1YIJH

Crystal structure of telithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S Ribosomal RNA
publication title Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
pubmed doi rcsb
total genus 39
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1yijH00
4UY8M 3CCVH 3CCEH 3G4SH 2OTLH 3CCRH 3CD6H 3I56H 2QA4H 2QEXH 4IO9J 1VQ9H 3CCQH 5GAGN 3CC7H 3PIOJ 4WCEJ 4WFAJ 1YITH 5JVHJ 4WFBJ 1QVFH 3CCLH 3CCMH 5AN9F 1VQ8H 3CCJH 1VQKH 5GADN 1VQ5H 1YI2H 3DLLJ 3I55H 4WFNJ 2ZJPJ 1YIJH 5MLCO 1YJ9H 3CCSH 1Q7YJ 3CMEH 5DM6J 3J7ZM 3CXCH 1K9MJ 1Q82J 4WF9J 3CC2H 5H1SO 1VQ6H 1VQOH 1VQ4H 2ZJQJ 2OTJH 4U67J 1YJNH 1W2BH 5GAHN 1K73J 5GAEN 1Y69K 3CPWH 3CF5J 5HL7J 1NJIJ 3CC4H 1VQLH 1YHQH 3OW2H 5JVGJ 1WKIA 1YJWH 3G71H 1VQNH 1VQ7H 1QVGH 1VQMH 3G6EH 1N8RJ 1M1KJ 4IOAJ 1K8AJ 1S72H 1VQPH 1Q81J 3CMAH 1KD1J 2ZJRJ 2PA2A 1KQSH 5DM7J 3CCUH 1Q86J 1M90J 1KC8J 4IOCJ 3PIPJ 1JJ2H
chains in the Genus database with same CATH superfamily
4UY8M 4KWVA 1N63B 3CCVH 3NRZC 1V97A 3CCEH 4YYYA 3G4SH 5MPOC 2Q5WE 1WYGA 2OMDA 5EP8A 2OTLH 2WK6A 3AN1A 3CCRH 3WO0A 4AP8A 3CD6H 1QAPA 3I56H 1JROB 3AMZA 2QA4H 1FIQC 2QEXH 3WO1A 4IO9J 1VQ9H 1BRWA 3CCQH 1VLBA 4C7YA 5AYYA 5GAGN 2W3SB 3FC4A 3VMMA 5EY3A 3CC7H 1YTEA 3PIOJ 2W55B 4WCEJ 4WFAJ 1YITH 1NVIE 2DSJA 5JVHJ 4EADA 2WK5A 5HUPA 4US8A 1FMAE 3C2RA 4WFBJ 4GA5A 3WNZA 4YEKA 1QVFH 3CCLH 1O4UA 5AN9F 3CCMH 1N5WB 3AM9A 1VQ8H 1VQKH 3CCJH 1ZXIB 3NS1C 3NVZC 5GADN 3L4PA 1SIJA 1OTPA 1VQ5H 2W3RB 1YI2H 3DLLJ 1QPQA 2WP4A 3I55H 4WFNJ 2B7PA 2ZJPJ 2JBMA 5MLCO 1YIJH 1YTKA 3PAJA 1YJ9H 1N62B 2B7NA 2W54B 3CCSH 3C2OA 1YTDA 1Q7YJ 1FFVB 2QIEA 4US9A 1AZYA 2TPTA 4ZOHA 3CMEH 4LHMA 1X1OA 1QPOA 5DM6J 3J7ZM 5AYXA 3CXCH 1K9MJ 1Q82J 5AYZA 4WF9J 3CC2H 5H1SO 1UOUA 3H5QA 1VQOH 1VQ4H 1VQ6H 3C2VA 1QPRA 3EUB4 2ZJQJ 1RM6A 1N5XA 2OTJH 2I14A 4C80A 4U67J 3SR6C 3NVVC 3L0GA 3C2EA 1YJNH 2E3TA 5GAHN 1W2BH 1K73J 1FO4A 4GA4A 5GAEN 1Y69K 3CPWH 3GNNA 4C7ZA 3CF5J 5HULA 1VDVA 5HL7J 1NJIJ 3CC4H 3TQVA 1VQLH 1YHQH 3OW2H 3NVYC 5JVGJ 2I1OA 3B9JC 1WKIA 1YJWH 1NVJA 3G71H 1VQNH 1VQ7H 1QVGH 1VQMH 3ETRC 1QPNA 3G6EH 1N8RJ 1JRPB 1DGJA 1N61B 4KWWA 4USAA 1FFUB 1M1KJ 2B7QA 4EAFA 4IOAJ 1K8AJ 4XR5A 1S72H 4I9AA 4X46A 1VQPH 1FM0E 2J0FA 1Q81J 3CMAH 1KD1J 3FAHA 5HUOA 2ZJRJ 1N60B 1SB3A 2PA2A 5DM7J 1KQSH 3CCUH 3BIIE 1Q86J 1M90J 1KC8J 4IOCJ 3C2FA 4GA6A 3PIPJ 3RPFA 3NVWC 1JJ2H
chains in the Genus database with same CATH topology
