1YTBA

Crystal structure of a yeast tbp/tata-box complex
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
180
structure length
180
Chain Sequence
SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords DNA (29MER)
publication title Crystal structure of a yeast TBP/TATA-box complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 42
structure length 180
sequence length 180
chains with identical sequence B
ec nomenclature
pdb deposition date 1994-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1ytbA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1ytbA02
1QTPA 1VTOA 1C9BB 1VOKA 1QNCA 1TGHA 2IV8A 1NH2A 2G30A 4ROCB 3ASMA 1QNBA 4PY5A 1KYFA 2D0AA 4B0AA 1B9KA 1JFIC 1QN8A 1QN3A 1QN5A 1D3UA 1E42A 1VTLE 5IYBP 3HS8A 3EIKA 1YTFA 2IV9A 1TBAB 1QN7A 1W80A 1MP9A 1R4XA 5IYDP 1KY7A 1KYUA 2D0BA 1YTBA 5IYCP 2MJ7A 2VJ0A 1QN9A 3H1ZA 1QNAA 1QN4A 3OCIA 4RODB 1PZDA 1PCZA 3OC3C 3HS9A 3VN5A 1RM1A 1QTSA 1NGMA 1AISA 4WZSD 1CDWA 1QNEA 1KY6A 1NVPA 4ROEB 2D0CA 1VOLB 1TBPA 1QN6A 1KYDA 2Z8UA
chains in the Genus database with same CATH superfamily
1VTOA 1DIZA 1PVSA 2YH5A 3CVSA 2IV8A 2NLVA 2R5XA 2JOIA 3OH9A 1KYFA 4B0AA 2QR1A 2O3OA 3KRMA 1QN5A 1QN8A 2NOHA 3IH7A 2DKDA 4WXAA 2QRCA 1YTFA 3CWAA 1QN7A 2HKPA 1KFIA 1C47A 3BKQX 3F10A 4CFFA 2NOBA 5HSHA 3CWSA 1K2YX 2NWVA 5F9CA 2MJ7A 2VJ0A 5IYCP 3D7QA 3H1ZA 1J3MA 3EAYA 2NOLA 1EBMA 1LXTA 2Z0FA 3OSTA 1M3QA 1LWVA 2NOEA 2F7LA 1KO9A 1QNEA 1KY6A 4ROEB 1QN6A 3C04A 2XHIA 5BMPA 2Z8UA 2OOYA 3NA5A 2HL9A 1XSZA 1WJWA 2HL8A 1YQLA 4QG5A 2G30A 5JMVD 4PY5A 3RSMA 2JPIA 1N39A 4C7PA 1QN3A 2QRDA 1E42A 5JN5A 5IYBP 2NOZA 3ENOC 1N3CA 2HZSA 3HS8A 1YQMA 3I0XA 3SNSA 2ZFDB 4BJUA 1KYUA 1KFQA 1YTBA 4EAIA 1QN9A 1M5Q1 2V92A 4I8OA 1PCJX 1QN4A 4RODB 2Y8LA 4Q11A 3VN5A 1K35A 2LAEA 4WZSD 3RPJA 4EAKA 1VOLB 2D0CA 1P5DX 3DPTA 1C4GA 2NOFA 2MZ8A 2JHJA 1QTPA 1C9BB 3UW2A 1Q9UA 1TGHA 3OLPA 4EALA 4ROCB 3ASMA 2EHBD 1M3HA 2H5AX 2D0AA 1VKLA 1V5SA 1B9KA 5EPCA 3CWTA 1D3UA 3EIKA 2QREA 5BMNA 1TBAB 1W80A 1MP9A 1LWWA 3CWUA 5IYDP 1KY7A 2D0BA 2DKCA 3ULXA 5KL0A 4EAGA 3N89A 2FUVA 1MPGA 3OCIA 2NOIA 2FGTA 1PCZA 1UL7A 1N3AA 3PDKA 1CDWA 1RM1A 2YA3A 1JDYA 3ENCA 3CVTA 4EJYA 1P5GX 2Y8QA 1TBPA 3OGDA 3PMGA 4D7QA 2HZMA 1KYDA 2FKMX 4HJHA 2V8QA 1YQRA 1LWYA 3KTUA 1VOKA 2H4LX 1QNCA 3I0WA 1NH2A 4IL8A 1QNBA 2V9JA 4TPSA 1FN7A 1JFIC 1UT4A 1VTLE 2NVMA 1HU0A 3CW7A 3D4VA 3OSMA 3I3WA 2IV9A 1R4XA 4D7RA 5AN4A 3F0ZA 2OOXA 3TE5A 4MRQA 4DULA 1UT7A 1EUVA 3OH6A 3DPUA 1T6AA 4EAJA 1QNAA 2I5WA 1PZDA 3OC3C 3T4NA 3HS9A 1TUOA 1YQKA 1QTSA 4WX8A 1NGMA 1AISA 2JHNA 2FKFA 2DKAA 2QLVA 3OSEA 1NVPA 4EJZA 3TDHA 2PWWA 1WQAA 1PCMX
