1YI2H

Crystal structure of erythromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S Ribosomal RNA
publication title Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
pubmed doi rcsb
total genus 39
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2005-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1yi2H00
1WKIA 1VQ4H 1VQ9H 1VQ5H 2ZJRJ 3CMEH 3CXCH 5AN9F 1KQSH 1VQKH 5GAHN 3CPWH 1VQMH 2ZJPJ 1W2BH 3CCLH 1QVFH 2ZJQJ 3DLLJ 1KC8J 5DM7J 1KD1J 5DM6J 1M1KJ 1YHQH 1S72H 1K8AJ 4U67J 1VQPH 4WFBJ 3I56H 1YIJH 1Q81J 2PA2A 4IOCJ 3CCQH 1Y69K 3CCJH 2QEXH 3CC2H 3CMAH 1VQ7H 3OW2H 5H1SO 3PIOJ 3CCSH 3CCVH 5MLCO 2OTJH 1Q82J 2QA4H 3CC7H 5GAGN 1VQOH 1YJ9H 1VQ8H 3G6EH 4WF9J 4IOAJ 4WFAJ 3CCEH 1K73J 1Q86J 2OTLH 3CCMH 3CF5J 4IO9J 1NJIJ 3CD6H 1VQLH 5JVGJ 3G4SH 1YJWH 1YJNH 3CCUH 1VQNH 5GAEN 4WCEJ 3G71H 5GADN 1K9MJ 1Q7YJ 5HL7J 1YI2H 3J7ZM 3PIPJ 1N8RJ 1QVGH 3I55H 1VQ6H 1M90J 3CCRH 4UY8M 1YITH 5JVHJ 3CC4H 1JJ2H 4WFNJ
chains in the Genus database with same CATH superfamily
1QPOA 4USAA 1WKIA 3TQVA 1VQ4H 1VQ9H 1YTDA 4US8A 1QVFH 3NRZC 2I1OA 1VQ5H 2ZJRJ 3CMEH 3GNNA 2J0FA 3WO0A 4LHMA 4YYYA 1JRPB 1YTKA 4EADA 3CXCH 4US9A 5AN9F 3BIIE 1KQSH 1VQKH 1FIQC 1N63B 3AM9A 2W3SB 2W54B 2B7PA 4GA5A 5GAHN 3CPWH 1VQMH 2ZJPJ 1W2BH 2B7NA 1N5WB 1FFVB 5AYYA 3CCLH 3CC4H 1VDVA 4XR5A 5MPOC 2WP4A 4YEKA 1BRWA 5EY3A 3C2FA 2ZJQJ 2TPTA 3DLLJ 1KC8J 5DM7J 5AYXA 1KD1J 5DM6J 1AZYA 4KWVA 1YHQH 3H5QA 1S72H 1K8AJ 1FMAE 4X46A 3L4PA 4U67J 5HULA 1RM6A 2W3RB 1N61B 1JROB 1VQPH 3NVZC 4WFBJ 3EUB4 3I56H 1YIJH 1Q81J 2PA2A 4IOCJ 3CCQH 2QIEA 1Y69K 3SR6C 1N60B 3CCJH 5EP8A 2QEXH 3CC2H 3CMAH 1VQ7H 4ZOHA 3PAJA 3OW2H 5H1SO 3PIOJ 4EAFA 2B7QA 3CCSH 1M1KJ 3AN1A 2DSJA 3CCVH 1ZXIB 5MLCO 2OTJH 4GA4A 1Q82J 2QA4H 3NVYC 2I14A 3CC7H 5GAGN 1VQOH 1YJ9H 1VQ8H 4C7YA 3G6EH 4WF9J 1OTPA 3C2VA 4WFAJ 1YTEA 2OMDA 2E3TA 3CCEH 4IOAJ 3NS1C 1K73J 1Q86J 3ETRC 4WFNJ 5HUPA 1O4UA 1WYGA 1UOUA 2OTLH 3CCMH 4C7ZA 3WNZA 3CF5J 1DGJA 1NVIE 2Q5WE 1N5XA 1V97A 1VLBA 4IO9J 1NJIJ 1NVJA 3CD6H 1QAPA 3NVVC 1VQLH 4AP8A 5JVGJ 1QPQA 3L0GA 4I9AA 3WO1A 2WK6A 4GA6A 3G4SH 1YJWH 3FAHA 3NVWC 1YJNH 3CCUH 1X1OA 4KWWA 2WK5A 1VQNH 1N62B 4C80A 5AYZA 5GAEN 1FM0E 3C2EA 1SB3A 4WCEJ 3AMZA 3G71H 5GADN 1K9MJ 1Q7YJ 1SIJA 3C2OA 5HL7J 3J7ZM 3PIPJ 1YI2H 1N8RJ 3RPFA 5HUOA 3I55H 2JBMA 1QVGH 2W55B 3VMMA 3B9JC 1M90J 1VQ6H 3CCRH 4UY8M 1YITH 1FFUB 1FO4A 5JVHJ 1QPNA 1JJ2H 3C2RA 3FC4A 1QPRA
