2A9EA

Helicobacter pylori catalase compound i
Total Genus 164
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
491
structure length
487
Chain Sequence
MVNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDVWDFWSNVPESLYQVTWVSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFHTMQGVKHLTNEEAAEIRKHDPDSNQRDLFDAIARGDYPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYTQDYPLEVGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKERLHDTIGESLAHVTHKEIVDKQLEHFKKADPKYAEGVKKALEKHQKMMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords KatA Catalase
publication title Helicobacter pylori catalase compound I
rcsb
source organism Helicobacter pylori
total genus 164
structure length 487
sequence length 491
chains with identical sequence B
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2005-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 2a9eA00
3TTVA 3P9RA 1QWLA 1QF7A 1M7SA 3ZJ5A 1GWHA 4B40A 3PQ3A 1GG9A 3PQ6A 4B5KA 4B7AA 1GGEA 2IUFA 1M85A 3HB6A 3PQ5A 3TTXA 3TTTA 1CF9A 2IQFA 4AJ9A 1P7ZA 4QORA 1HBZA 3EJ6A 4ENVA 1F4JA 1QWMA 1GGFA 4AULA 3P9PA 3PQ8A 3DY5A 4AUMA 1GWFA 1E93A 3PQ2A 1H7KA 4QOLA 4CABA 2CAHA 2A9EA 4BIMA 4ENSA 2XF2A 1P7YA 1P80A 1SI8A 1U5UA 1GWEA 4AUNA 4ENQA 3PQ4A 4BFLA 1H6NA 2J2MA 3TTWA 3P9SA 4ENTA 1NM0A 3TTUA 1MQFA 3PQ7A 4QONA 3ZJ4A 5BV2P 4ENRA 4E37A 2XQ1A 4QOOA 4ENUA 3P9QA 4B2YA 2CAGA 1P81A 1SY7A 3VU3A 4QOMA 4B31A 4ENWA 1GGJA 4QOPA 4AUEA 2ISAA 1A4EA 1GGHA 1IPHA 1QWSA 1GGKA 4QOQA 4ENPA
chains in the Genus database with same CATH superfamily
3TTVA 3P9RA 1QWLA 1QF7A 1M7SA 3RGSA 3ZJ5A 1GWHA 4B40A 3PQ3A 1GG9A 4B7GA 3PQ6A 4B5KA 4B7AA 1GGEA 2IUFA 3NWLA 1M85A 1DGGA 3HB6A 3PQ5A 3TTXA 1DGFA 3TTTA 1CF9A 2IQFA 1TH2A 4AJ9A 1P7ZA 4QORA 1HBZA 3EJ6A 3RE8A 4ENVA 1F4JA 1QWMA 1GGFA 4AULA 3E4YA 3P9PA 3PQ8A 3DY5A 4AUMA 1GWFA 1E93A 3PQ2A 3E4WA 1H7KA 4QOLA 1QQWA 4CABA 2CAHA 2A9EA 4BIMA 1DGHB 4ENSA 2XF2A 1P7YA 1P80A 1DGBA 1SI8A 4B7FA 1U5UA 3J7BA 1GWEA 4AUNA 8CATA 4ENQA 3PQ4A 4BFLA 1H6NA 2J2MA 3TTWA 3P9SA 4ENTA 1NM0A 3TTUA 1MQFA 3PQ7A 4QONA 3ZJ4A 5BV2P 4ENRA 4E37A 2XQ1A 4QOOA 4ENUA 3P9QA 4B2YA 1TH4A 5GKNA 1TH3A 2CAGA 1P81A 7CATA 1SY7A 3VU3A 4QOMA 4B7HA 4B31A 4ENWA 1GGJA 4QOPA 4AUEA 2ISAA 3RGPA 1TGUA 4BLCA 1DGHA 1A4EA 1GGHA 1IPHA 1QWSA 1GGKA 4QOQA 4ENPA