chains in the Genus database with same CATH topology
1VTOA 2YH5A 2IV8A 2JOIA 1KYFA 4B0AA 1QN8A 2O3OA 3KRMA 1QN5A 2NOHA 3IH7A 1YTFA 1QN7A 3F10A 2NOBA 5IYCP 2MJ7A 2VJ0A 3H1ZA 2NOLA 1EBMA 1M3QA 3OSTA 1LWVA 2NOEA 1QNEA 1KO9A 1KY6A 4ROEB 1QN6A 2XHIA 2Z8UA 1YQLA 2G30A 4PY5A 1N39A 1QN3A 1E42A 5IYBP 2NOZA 1N3CA 2HZSA 3HS8A 1YQMA 3I0XA 3SNSA 1KYUA 1YTBA 1QN9A 4I8OA 1QN4A 4RODB 4Q11A 3VN5A 2LAEA 4WZSD 3RPJA 1VOLB 2D0CA 3DPTA 2NOFA 2MZ8A 1QTPA 1C9BB 1TGHA 4ROCB 3ASMA 1M3HA 2D0AA 1B9KA 1D3UA 3EIKA 1TBAB 1W80A 1MP9A 1LWWA 5IYDP 1KY7A 2D0BA 3ULXA 3N89A 3OCIA 2NOIA 2FGTA 1PCZA 1N3AA 1CDWA 1RM1A 4EJYA 1TBPA 1LWYA 2HZMA 1KYDA 1YQRA 3KTUA 1VOKA 1QNCA 3I0WA 1NH2A 1QNBA 1FN7A 4TPSA 1JFIC 1UT4A 1VTLE 1HU0A 3OSMA 2IV9A 1R4XA 5AN4A 3F0ZA 4DULA 1UT7A 3DPUA 1QNAA 2I5WA 1PZDA 3OC3C 3HS9A 1YQKA 1QTSA 1NGMA 1AISA 1NVPA 4EJZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QTP A;  1VTO A;  1C9B B;  1VOK A;  1QNC A;  1TGH A;  2IV8 A;  1NH2 A;  2G30 A;  4ROC B;  3ASM A;  1QNB A;  4PY5 A;  1KYF A;  2D0A A;  4B0A A;  1B9K A;  1JFI C;  1QN8 A;  1QN3 A;  1QN5 A;  1D3U A;  1E42 A;  1VTL E;  5IYB P;  3HS8 A;  3EIK A;  1YTF A;  2IV9 A;  1TBA B;  1QN7 A;  1W80 A;  1MP9 A;  1R4X A;  5IYD P;  1KY7 A;  1KYU A;  2D0B A;  1YTB A;  5IYC P;  2MJ7 A;  2VJ0 A;  1QN9 A;  3H1Z A;  1QNA A;  1QN4 A;  3OCI A;  4ROD B;  1PZD A;  1PCZ A;  3OC3 C;  3HS9 A;  3VN5 A;  1RM1 A;  1QTS A;  1NGM A;  1AIS A;  4WZS D;  1CDW A;  1QNE A;  1KY6 A;  1NVP A;  4ROE B;  2D0C A;  1VOL B;  1TBP A;  1QN6 A;  1KYD A;  2Z8U A; 
#chains in the Genus database with same CATH topology
 1VTO A;  1DIZ A;  1PVS A;  2YH5 A;  3CVS A;  2IV8 A;  2NLV A;  2R5X A;  2JOI A;  3OH9 A;  1KYF A;  4B0A A;  2QR1 A;  2O3O A;  3KRM A;  1QN5 A;  1QN8 A;  2NOH A;  3IH7 A;  2DKD A;  4WXA A;  2QRC A;  1YTF A;  3CWA A;  1QN7 A;  2HKP A;  1KFI A;  1C47 A;  3BKQ X;  3F10 A;  4CFF A;  2NOB A;  5HSH A;  3CWS A;  1K2Y X;  2NWV A;  5F9C A;  2MJ7 A;  2VJ0 A;  5IYC P;  3D7Q A;  3H1Z A;  1J3M A;  3EAY A;  2NOL A;  1EBM A;  1LXT A;  2Z0F A;  3OST A;  1M3Q A;  1LWV A;  2NOE A;  2F7L A;  1KO9 A;  1QNE A;  1KY6 A;  4ROE B;  1QN6 A;  3C04 A;  2XHI A;  5BMP A;  2Z8U A;  2OOY A;  3NA5 A;  2HL9 A;  1XSZ A;  1WJW A;  2HL8 A;  1YQL A;  4QG5 A;  2G30 A;  5JMV D;  4PY5 A;  3RSM A;  2JPI A;  1N39 A;  4C7P A;  1QN3 A;  2QRD A;  1E42 A;  5JN5 A;  5IYB P;  2NOZ A;  3ENO C;  1N3C A;  2HZS A;  3HS8 A;  1YQM A;  3I0X A;  3SNS A;  2ZFD B;  4BJU A;  1KYU A;  1KFQ A;  1YTB A;  4EAI A;  1QN9 A;  1M5Q 1;  2V92 A;  4I8O A;  1PCJ X;  1QN4 A;  4ROD B;  2Y8L A;  4Q11 A;  3VN5 A;  1K35 A;  