1XD6A

Crystal structures of novel monomeric monocot mannose-binding lectins from gastrodia elata
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
110
structure length
110
Chain Sequence
SDRLNAGKSLGAGGSLAEGPYLFIMQNDCNLVLYDNNRAVWASGTNGKASNCILKMQRDGNLVIYSGSRAMWASNTNRQDGNYYLILQRDRNVVIYDNSNNAIWASGTNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifungal protein
molecule keywords gastrodianin-4
publication title Structural Mechanism Governing the Quaternary Organization of Monocot Mannose-binding Lectin Revealed by the Novel Monomeric Structure of an Orchid Lectin
pubmed doi rcsb
total genus 24
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2004-09-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.90.10.10 Mainly Beta Orthogonal Prism Agglutinin, subunit A Bulb-type lectin domain 1xd6A00
1MSAA 3A0DA 2DPFA 5J76B 5J76A 5T1XB 5T20B 1JPCA 4PDTA 5D9ZB 5T1XA 5T20A 1BWUQ 5D9ZA 3M7JA 4TKCA 4GC1A 4H3OA 1BWUP 3DZWA 4GC2A 3M7HA 1DLPA 3A0EA 3A0CA 1B2PA 1KJ1A 1BWUA 2D04A 3R0EB 2D04B 1NIVA 3R0EA 3MEZB 1NPLA 3MEZA 5D5GB 5D5GA 1XD6A 1XD5A 1KJ1D 1BWUD
chains in the Genus database with same CATH superfamily
1MSAA 3A0DA 2DPFA 5J76B 5J76A 5T1XB 5T20B 1JPCA 4PDTA 5D9ZB 5T1XA 5T20A 4LE7A 1BWUQ 5D9ZA 3M7JA 4OKCA 4GC1A 4H3OA 4TKCA 1BWUP 3DZWA 4GC2A 4LEAA 3M7HA 1DLPA 3A0EA 3A0CA 1B2PA 1KJ1A 4LEDA 4OIZA 1BWUA 2D04A 3R0EB 2D04B 1NIVA 3R0EA 4OITA 3MEZB 1NPLA 3MEZA 5D5GB 5D5GA 1XD6A 1XD5A 1KJ1D 1BWUD
chains in the Genus database with same CATH topology
1MSAA 3A0DA 2DPFA 5J76B 5J76A 5T1XB 5T20B 1JPCA 4PDTA 5D9ZB 5T1XA 5T20A 1BWUQ 5D9ZA 3M7JA 4TKCA 4GC1A 4H3OA 1BWUP 3DZWA 4GC2A 3M7HA 1DLPA 3A0EA 3A0CA 1B2PA 1KJ1A 1BWUA 2D04A 3R0EB 2D04B 1NIVA 3R0EA 3MEZB 1NPLA 3MEZA 5D5GB 5D5GA 1XD6A 1XD5A 1KJ1D 1BWUD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MSA A;  3A0D A;  2DPF A;  5J76 B;  5J76 A;  5T1X B;  5T20 B;  1JPC A;  4PDT A;  5D9Z B;  5T1X A;  5T20 A;  1BWU Q;  5D9Z A;  3M7J A;  4TKC A;  4GC1 A;  4H3O A;  1BWU P;  3DZW A;  4GC2 A;  3M7H A;  1DLP A;  3A0E A;  3A0C A;  1B2P A;  1KJ1 A;  1BWU A;  2D04 A;  3R0E B;  2D04 B;  1NIV A;  3R0E A;  3MEZ B;  1NPL A;  3MEZ A;  5D5G B;  5D5G A;  1XD6 A;  1XD5 A;  1KJ1 D;  1BWU D; 
#chains in the Genus database with same CATH topology
 1MSA A;  3A0D A;  2DPF A;  5J76 B;  5J76 A;  5T1X B;  5T20 B;  1JPC A;  4PDT A;  5D9Z B;  5T1X A;  5T20 A;  4LE7 A;  1BWU Q;  5D9Z A;  3M7J A;  4OKC A;  4GC1 A;  4H3O A;  4TKC A;  1BWU P;  3DZW A;  4GC2 A;  4LEA A;  3M7H A;  1DLP A;  3A0E A;  3A0C A;  1B2P A;  1KJ1 A;  4LED A;  4OIZ A;  1BWU A;  2D04 A;  3R0E B;  2D04 B;  1NIV A;  3R0E A;  4OIT A;  3MEZ B;  1NPL A;  3MEZ A;  5D5G B;  5D5G A;  1XD6 A;  1XD5 A;  1KJ1 D;  1BWU D; 
#chains in the Genus database with same CATH homology
 1MSA A;  3A0D A;  2DPF A;  5J76 B;  5J76 A;  5T1X B;  5T20 B;  1JPC A;  4PDT A;  5D9Z B;  5T1X A;  5T20 A;  1BWU Q;  5D9Z A;  3M7J A;  4TKC A;  4GC1 A;  4H3O A;  1BWU P;  3DZW A;  4GC2 A;  3M7H A;  1DLP A;  3A0E A;  3A0C A;  1B2P A;  1KJ1 A;  1BWU A;  2D04 A;  3R0E B;  2D04 B;  1NIV A;  3R0E A;  3MEZ B;  1NPL A;  3MEZ A;  5D5G B;  5D5G A;  1XD6 A;  1XD5 A;  1KJ1 D;  1BWU D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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