1ZEBA

X-ray structure of alkaline phosphatase from human placenta in complex with 5'-amp
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
Knots found
sequence length
480
structure length
479
Chain Sequence
IIPVEEENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPEIPLAMDRFPYVALSKTYNVDKHVPDGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISNMDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAKRQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRDSTLDPSLMEMTEAALRLLSRNPRGFFLFVEGGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKAYTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFAACLEPYTACDLAPPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Alkaline phosphatase
publication title Structural Studies of Human Placental Alkaline Phosphatase in Complex with Functional Ligands.
pubmed doi rcsb
total genus 173
structure length 479
sequence length 480
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2005-04-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1zebA00
3LXQA 1EW2A 1HJKA 4ZG9A 5L0KA 1ED8A 2GLQA 4ZG6A 1ALJA 2VQRA 5LIAA 2GSOA 4NWJA 3NKPA 4TN0A 1URAA 3M8ZA 4GTYA 2IUCA 4GTWA 3M8YA 1ZEBA 3TX0A 2ANHA 5LRMA 1KH4A 3Q3QA 4ZGAA 3E2DA 1KHKA 1ALIA 3IDDA 1Y6VA 5HRTA 3CMRA 3B5QA 1ED9A 1AUKA 3M7VA 2W5WA 4UPLA 4LREA 4FDJA 4UPKA 2RH6A 3A52A 1AJCA 1AJDA 1ALHA 5GRRA 4CXKA 5L0BA 2W5XA 3M8WA 3NVLA 3SZZA 2W8DA 3T01A 1URBA 3MK0A 3KD8A 4LRAA 5INHA 2W5VA 4UOPA 5KXAA 1KHNA 4QAXA 1AJBA 2GSUA 3T02A 1EW8A 2GA3A 2IUCB 4CXUA 1EJJA 4UORA 1K7HA 2W5TA 2ZKTA 5K4PA 1EW9A 2G9YA 3DYCA 3WAWA 3NKMA 1P49A 5LQQA 5DLTA 5TJ3A 4LRFA 3UNYA 4LR2A 2W5QA 5LRNA 5L0EA 1E3CP 1EI6A 2XRGA 1ANIA 1KHJA 1O98A 2W5RA 3NKRA 5DLVA 2W8SA 1HDHA 1ZEDA 1SHNA 5DLWA 4NWXA 3WAVA 2D1GA 4FDIA 5C66A 3TG0A 4CXSA 3BDFA 4LQYA 1B8JA 1N2LA 3WBHA 1KH7A 3IGZB 3IGYB 1SHQA 4LR9A 3UN2A 3BDHA 3NKQA 4UPIA 4LRCA 2GSNA 4YR1A 4UOOA 4MY4A 3OT9A 3MK2A 4KAVA 2XR9A 4MIVA 4LRDA 3ED4A 3NKOA 1E2SP 1E1ZP 1E33P 5EGEA 4KM4A 4KAYA 3WAXA 1N2KA 3DPCA 1ANJA 1HQAA 4LR7A 4LRBA 2X98A 5EGHA 1KH9A 3T00A 4CYRA 1ZEFA 3SZYA 5GOVA 1FSUA 1ELXA 1ELZA 3UN5A 2IFYA 4B56A 1ELYA 4CYSA 1KH5A 3MK1A 4MHXA 4LR8A 4UPHA 1KHLA 3BDGA 5AJ9A 2W5SA 3UN3A 4KJDA 2QZUA 5IJQA 1ALKA 1Y7AA 1O99A 3BDGB 1AJAA 3WAYA 3NKNA 3TWZA 3UO0A 4KJGA 4ZG7A 1EQJA 4N7TA 5IJSA 4GTZA 4GTXA