2LAE A;  4WZS D;  3RPJ A;  4EAK A;  1VOL B;  2D0C A;  1P5D X;  3DPT A;  1C4G A;  2NOF A;  2MZ8 A;  2JHJ A;  1QTP A;  1C9B B;  3UW2 A;  1Q9U A;  1TGH A;  3OLP A;  4EAL A;  4ROC B;  3ASM A;  2EHB D;  1M3H A;  2H5A X;  2D0A A;  1VKL A;  1V5S A;  1B9K A;  5EPC A;  3CWT A;  1D3U A;  3EIK A;  2QRE A;  5BMN A;  1TBA B;  1W80 A;  1MP9 A;  1LWW A;  3CWU A;  5IYD P;  1KY7 A;  2D0B A;  2DKC A;  3ULX A;  5KL0 A;  4EAG A;  3N89 A;  2FUV A;  1MPG A;  3OCI A;  2NOI A;  2FGT A;  1PCZ A;  1UL7 A;  1N3A A;  3PDK A;  1CDW A;  1RM1 A;  2YA3 A;  1JDY A;  3ENC A;  3CVT A;  4EJY A;  1P5G X;  2Y8Q A;  1TBP A;  3OGD A;  3PMG A;  4D7Q A;  2HZM A;  1KYD A;  2FKM X;  4HJH A;  2V8Q A;  1YQR A;  1LWY A;  3KTU A;  1VOK A;  2H4L X;  1QNC A;  3I0W A;  1NH2 A;  4IL8 A;  1QNB A;  2V9J A;  4TPS A;  1FN7 A;  1JFI C;  1UT4 A;  1VTL E;  2NVM A;  1HU0 A;  3CW7 A;  3D4V A;  3OSM A;  3I3W A;  2IV9 A;  1R4X A;  4D7R A;  5AN4 A;  3F0Z A;  2OOX A;  3TE5 A;  4MRQ A;  4DUL A;  1UT7 A;  1EUV A;  3OH6 A;  3DPU A;  1T6A A;  4EAJ A;  1QNA A;  2I5W A;  1PZD A;  3OC3 C;  3T4N A;  3HS9 A;  1TUO A;  1YQK A;  1QTS A;  4WX8 A;  1NGM A;  1AIS A;  2JHN A;  2FKF A;  2DKA A;  2QLV A;  3OSE A;  1NVP A;  4EJZ A;  3TDH A;  2PWW A;  1WQA A;  1PCM X; 
#chains in the Genus database with same CATH homology
 1VTO A;  2YH5 A;  2IV8 A;  2JOI A;  1KYF A;  4B0A A;  1QN8 A;  2O3O A;  3KRM A;  1QN5 A;  2NOH A;  3IH7 A;  1YTF A;  1QN7 A;  3F10 A;  2NOB A;  5IYC P;  2MJ7 A;  2VJ0 A;  3H1Z A;  2NOL A;  1EBM A;  1M3Q A;  3OST A;  1LWV A;  2NOE A;  1QNE A;  1KO9 A;  1KY6 A;  4ROE B;  1QN6 A;  2XHI A;  2Z8U A;  1YQL A;  2G30 A;  4PY5 A;  1N39 A;  1QN3 A;  1E42 A;  5IYB P;  2NOZ A;  1N3C A;  2HZS A;  3HS8 A;  1YQM A;  3I0X A;  3SNS A;  1KYU A;  1YTB A;  1QN9 A;  4I8O A;  1QN4 A;  4ROD B;  4Q11 A;  3VN5 A;  2LAE A;  4WZS D;  3RPJ A;  1VOL B;  2D0C A;  3DPT A;  2NOF A;  2MZ8 A;  1QTP A;  1C9B B;  1TGH A;  4ROC B;  3ASM A;  1M3H A;  2D0A A;  1B9K A;  1D3U A;  3EIK A;  1TBA B;  1W80 A;  1MP9 A;  1LWW A;  5IYD P;  1KY7 A;  2D0B A;  3ULX A;  3N89 A;  3OCI A;  2NOI A;  2FGT A;  1PCZ A;  1N3A A;  1CDW A;  1RM1 A;  4EJY A;  1TBP A;  1LWY A;  2HZM A;  1KYD A;  1YQR A;  3KTU A;  1VOK A;  1QNC A;  3I0W A;  1NH2 A;  1QNB A;  1FN7 A;  4TPS A;  1JFI C;  1UT4 A;  1VTL E;  1HU0 A;  3OSM A;  2IV9 A;  1R4X A;  5AN4 A;  3F0Z A;  4DUL A;  1UT7 A;  3DPU A;  1QNA A;  2I5W A;  1PZD A;  3OC3 C;  3HS9 A;  1YQK A;  1QTS A;  1NGM A;  1AIS A;  1NVP A;  4EJZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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