 A;  1P8Q A;  4RHK A;  3THH A;  4CBY A;  4GWD A;  1P8N A;  4IU5 A;  5EF7 A;  3PZL A;  5EFH A;  3M1R A;  1HQX A;  1CEV A;  3LHL A;  4LY1 A;  1HQG A;  1ZPG A;  1P8R A;  5EFJ D;  4CEV A;  1T4S A;  1C3S A;  4HXQ A;  5G3W A;  5G0Y A;  5THV A;  1P8P A;  4RLA A;  2VQW G;  3F07 A;  4ZUN A;  3SFF A;  4BZ6 A;  3F80 A;  2GH6 A;  3ZNR A;  3EWF A;  4Q3U A;  1C3P A;  4HZE A;  5BWZ A;  5IX0 A;  4IU0 A;  5FCW A;  4IU1 A;  1T67 A;  3MZ3 A;  4QA0 A;  5G17 A;  4GSZ A;  2VQQ A;  1T64 A;  3EZP A;  5G10 A;  3NIO A;  4BZ7 A;  3EZT A;  2VQM A;  1WOI A;  4IXU A;  1HQH A;  3GMZ A;  4RN0 A;  5CEV A;  3MJL A;  5G0X A;  1D3V A;  2PLL A;  4IU4 A;  4QA7 A;  1TA1 A;  4Q3S A;  2PHA A;  1GQ6 A;  5EFN A;  5EEN A;  5THS A;  4CQF A;  5A2S A;  4RHM A;  5THT A;  3LP7 A;  4Q42 A;  5D1C A;  3F06 A;  4IE2 A;  3E8Q A;  5EF8 A;  4QA3 A;  3RQD A;  2VQJ A;  3ZNS A;  3SKK A;  3E6K A;  4QA4 A;  1T4R A;  1T4T A;  3E8Z A;  1WVA A;  4Q3V A;  3SJT A;  5EFB D;  1W22 A;  1PQ3 A;  4ZUR A;  3Q9F A;  5G0H A;  5G13 A;  2ZAV A;  5DC6 A;  5EFK B;  5G11 A;  5IWG A;  2VQO A;  4RN1 A;  5ICN B;  5EEM A;  3SFH A;  1T4P A;  3NIP A;  2EF4 A;  2EF5 A;  4QA1 A;  1T69 A;  4MYK A;  3MZ7 A;  4QA5 A;  1RLA A;  1ZZ3 A;  5D1B A;  4BZ8 A;  5EFG A;  4RHQ A;  5G1A A;  4BZ5 A;  4RHI A;  3E6V A;  3SL0 A;  3Q9E A;  4IXV A;  2VCG A;  3GN0 A;  5EEF A;  4ZUM A;  3MMR A;  1ZZ0 A;  3E9B A;  4G3H A;  4GSV A;  2AEB A;  4IE3 A;  4Q3Q A;  5HJ9 A;  1P8O A;  3SL1 A;  5EEI A;  5G0I A;  3TH7 A;  3KV2 A;  1ZZ1 A;  1C3R A;  5DC7 A;  4LXZ A;  1P8S A;  3THJ A;  5LI3 A;  2V5X A;  4FCK A;  4ZUO A;  1TBL A;  3THE A;  4QA6 A;  5DC5 A;  3MAX A;  1WOG A;  2V5W A;  4RN2 A;  3TF3 A;  3C10 A;  3Q9C A;  4Q3P A;  2EIV A; 
#chains in the Genus database with same CATH homology
 4MYF A;  4ITY A;  1XFK A;  3DJ8 A;  3NIQ A;  4Q3T A;  3LP4 A;  4MYN A;  4Q40 A;  5HJA A;  2CEV A;  1TBH A;  3RLA A;  4IE1 A;  4FCI A;  4RHL A;  1HQ5 A;  4DZ4 A;  3CEV A;  4GSM A;  1GQ7 A;  4MXR A;  1WOH A;  4GWC A;  1WVB A;  3MFV A;  1ZPE A;  4Q3R C;  4Q3R A;  2A0M A;  4I06 A;  2RLA A;  4RHJ A;  2PHO A;  1HQF A;  1T5F A;  1T5G A;  3MFW A;  1R1O A;  5RLA A;  1P8M A;  4HWW A;  4MYL A;  1TBJ A;  4Q41 A;  1P8Q A;  4RHK A;  3THH A;  4GWD A;  1P8N A;  4IU5 A;  3PZL A;  3M1R A;  1HQX A;  1CEV A;  3LHL A;  1HQG A;  1ZPG A;  1P8R A;  4CEV A;  1T4S A;  4HXQ A;  1P8P A;  4RLA A;  3F80 A;  4Q3U A;  4HZE A;  4IU0 A;  4IU1 A;  4GSZ A;  3NIO A;  1WOI A;  4IXU A;  1HQH A;  3GMZ A;  5CEV A;  3MJL A;  1D3V A;  2PLL A;  4IU4 A;  1TA1 A;  4Q3S A;  2PHA A;  1GQ6 A;  4RHM A;  3LP7 A;  4Q42 A;  4IE2 A;  3E8Q A;  3SKK A;  3E6K A;  1T4R A;  1T4T A;  3E8Z A;  1WVA A;  4Q3V A;  3SJT A;  1PQ3 A;  2ZAV A;  1T4P A;  3NIP A;  2EF4 A;  2EF5 A;  4MYK A;  1RLA A;  4RHQ A;  4RHI A;  3E6V A;  3SL0 A;  4IXV A;  3GN0 A;  3MMR A;  3E9B A;  4G3H A;  4GSV A;  2AEB A;  4IE3 A;  4Q3Q A;  5HJ9 A;  1P8O A;  3SL1 A;  3TH7 A;  3KV2 A;  1P8S A;  3THJ A;  4FCK A;  1TBL A;  3THE A;  1WOG A;  3TF3 A;  4Q3P A;  2EIV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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