4UY8M 3CCVH 3CCEH 3G4SH 2OTLH 3CCRH 3CD6H 3I56H 2QA4H 2QEXH 4IO9J 1VQ9H 3CCQH 5GAGN 3CC7H 3PIOJ 4WCEJ 4WFAJ 1YITH 5JVHJ 4WFBJ 1QVFH 3CCLH 3CCMH 5AN9F 1VQ8H 3CCJH 1VQKH 5GADN 1VQ5H 1YI2H 3DLLJ 3I55H 4WFNJ 2ZJPJ 1YIJH 5MLCO 1YJ9H 3CCSH 1Q7YJ 3CMEH 5DM6J 3J7ZM 3CXCH 1K9MJ 1Q82J 4WF9J 3CC2H 5H1SO 1VQ6H 1VQOH 1VQ4H 2ZJQJ 2OTJH 4U67J 1YJNH 1W2BH 5GAHN 1K73J 5GAEN 1Y69K 3CPWH 3CF5J 5HL7J 1NJIJ 3CC4H 1VQLH 1YHQH 3OW2H 5JVGJ 1WKIA 1YJWH 3G71H 1VQNH 1VQ7H 1QVGH 1VQMH 3G6EH 1N8RJ 1M1KJ 4IOAJ 1K8AJ 1S72H 1VQPH 1Q81J 3CMAH 1KD1J 2ZJRJ 2PA2A 1KQSH 5DM7J 3CCUH 1Q86J 1M90J 1KC8J 4IOCJ 3PIPJ 1JJ2H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UY8 M;  3CCV H;  3CCE H;  3G4S H;  2OTL H;  3CCR H;  3CD6 H;  3I56 H;  2QA4 H;  2QEX H;  4IO9 J;  1VQ9 H;  3CCQ H;  5GAG N;  3CC7 H;  3PIO J;  4WCE J;  4WFA J;  1YIT H;  5JVH J;  4WFB J;  1QVF H;  3CCL H;  3CCM H;  5AN9 F;  1VQ8 H;  3CCJ H;  1VQK H;  5GAD N;  1VQ5 H;  1YI2 H;  3DLL J;  3I55 H;  4WFN J;  2ZJP J;  1YIJ H;  5MLC O;  1YJ9 H;  3CCS H;  1Q7Y J;  3CME H;  5DM6 J;  3J7Z M;  3CXC H;  1K9M J;  1Q82 J;  4WF9 J;  3CC2 H;  5H1S O;  1VQ6 H;  1VQO H;  1VQ4 H;  2ZJQ J;  2OTJ H;  4U67 J;  1YJN H;  1W2B H;  5GAH N;  1K73 J;  5GAE N;  1Y69 K;  3CPW H;  3CF5 J;  5HL7 J;  1NJI J;  3CC4 H;  1VQL H;  1YHQ H;  3OW2 H;  5JVG J;  1WKI A;  1YJW H;  3G71 H;  1VQN H;  1VQ7 H;  1QVG H;  1VQM H;  3G6E H;  1N8R J;  1M1K J;  4IOA J;  1K8A J;  1S72 H;  1VQP H;  1Q81 J;  3CMA H;  1KD1 J;  2ZJR J;  2PA2 A;  1KQS H;  5DM7 J;  3CCU H;  1Q86 J;  1M90 J;  1KC8 J;  4IOC J;  3PIP J;  1JJ2 H; 
#chains in the Genus database with same CATH topology
 4UY8 M;  4KWV A;  1N63 B;  3CCV H;  3NRZ C;  1V97 A;  3CCE H;  4YYY A;  3G4S H;  5MPO C;  2Q5W E;  1WYG A;  2OMD A;  5EP8 A;  2OTL H;  2WK6 A;  3AN1 A;  3CCR H;  3WO0 A;  4AP8 A;  3CD6 H;  1QAP A;  3I56 H;  1JRO B;  3AMZ A;  2QA4 H;  1FIQ C;  2QEX H;  3WO1 A;  4IO9 J;  1VQ9 H;  1BRW A;  3CCQ H;  1VLB A;  4C7Y A;  5AYY A;  5GAG N;  2W3S B;  3FC4 A;  3VMM A;  5EY3 A;  3CC7 H;  1YTE A;  3PIO J;  2W55 B;  4WCE J;  4WFA J;  1YIT H;  1NVI E;  2DSJ A;  5JVH J;  4EAD A;  2WK5 A;  5HUP A;  4US8 A;  1FMA E;  3C2R A;  4WFB J;  4GA5 A;  3WNZ A;  4YEK A;  1QVF H;  3CCL H;  1O4U A;  5AN9 F;  3CCM H;  1N5W B;  3AM9 A;  1VQ8 H;  1VQK H;  3CCJ H;  1ZXI B;  3NS1 C;  3NVZ C;  5GAD N;  3L4P A;  1SIJ A;  1OTP A;  1VQ5 H;  2W3R B;  