2A02A

Solution nmr structure of the periplasmic signaling domain of the outer membrane iron transporter pupa from pseudomonas putida.
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
82
structure length
82
Chain Sequence
SQEWTLDIPAQSMNSALQALAKQTDTQLLYSPEDIGGLRSSALKGRHDLQSSLRILLQGTGLRYQIDGNTVTVTASAAAKDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein, metal transport
molecule keywords Ferric-pseudobactin 358 receptor
publication title Signal transduction pathway of TonB-dependent transporters.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 16
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2005-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07660 STN Secretin and TonB N terminus short domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.55.50.30 Alpha Beta 3-Layer(bab) Sandwich Phage tail protein beta-alpha-beta fold Phage tail protein beta-alpha-beta fold 2a02A01
2W6TA 4JTMA 2D1UA 1ZZVA 2W6UA 2W75A 4M0NA 4M0HA 2IAHA 2W77A 2O5PA 4G08A 3EZJA 3GR5A 2W78A 4AR0A 2M5JA 2A02A 2W76A 2W16A
chains in the Genus database with same CATH superfamily
2W6TA 3CDDA 1WRUA 2P5ZX 4JTMA 3GS9A 2D1UA 1ZZVA 2W6UA 2W75A 1WTHD 4M0NA 4M0HA 2IAHA 4MTKA 2W77A 2L4WA 2O5PA 4G08A 2Z6BD 3GR5A 3OV5A 1K28D 2X531 4UHVA 2W16A 2W78A 2WZPR 4AR0A 3D37A 3ADYA 2M5JA 2A02A 2W76A 3EZJA
chains in the Genus database with same CATH topology
2W6TA 4JTMA 3GS9A 2D1UA 1ZZVA 2W6UA 2W75A 1WTHD 4M0NA 4M0HA 2IAHA 2W77A 2L4WA 2O5PA 4G08A 2Z6BD 3GR5A 3OV5A 1K28D 2X531 2W16A 2W78A 2WZPR 4AR0A 3ADYA 2M5JA 2A02A 2W76A 3EZJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W6T A;  4JTM A;  2D1U A;  1ZZV A;  2W6U A;  2W75 A;  4M0N A;  4M0H A;  2IAH A;  2W77 A;  2O5P A;  4G08 A;  3EZJ A;  3GR5 A;  2W78 A;  4AR0 A;  2M5J A;  2A02 A;  2W76 A;  2W16 A; 
#chains in the Genus database with same CATH topology
 2W6T A;  3CDD A;  1WRU A;  2P5Z X;  4JTM A;  3GS9 A;  2D1U A;  1ZZV A;  2W6U A;  2W75 A;  1WTH D;  4M0N A;  4M0H A;  2IAH A;  4MTK A;  2W77 A;  2L4W A;  2O5P A;  4G08 A;  2Z6B D;  3GR5 A;  3OV5 A;  1K28 D;  2X53 1;  4UHV A;  2W16 A;  2W78 A;  2WZP R;  4AR0 A;  3D37 A;  3ADY A;  2M5J A;  2A02 A;  2W76 A;  3EZJ A; 
#chains in the Genus database with same CATH homology
 2W6T A;  4JTM A;  3GS9 A;  2D1U A;  1ZZV A;  2W6U A;  2W75 A;  1WTH D;  4M0N A;  4M0H A;  2IAH A;  2W77 A;  2L4W A;  2O5P A;  4G08 A;  2Z6B D;  3GR5 A;  3OV5 A;  1K28 D;  2X53 1;  2W16 A;  2W78 A;  2WZP R;  4AR0 A;  3ADY A;  2M5J A;  2A02 A;  2W76 A;  3EZJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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