chains in the Genus database with same CATH superfamily
3LXQA 1EW2A 1HJKA 4ZG9A 5L0KA 1ED8A 2GLQA 4ZG6A 1ALJA 2VQRA 5LIAA 2GSOA 4NWJA 3NKPA 4TN0A 1URAA 3M8ZA 4GTYA 2IUCA 4GTWA 3M8YA 1ZEBA 3TX0A 2ANHA 5LRMA 1KH4A 3Q3QA 4ZGAA 3E2DA 1KHKA 1ALIA 3IDDA 1Y6VA 5HRTA 3CMRA 3B5QA 1ED9A 1AUKA 3M7VA 2W5WA 4UPLA 4LREA 4FDJA 4UPKA 2RH6A 3A52A 1AJCA 1AJDA 1ALHA 5GRRA 4CXKA 5L0BA 2W5XA 3M8WA 3NVLA 3SZZA 2W8DA 3T01A 1URBA 3MK0A 3KD8A 4LRAA 5INHA 2W5VA 4UOPA 5KXAA 1KHNA 4QAXA 1AJBA 2GSUA 3T02A 1EW8A 2GA3A 2IUCB 4CXUA 1EJJA 4UORA 1K7HA 2W5TA 2ZKTA 5K4PA 1EW9A 2G9YA 3DYCA 3WAWA 3NKMA 1P49A 5LQQA 5DLTA 5TJ3A 4LRFA 3UNYA 4LR2A 2W5QA 5LRNA 5L0EA 1E3CP 1EI6A 2XRGA 1ANIA 1KHJA 1O98A 2W5RA 3NKRA 5DLVA 2W8SA 1HDHA 1ZEDA 1SHNA 5DLWA 4NWXA 3WAVA 2D1GA 4FDIA 5C66A 3TG0A 4CXSA 3BDFA 4LQYA 1B8JA 1N2LA 3WBHA 1KH7A 3IGZB 3IGYB 1SHQA 4LR9A 3UN2A 3BDHA 3NKQA 4UPIA 4LRCA 2GSNA 4YR1A 4UOOA 4MY4A 3OT9A 3MK2A 4KAVA 2XR9A 4MIVA 4LRDA 3ED4A 3NKOA 1E2SP 1E1ZP 1E33P 5EGEA 4KM4A 4KAYA 3WAXA 1N2KA 3DPCA 1ANJA 1HQAA 4LR7A 4LRBA 2X98A 5EGHA 1KH9A 3T00A 4CYRA 1ZEFA 3SZYA 5GOVA 1FSUA 1ELXA 1ELZA 3UN5A 2IFYA 4B56A 1ELYA 4CYSA 1KH5A 3MK1A 4MHXA 4LR8A 4UPHA 1KHLA 3BDGA 5AJ9A 2W5SA 3UN3A 4KJDA 2QZUA 5IJQA 1ALKA 1Y7AA 1O99A 3BDGB 1AJAA 3WAYA 3NKNA 3TWZA 3UO0A 4KJGA 4ZG7A 1EQJA 4N7TA 5IJSA 4GTZA 4GTXA
chains in the Genus database with same CATH topology
3LXQA 1EW2A 1HJKA 4ZG9A 5L0KA 1ED8A 2GLQA 4ZG6A 1ALJA 2VQRA 5LIAA 2GSOA 4NWJA 3NKPA 4TN0A 1URAA 3M8ZA 4GTYA 2IUCA 4GTWA 3M8YA 1ZEBA 3TX0A 2ANHA 5LRMA 1KH4A 3Q3QA 4ZGAA 3E2DA 1KHKA 1ALIA 3IDDA 1Y6VA 5HRTA 3CMRA 3B5QA 1ED9A 1AUKA 3M7VA 2W5WA 4UPLA 4LREA 4FDJA 4UPKA 2RH6A 3A52A 1AJCA 1AJDA 1ALHA 5GRRA 4CXKA 5L0BA 2W5XA 3M8WA 3NVLA 3SZZA 2W8DA 3T01A 1URBA 3MK0A 3KD8A 4LRAA 5INHA 2W5VA 4UOPA 5KXAA 1KHNA 4QAXA 1AJBA 2GSUA 3T02A 1EW8A 2GA3A 2IUCB 4CXUA 1EJJA 4UORA 1K7HA 2W5TA 2ZKTA 5K4PA 1EW9A 2G9YA 3DYCA 3WAWA 3NKMA 1P49A 5LQQA 5DLTA 5TJ3A 4LRFA 3UNYA 4LR2A 2W5QA 5LRNA 5L0EA 1E3CP 1EI6A 2XRGA 1ANIA 1KHJA 1O98A 2W5RA 3NKRA 5DLVA 2W8SA 1HDHA 