chains in the Genus database with same CATH topology
1WKIA 1VQ4H 1VQ9H 1VQ5H 2ZJRJ 3CMEH 3CXCH 5AN9F 1KQSH 1VQKH 5GAHN 3CPWH 1VQMH 2ZJPJ 1W2BH 3CCLH 1QVFH 2ZJQJ 3DLLJ 1KC8J 5DM7J 1KD1J 5DM6J 1M1KJ 1YHQH 1S72H 1K8AJ 4U67J 1VQPH 4WFBJ 3I56H 1YIJH 1Q81J 2PA2A 4IOCJ 3CCQH 1Y69K 3CCJH 2QEXH 3CC2H 3CMAH 1VQ7H 3OW2H 5H1SO 3PIOJ 3CCSH 3CCVH 5MLCO 2OTJH 1Q82J 2QA4H 3CC7H 5GAGN 1VQOH 1YJ9H 1VQ8H 3G6EH 4WF9J 4IOAJ 4WFAJ 3CCEH 1K73J 1Q86J 2OTLH 3CCMH 3CF5J 4IO9J 1NJIJ 3CD6H 1VQLH 5JVGJ 3G4SH 1YJWH 1YJNH 3CCUH 1VQNH 5GAEN 4WCEJ 3G71H 5GADN 1K9MJ 1Q7YJ 5HL7J 1YI2H 3J7ZM 3PIPJ 1N8RJ 1QVGH 3I55H 1VQ6H 1M90J 3CCRH 4UY8M 1YITH 5JVHJ 3CC4H 1JJ2H 4WFNJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WKI A;  1VQ4 H;  1VQ9 H;  1VQ5 H;  2ZJR J;  3CME H;  3CXC H;  5AN9 F;  1KQS H;  1VQK H;  5GAH N;  3CPW H;  1VQM H;  2ZJP J;  1W2B H;  3CCL H;  1QVF H;  2ZJQ J;  3DLL J;  1KC8 J;  5DM7 J;  1KD1 J;  5DM6 J;  1M1K J;  1YHQ H;  1S72 H;  1K8A J;  4U67 J;  1VQP H;  4WFB J;  3I56 H;  1YIJ H;  1Q81 J;  2PA2 A;  4IOC J;  3CCQ H;  1Y69 K;  3CCJ H;  2QEX H;  3CC2 H;  3CMA H;  1VQ7 H;  3OW2 H;  5H1S O;  3PIO J;  3CCS H;  3CCV H;  5MLC O;  2OTJ H;  1Q82 J;  2QA4 H;  3CC7 H;  5GAG N;  1VQO H;  1YJ9 H;  1VQ8 H;  3G6E H;  4WF9 J;  4IOA J;  4WFA J;  3CCE H;  1K73 J;  1Q86 J;  2OTL H;  3CCM H;  3CF5 J;  4IO9 J;  1NJI J;  3CD6 H;  1VQL H;  5JVG J;  3G4S H;  1YJW H;  1YJN H;  3CCU H;  1VQN H;  5GAE N;  4WCE J;  3G71 H;  5GAD N;  1K9M J;  1Q7Y J;  5HL7 J;  1YI2 H;  3J7Z M;  3PIP J;  1N8R J;  1QVG H;  3I55 H;  1VQ6 H;  1M90 J;  3CCR H;  4UY8 M;  1YIT H;  5JVH J;  3CC4 H;  1JJ2 H;  4WFN J; 
#chains in the Genus database with same CATH topology
 1QPO A;  4USA A;  1WKI A;  3TQV A;  1VQ4 H;  1VQ9 H;  1YTD A;  4US8 A;  1QVF H;  3NRZ C;  2I1O A;  1VQ5 H;  2ZJR J;  3CME H;  3GNN A;  2J0F A;  3WO0 A;  4LHM A;  4YYY A;  1JRP B;  1YTK A;  4EAD A;  3CXC H;  4US9 A;  5AN9 F;  3BII E;  1KQS H;  1VQK H;  1FIQ C;  1N63 B;  3AM9 A;  2W3S B;  2W54 B;  2B7P A;  4GA5 A;  5GAH N;  3CPW H;  1VQM H;  2ZJP J;  1W2B H;  2B7N A;  1N5W B;  1FFV B;  5AYY A;  3CCL H;  3CC4 H;  1VDV A;  4XR5 A;  5MPO C;  2WP4 A;  4YEK A;  1BRW A;  5EY3 A;  3C2F A;  2ZJQ J;  2TPT A;  3DLL J;  1KC8 J;  5DM7 J;  5AYX A;  1KD1 J;  5DM6 J;  1AZY A;  4KWV A;  1YHQ H;  3H5Q A;  1S72 H;  1K8A J;  1FMA E;  4X46 A;  3L4P A;  4U67 J;  5HUL A;  1RM6 A;  2W3R B;  1N61 B;  1JRO B;  1VQP H;  