2A2BA

Curvacin a
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
41
structure length
41
Chain Sequence
ARSYGNGVYCNNKKCWVNRGEATQSIIGGMISGWASGLAGM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antibiotic
molecule keywords Bacteriocin curvacin A
publication title Three-dimensional structure in lipid micelles of the pediocin-like antimicrobial peptide curvacin A
pubmed doi rcsb
total genus 7
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 2005-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01721 Bacteriocin_II Class II bacteriocin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.30 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Arc Repressor Mutant 2a2bA00
2A2BA 1OG7A 1OHNA
chains in the Genus database with same CATH superfamily
4D8JA 2UUTA 2WK4A 3UQSA 2CADA 4QPXA 3NNEA 2BJ8A 2K9IA 2K6LA 3LJPA 3FMTA 1SH2A 2WVCA 2H1OE 3UPFA 3G5OA 2CKWA 4O4RA 3IR7A 1OHNA 2ADLA 2H3AA 2BNZA 4LRVA 1Q16A 1MNTA 1PARA 3QIDA 2HZVA 2JXHA 2JXGA 1P94A 3H5YA 3VW4A 2K29A 2WVBA 1Q5VA 3NAHA 2AN7A 4FXEA 3H87C 1ARRA 3BSOA 2CPGA 2A2BA 2WVEA 3VEAA 2CAXA 1X93A 1SH3A 1QTGA 2HZAA 3BSNA 1MYLA 2B43A 1B28A 3FT7A 1BAZA 2BJ9A 3H5XA 2BSQE 2WVFA 1SH0A 3QOQA 2KELA 3SFUA 1BDVA 1BDTA 3UR0A 4NRUA 1SIWA 2BNWA 4LQ9A 4AAIA 1MYKA 2K1OA 2BA3A 3GXQA 2Q2KA 4NRTA 2JXIA 3VEBA 1ARQA 2K5JA 2WVDA 2BJ3A 2CAJA 2JBVA 3NAIA 2RBFA 2BJ7A 3SFGA 3LGHA 1EA4A 1IRQA 1U9PA 3OD2A 2UUWA 4ME7E 2KKEA 4MJWA 2BJ1A 3NO7A 1NLAA 1OG7A 2AY0A 4LQ3A 2CA9A 2GPEA 2KOEA 1B01A 4HV0A
chains in the Genus database with same CATH topology
2UUTA 2WK4A 3QIDA 3UQSA 3H5XA 2JBVA 3NAIA 4QPXA 1SH0A 3NNEA 3SFGA 3H5YA 3SFUA 3UR0A 4NRUA 3NAHA 2AN7A 4LRVA 3LJPA 2UUWA 1SIWA 2KKEA 4MJWA 1SH2A 3NO7A 3BSOA 3UPFA 2A2BA 4LQ9A 1OG7A 3G5OA 4AAIA 2CKWA 4O4RA 4LQ3A 1SH3A 3IR7A 1OHNA 2ADLA 2Q2KA 4NRTA 2H3AA 2KOEA 3BSNA 2B43A 1Q16A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A2B A;  1OG7 A;  1OHN A; 
#chains in the Genus database with same CATH topology
 4D8J A;  2UUT A;  2WK4 A;  3UQS A;  2CAD A;  4QPX A;  3NNE A;  2BJ8 A;  2K9I A;  2K6L A;  3LJP A;  3FMT A;  1SH2 A;  2WVC A;  2H1O E;  3UPF A;  3G5O A;  2CKW A;  4O4R A;  3IR7 A;  1OHN A;  2ADL A;  2H3A A;  2BNZ A;  4LRV A;  1Q16 A;  1MNT A;  1PAR A;  3QID A;  2HZV A;  2JXH A;  2JXG A;  1P94 A;  3H5Y A;  3VW4 A;  2K29 A;  2WVB A;  1Q5V A;  3NAH A;  2AN7 A;  4FXE A;  3H87 C;  1ARR A;  3BSO A;  2CPG A;  2A2B A;  2WVE A;  3VEA A;  2CAX A;  1X93 A;  1SH3 A;  1QTG A;  2HZA A;  3BSN A;  1MYL A;  2B43 A;  1B28 A;  3FT7 A;  1BAZ A;  2BJ9 A;  3H5X A;  2BSQ E;  2WVF A;  1SH0 A;  3QOQ A;  2KEL A;  3SFU A;  1BDV A;  1BDT A;  3UR0 A;  4NRU A;  1SIW A;  2BNW A;  4LQ9 A;  4AAI A;  1MYK A;  2K1O A;  2BA3 A;  3GXQ A;  2Q2K A;  4NRT A;  2JXI A;  3VEB A;  1ARQ A;  2K5J A;  2WVD A;  2BJ3 A;  2CAJ A;  2JBV A;  3NAI A;  2RBF A;  2BJ7 A;  3SFG A;  3LGH A;  1EA4 A;  1IRQ A;  1U9P A;  3OD2 A;  2UUW A;  4ME7 E;  2KKE A;  4MJW A;  2BJ1 A;  3NO7 A;  1NLA A;  1OG7 A;  2AY0 A;  4LQ3 A;  2CA9 A;  2GPE A;  2KOE A;  1B01 A;  4HV0 A; 
#chains in the Genus database with same CATH homology
 2UUT A;  2WK4 A;  3QID A;  3UQS A;  3H5X A;  2JBV A;  3NAI A;  4QPX A;  1SH0 A;  3NNE A;  3SFG A;  3H5Y A;  3SFU A;  3UR0 A;  4NRU A;  3NAH A;  2AN7 A;  4LRV A;  3LJP A;  2UUW A;  1SIW A;  2KKE A;  4MJW A;  1SH2 A;  3NO7 A;  3BSO A;  3UPF A;  2A2B A;  4LQ9 A;  1OG7 A;  3G5O A;  4AAI A;  2CKW A;  4O4R A;  4LQ3 A;  1SH3 A;  3IR7 A;  1OHN A;  2ADL A;  2Q2K A;  4NRT A;  2H3A A;  2KOE A;  3BSN A;  2B43 A;  1Q16 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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