1ZEDA 1SHNA 5DLWA 4NWXA 3WAVA 2D1GA 4FDIA 5C66A 3TG0A 4CXSA 3BDFA 4LQYA 1B8JA 1N2LA 3WBHA 1KH7A 3IGZB 3IGYB 1SHQA 4LR9A 3UN2A 3BDHA 3NKQA 4UPIA 4LRCA 2GSNA 4YR1A 4UOOA 4MY4A 3OT9A 3MK2A 4KAVA 2XR9A 4MIVA 4LRDA 3ED4A 3NKOA 1E2SP 1E1ZP 1E33P 5EGEA 4KM4A 4KAYA 3WAXA 1N2KA 3DPCA 1ANJA 1HQAA 4LR7A 4LRBA 2X98A 5EGHA 1KH9A 3T00A 4CYRA 1ZEFA 3SZYA 5GOVA 1FSUA 1ELXA 1ELZA 3UN5A 2IFYA 4B56A 1ELYA 4CYSA 1KH5A 3MK1A 4MHXA 4LR8A 4UPHA 1KHLA 3BDGA 5AJ9A 2W5SA 3UN3A 4KJDA 2QZUA 5IJQA 1ALKA 1Y7AA 1O99A 3BDGB 1AJAA 3WAYA 3NKNA 3TWZA 3UO0A 4KJGA 4ZG7A 1EQJA 4N7TA 5IJSA 4GTZA 4GTXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LXQ A;  1EW2 A;  1HJK A;  4ZG9 A;  5L0K A;  1ED8 A;  2GLQ A;  4ZG6 A;  1ALJ A;  2VQR A;  5LIA A;  2GSO A;  4NWJ A;  3NKP A;  4TN0 A;  1URA A;  3M8Z A;  4GTY A;  2IUC A;  4GTW A;  3M8Y A;  1ZEB A;  3TX0 A;  2ANH A;  5LRM A;  1KH4 A;  3Q3Q A;  4ZGA A;  3E2D A;  1KHK A;  1ALI A;  3IDD A;  1Y6V A;  5HRT A;  3CMR A;  3B5Q A;  1ED9 A;  1AUK A;  3M7V A;  2W5W A;  4UPL A;  4LRE A;  4FDJ A;  4UPK A;  2RH6 A;  3A52 A;  1AJC A;  1AJD A;  1ALH A;  5GRR A;  4CXK A;  5L0B A;  2W5X A;  3M8W A;  3NVL A;  3SZZ A;  2W8D A;  3T01 A;  1URB A;  3MK0 A;  3KD8 A;  4LRA A;  5INH A;  2W5V A;  4UOP A;  5KXA A;  1KHN A;  4QAX A;  1AJB A;  2GSU A;  3T02 A;  1EW8 A;  2GA3 A;  2IUC B;  4CXU A;  1EJJ A;  4UOR A;  1K7H A;  2W5T A;  2ZKT A;  5K4P A;  1EW9 A;  2G9Y A;  3DYC A;  3WAW A;  3NKM A;  1P49 A;  5LQQ A;  5DLT A;  5TJ3 A;  4LRF A;  3UNY A;  4LR2 A;  2W5Q A;  5LRN A;  5L0E A;  1E3C P;  1EI6 A;  2XRG A;  1ANI A;  1KHJ A;  1O98 A;  2W5R A;  3NKR A;  5DLV A;  2W8S A;  1HDH A;  1ZED A;  1SHN A;  5DLW A;  4NWX A;  3WAV A;  2D1G A;  4FDI A;  5C66 A;  3TG0 A;  4CXS A;  3BDF A;  4LQY A;  1B8J A;  1N2L A;  3WBH A;  1KH7 A;  3IGZ B;  3IGY B;  1SHQ A;  4LR9 A;  3UN2 A;  3BDH A;  3NKQ A;  4UPI A;  4LRC A;  2GSN A;  4YR1 A;  4UOO A;  4MY4 A;  3OT9 A;  3MK2 A;  4KAV A;  2XR9 A;  4MIV A;  4LRD A;  3ED4 A;  3NKO A;  1E2S P;  1E1Z P;  1E33 P;  5EGE A;  4KM4 A;  4KAY A;  3WAX A;  1N2K A;  3DPC A;  1ANJ A;  1HQA A;  4LR7 A;  4LRB A;  2X98 A;  5EGH A;  1KH9 A;  3T00 A;  4CYR A;  1ZEF A;  3SZY A;  