3NVZ C;  4WFB J;  3EUB 4;  3I56 H;  1YIJ H;  1Q81 J;  2PA2 A;  4IOC J;  3CCQ H;  2QIE A;  1Y69 K;  3SR6 C;  1N60 B;  3CCJ H;  5EP8 A;  2QEX H;  3CC2 H;  3CMA H;  1VQ7 H;  4ZOH A;  3PAJ A;  3OW2 H;  5H1S O;  3PIO J;  4EAF A;  2B7Q A;  3CCS H;  1M1K J;  3AN1 A;  2DSJ A;  3CCV H;  1ZXI B;  5MLC O;  2OTJ H;  4GA4 A;  1Q82 J;  2QA4 H;  3NVY C;  2I14 A;  3CC7 H;  5GAG N;  1VQO H;  1YJ9 H;  1VQ8 H;  4C7Y A;  3G6E H;  4WF9 J;  1OTP A;  3C2V A;  4WFA J;  1YTE A;  2OMD A;  2E3T A;  3CCE H;  4IOA J;  3NS1 C;  1K73 J;  1Q86 J;  3ETR C;  4WFN J;  5HUP A;  1O4U A;  1WYG A;  1UOU A;  2OTL H;  3CCM H;  4C7Z A;  3WNZ A;  3CF5 J;  1DGJ A;  1NVI E;  2Q5W E;  1N5X A;  1V97 A;  1VLB A;  4IO9 J;  1NJI J;  1NVJ A;  3CD6 H;  1QAP A;  3NVV C;  1VQL H;  4AP8 A;  5JVG J;  1QPQ A;  3L0G A;  4I9A A;  3WO1 A;  2WK6 A;  4GA6 A;  3G4S H;  1YJW H;  3FAH A;  3NVW C;  1YJN H;  3CCU H;  1X1O A;  4KWW A;  2WK5 A;  1VQN H;  1N62 B;  4C80 A;  5AYZ A;  5GAE N;  1FM0 E;  3C2E A;  1SB3 A;  4WCE J;  3AMZ A;  3G71 H;  5GAD N;  1K9M J;  1Q7Y J;  1SIJ A;  3C2O A;  5HL7 J;  3J7Z M;  3PIP J;  1YI2 H;  1N8R J;  3RPF A;  5HUO A;  3I55 H;  2JBM A;  1QVG H;  2W55 B;  3VMM A;  3B9J C;  1M90 J;  1VQ6 H;  3CCR H;  4UY8 M;  1YIT H;  1FFU B;  1FO4 A;  5JVH J;  1QPN A;  1JJ2 H;  3C2R A;  3FC4 A;  1QPR A; 
#chains in the Genus database with same CATH homology
 1WKI A;  1VQ4 H;  1VQ9 H;  1VQ5 H;  2ZJR J;  3CME H;  3CXC H;  5AN9 F;  1KQS H;  1VQK H;  5GAH N;  3CPW H;  1VQM H;  2ZJP J;  1W2B H;  3CCL H;  1QVF H;  2ZJQ J;  3DLL J;  1KC8 J;  5DM7 J;  1KD1 J;  5DM6 J;  1M1K J;  1YHQ H;  1S72 H;  1K8A J;  4U67 J;  1VQP H;  4WFB J;  3I56 H;  1YIJ H;  1Q81 J;  2PA2 A;  4IOC J;  3CCQ H;  1Y69 K;  3CCJ H;  2QEX H;  3CC2 H;  3CMA H;  1VQ7 H;  3OW2 H;  5H1S O;  3PIO J;  3CCS H;  3CCV H;  5MLC O;  2OTJ H;  1Q82 J;  2QA4 H;  3CC7 H;  5GAG N;  1VQO H;  1YJ9 H;  1VQ8 H;  3G6E H;  4WF9 J;  4IOA J;  4WFA J;  3CCE H;  1K73 J;  1Q86 J;  2OTL H;  3CCM H;  3CF5 J;  4IO9 J;  1NJI J;  3CD6 H;  1VQL H;  5JVG J;  3G4S H;  1YJW H;  1YJN H;  3CCU H;  1VQN H;  5GAE N;  4WCE J;  3G71 H;  5GAD N;  1K9M J;  1Q7Y J;  5HL7 J;  1YI2 H;  3J7Z M;  3PIP J;  1N8R J;  1QVG H;  3I55 H;  1VQ6 H;  1M90 J;  3CCR H;  4UY8 M;  1YIT H;  5JVH J;  3CC4 H;  1JJ2 H;  4WFN J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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