1YI2 H;  3DLL J;  1QPQ A;  2WP4 A;  3I55 H;  4WFN J;  2B7P A;  2ZJP J;  2JBM A;  5MLC O;  1YIJ H;  1YTK A;  3PAJ A;  1YJ9 H;  1N62 B;  2B7N A;  2W54 B;  3CCS H;  3C2O A;  1YTD A;  1Q7Y J;  1FFV B;  2QIE A;  4US9 A;  1AZY A;  2TPT A;  4ZOH A;  3CME H;  4LHM A;  1X1O A;  1QPO A;  5DM6 J;  3J7Z M;  5AYX A;  3CXC H;  1K9M J;  1Q82 J;  5AYZ A;  4WF9 J;  3CC2 H;  5H1S O;  1UOU A;  3H5Q A;  1VQO H;  1VQ4 H;  1VQ6 H;  3C2V A;  1QPR A;  3EUB 4;  2ZJQ J;  1RM6 A;  1N5X A;  2OTJ H;  2I14 A;  4C80 A;  4U67 J;  3SR6 C;  3NVV C;  3L0G A;  3C2E A;  1YJN H;  2E3T A;  5GAH N;  1W2B H;  1K73 J;  1FO4 A;  4GA4 A;  5GAE N;  1Y69 K;  3CPW H;  3GNN A;  4C7Z A;  3CF5 J;  5HUL A;  1VDV A;  5HL7 J;  1NJI J;  3CC4 H;  3TQV A;  1VQL H;  1YHQ H;  3OW2 H;  3NVY C;  5JVG J;  2I1O A;  3B9J C;  1WKI A;  1YJW H;  1NVJ A;  3G71 H;  1VQN H;  1VQ7 H;  1QVG H;  1VQM H;  3ETR C;  1QPN A;  3G6E H;  1N8R J;  1JRP B;  1DGJ A;  1N61 B;  4KWW A;  4USA A;  1FFU B;  1M1K J;  2B7Q A;  4EAF A;  4IOA J;  1K8A J;  4XR5 A;  1S72 H;  4I9A A;  4X46 A;  1VQP H;  1FM0 E;  2J0F A;  1Q81 J;  3CMA H;  1KD1 J;  3FAH A;  5HUO A;  2ZJR J;  1N60 B;  1SB3 A;  2PA2 A;  5DM7 J;  1KQS H;  3CCU H;  3BII E;  1Q86 J;  1M90 J;  1KC8 J;  4IOC J;  3C2F A;  4GA6 A;  3PIP J;  3RPF A;  3NVW C;  1JJ2 H; 
#chains in the Genus database with same CATH homology
 4UY8 M;  3CCV H;  3CCE H;  3G4S H;  2OTL H;  3CCR H;  3CD6 H;  3I56 H;  2QA4 H;  2QEX H;  4IO9 J;  1VQ9 H;  3CCQ H;  5GAG N;  3CC7 H;  3PIO J;  4WCE J;  4WFA J;  1YIT H;  5JVH J;  4WFB J;  1QVF H;  3CCL H;  3CCM H;  5AN9 F;  1VQ8 H;  3CCJ H;  1VQK H;  5GAD N;  1VQ5 H;  1YI2 H;  3DLL J;  3I55 H;  4WFN J;  2ZJP J;  1YIJ H;  5MLC O;  1YJ9 H;  3CCS H;  1Q7Y J;  3CME H;  5DM6 J;  3J7Z M;  3CXC H;  1K9M J;  1Q82 J;  4WF9 J;  3CC2 H;  5H1S O;  1VQ6 H;  1VQO H;  1VQ4 H;  2ZJQ J;  2OTJ H;  4U67 J;  1YJN H;  1W2B H;  5GAH N;  1K73 J;  5GAE N;  1Y69 K;  3CPW H;  3CF5 J;  5HL7 J;  1NJI J;  3CC4 H;  1VQL H;  1YHQ H;  3OW2 H;  5JVG J;  1WKI A;  1YJW H;  3G71 H;  1VQN H;  1VQ7 H;  1QVG H;  1VQM H;  3G6E H;  1N8R J;  1M1K J;  4IOA J;  1K8A J;  1S72 H;  1VQP H;  1Q81 J;  3CMA H;  1KD1 J;  2ZJR J;  2PA2 A;  1KQS H;  5DM7 J;  3CCU H;  1Q86 J;  1M90 J;  1KC8 J;  4IOC J;  3PIP J;  1JJ2 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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