5GOV A;  1FSU A;  1ELX A;  1ELZ A;  3UN5 A;  2IFY A;  4B56 A;  1ELY A;  4CYS A;  1KH5 A;  3MK1 A;  4MHX A;  4LR8 A;  4UPH A;  1KHL A;  3BDG A;  5AJ9 A;  2W5S A;  3UN3 A;  4KJD A;  2QZU A;  5IJQ A;  1ALK A;  1Y7A A;  1O99 A;  3BDG B;  1AJA A;  3WAY A;  3NKN A;  3TWZ A;  3UO0 A;  4KJG A;  4ZG7 A;  1EQJ A;  4N7T A;  5IJS A;  4GTZ A;  4GTX A; 
#chains in the Genus database with same CATH topology
 3LXQ A;  1EW2 A;  1HJK A;  4ZG9 A;  5L0K A;  1ED8 A;  2GLQ A;  4ZG6 A;  1ALJ A;  2VQR A;  5LIA A;  2GSO A;  4NWJ A;  3NKP A;  4TN0 A;  1URA A;  3M8Z A;  4GTY A;  2IUC A;  4GTW A;  3M8Y A;  1ZEB A;  3TX0 A;  2ANH A;  5LRM A;  1KH4 A;  3Q3Q A;  4ZGA A;  3E2D A;  1KHK A;  1ALI A;  3IDD A;  1Y6V A;  5HRT A;  3CMR A;  3B5Q A;  1ED9 A;  1AUK A;  3M7V A;  2W5W A;  4UPL A;  4LRE A;  4FDJ A;  4UPK A;  2RH6 A;  3A52 A;  1AJC A;  1AJD A;  1ALH A;  5GRR A;  4CXK A;  5L0B A;  2W5X A;  3M8W A;  3NVL A;  3SZZ A;  2W8D A;  3T01 A;  1URB A;  3MK0 A;  3KD8 A;  4LRA A;  5INH A;  2W5V A;  4UOP A;  5KXA A;  1KHN A;  4QAX A;  1AJB A;  2GSU A;  3T02 A;  1EW8 A;  2GA3 A;  2IUC B;  4CXU A;  1EJJ A;  4UOR A;  1K7H A;  2W5T A;  2ZKT A;  5K4P A;  1EW9 A;  2G9Y A;  3DYC A;  3WAW A;  3NKM A;  1P49 A;  5LQQ A;  5DLT A;  5TJ3 A;  4LRF A;  3UNY A;  4LR2 A;  2W5Q A;  5LRN A;  5L0E A;  1E3C P;  1EI6 A;  2XRG A;  1ANI A;  1KHJ A;  1O98 A;  2W5R A;  3NKR A;  5DLV A;  2W8S A;  1HDH A;  1ZED A;  1SHN A;  5DLW A;  4NWX A;  3WAV A;  2D1G A;  4FDI A;  5C66 A;  3TG0 A;  4CXS A;  3BDF A;  4LQY A;  1B8J A;  1N2L A;  3WBH A;  1KH7 A;  3IGZ B;  3IGY B;  1SHQ A;  4LR9 A;  3UN2 A;  3BDH A;  3NKQ A;  4UPI A;  4LRC A;  2GSN A;  4YR1 A;  4UOO A;  4MY4 A;  3OT9 A;  3MK2 A;  4KAV A;  2XR9 A;  4MIV A;  4LRD A;  3ED4 A;  3NKO A;  1E2S P;  1E1Z P;  1E33 P;  5EGE A;  4KM4 A;  4KAY A;  3WAX A;  1N2K A;  3DPC A;  1ANJ A;  1HQA A;  4LR7 A;  4LRB A;  2X98 A;  5EGH A;  1KH9 A;  3T00 A;  4CYR A;  1ZEF A;  3SZY A;  5GOV A;  1FSU A;  1ELX A;  1ELZ A;  3UN5 A;  2IFY A;  4B56 A;  1ELY A;  4CYS A;  1KH5 A;  3MK1 A;  4MHX A;  4LR8 A;  4UPH A;  1KHL A;  3BDG A;  5AJ9 A;  2W5S A;  3UN3 A;  4KJD A;  2QZU A;  5IJQ A;  1ALK A;  1Y7A A;  1O99 A;  3BDG B;  1AJA A;  3WAY A;  3NKN A;  3TWZ A;  3UO0 A;  4KJG A;  4ZG7 A;  1EQJ A;  4N7T A;  5IJS A;  4GTZ A;  4GTX A; 
#chains in the Genus database with same CATH homology
 3LXQ A;  1EW2 A;  1HJK A;  4ZG9 A;  5L0K A;  1ED8 A;  2GLQ A;  4ZG6 A;  1ALJ A;  2VQR A;  5LIA A;  2GSO A;  4NWJ A;  3NKP A;  4TN0 A;  1URA A;  3M8Z A;  4GTY A;  2IUC A;  4GTW A;  3M8Y A;  1ZEB A;  3TX0 A;  2ANH A;  5LRM A;  1KH4 A;  3Q3Q A;  4ZGA A;  3E2D A;  1KHK A;  1ALI A;  3IDD A;  1Y6V A;  5HRT A;  3CMR A;  3B5Q A;  1ED9 A;  1AUK A;  3M7V A;  2W5W A;  4UPL A;  4LRE A;  4FDJ A;  4UPK A;  2RH6 A;  3A52 A;  1AJC A;  1AJD A;  1ALH A;  5GRR A;  4CXK A;  5L0B A;  2W5X A;  3M8W A;  3NVL A;  3SZZ A;  2W8D A;  3T01 A;  1URB A;  3MK0 A;  3KD8 A;  4LRA A;  5INH A;  2W5V A;  4UOP A;  5KXA A;  1KHN A;  4QAX A;  1AJB A;  2GSU A;  3T02 A;  1EW8 A;  2GA3 A;  2IUC B;  4CXU A;  1EJJ A;  4UOR A;  1K7H A;  2W5T A;  2ZKT A;  5K4P A;  1EW9 A;  2G9Y A;  3DYC A;  3WAW A;  3NKM A;  1P49 A;  5LQQ A;  5DLT A;  5TJ3 A;  4LRF A;  3UNY A;  4LR2 A;  2W5Q A;  5LRN A;  5L0E A;  1E3C P;  1EI6 A;  2XRG A;  1ANI A;  1KHJ A;  1O98 A;  2W5R A;  3NKR A;  5DLV A;  2W8S A;  1HDH A;  1ZED A;  1SHN A;  5DLW A;  4NWX A;  3WAV A;  2D1G A;  4FDI A;  5C66 A;  3TG0 A;  4CXS A;  3BDF A;  4LQY A;  1B8J A;  1N2L A;  3WBH A;  1KH7 A;  3IGZ B;  3IGY B;  1SHQ A;  4LR9 A;  3UN2 A;  3BDH A;  3NKQ A;  4UPI A;  4LRC A;  2GSN A;  4YR1 A;  4UOO A;  4MY4 A;  3OT9 A;  3MK2 A;  4KAV A;  2XR9 A;  4MIV A;  4LRD A;  3ED4 A;  3NKO A;  1E2S P;  1E1Z P;  1E33 P;  5EGE A;  4KM4 A;  4KAY A;  3WAX A;  1N2K A;  3DPC A;  1ANJ A;  1HQA A;  4LR7 A;  4LRB A;  2X98 A;  5EGH A;  1KH9 A;  3T00 A;  4CYR A;  1ZEF A;  3SZY A;  5GOV A;  1FSU A;  1ELX A;  1ELZ A;  3UN5 A;  2IFY A;  4B56 A;  1ELY A;  4CYS A;  1KH5 A;  3MK1 A;  4MHX A;  4LR8 A;  4UPH A;  1KHL A;  3BDG A;  5AJ9 A;  2W5S A;  3UN3 A;  4KJD A;  2QZU A;  5IJQ A;  1ALK A;  1Y7A A;  1O99 A;  3BDG B;  1AJA A;  3WAY A;  3NKN A;  3TWZ A;  3UO0 A;  4KJG A;  4ZG7 A;  1EQJ A;  4N7T A;  5IJS A;  4GTZ A;  4GTX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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