chains in the Genus database with same CATH topology
3TTVA 3P9RA 1QWLA 1QF7A 1M7SA 3ZJ5A 1GWHA 4B40A 3PQ3A 1GG9A 3PQ6A 4B5KA 4B7AA 1GGEA 2IUFA 1M85A 3HB6A 3PQ5A 3TTXA 3TTTA 1CF9A 2IQFA 4AJ9A 1P7ZA 4QORA 1HBZA 3EJ6A 4ENVA 1F4JA 1QWMA 1GGFA 4AULA 3P9PA 3PQ8A 3DY5A 4AUMA 1GWFA 1E93A 3PQ2A 1H7KA 4QOLA 4CABA 2CAHA 2A9EA 4BIMA 4ENSA 2XF2A 1P7YA 1P80A 1SI8A 1U5UA 1GWEA 4AUNA 4ENQA 3PQ4A 4BFLA 1H6NA 2J2MA 3TTWA 3P9SA 4ENTA 1NM0A 3TTUA 1MQFA 3PQ7A 4QONA 3ZJ4A 5BV2P 4ENRA 4E37A 2XQ1A 4QOOA 4ENUA 3P9QA 4B2YA 2CAGA 1P81A 1SY7A 3VU3A 4QOMA 4B31A 4ENWA 1GGJA 4QOPA 4AUEA 2ISAA 1A4EA 1GGHA 1IPHA 1QWSA 1GGKA 4QOQA 4ENPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TTV A;  3P9R A;  1QWL A;  1QF7 A;  1M7S A;  3ZJ5 A;  1GWH A;  4B40 A;  3PQ3 A;  1GG9 A;  3PQ6 A;  4B5K A;  4B7A A;  1GGE A;  2IUF A;  1M85 A;  3HB6 A;  3PQ5 A;  3TTX A;  3TTT A;  1CF9 A;  2IQF A;  4AJ9 A;  1P7Z A;  4QOR A;  1HBZ A;  3EJ6 A;  4ENV A;  1F4J A;  1QWM A;  1GGF A;  4AUL A;  3P9P A;  3PQ8 A;  3DY5 A;  4AUM A;  1GWF A;  1E93 A;  3PQ2 A;  1H7K A;  4QOL A;  4CAB A;  2CAH A;  2A9E A;  4BIM A;  4ENS A;  2XF2 A;  1P7Y A;  1P80 A;  1SI8 A;  1U5U A;  1GWE A;  4AUN A;  4ENQ A;  3PQ4 A;  4BFL A;  1H6N A;  2J2M A;  3TTW A;  3P9S A;  4ENT A;  1NM0 A;  3TTU A;  1MQF A;  3PQ7 A;  4QON A;  3ZJ4 A;  5BV2 P;  4ENR A;  4E37 A;  2XQ1 A;  4QOO A;  4ENU A;  3P9Q A;  4B2Y A;  2CAG A;  1P81 A;  1SY7 A;  3VU3 A;  4QOM A;  4B31 A;  4ENW A;  1GGJ A;  4QOP A;  4AUE A;  2ISA A;  1A4E A;  1GGH A;  1IPH A;  1QWS A;  1GGK A;  4QOQ A;  4ENP A; 
#chains in the Genus database with same CATH topology
 3TTV A;  3P9R A;  1QWL A;  1QF7 A;  1M7S A;  3RGS A;  3ZJ5 A;  1GWH A;  4B40 A;  3PQ3 A;  1GG9 A;  4B7G A;  3PQ6 A;  4B5K A;  4B7A A;  1GGE A;  2IUF A;  3NWL A;  1M85 A;  1DGG A;  3HB6 A;  3PQ5 A;  3TTX A;  1DGF A;  3TTT A;  1CF9 A;  2IQF A;  1TH2 A;  4AJ9 A;  1P7Z A;  4QOR A;  1HBZ A;  3EJ6 A;  3RE8 A;  4ENV A;  1F4J A;  1QWM A;  1GGF A;  4AUL A;  3E4Y A;  3P9P A;  3PQ8 A;  3DY5 A;  4AUM A;  1GWF A;  1E93 A;  3PQ2 A;  3E4W A;  1H7K A;  4QOL A;  1QQW A;  4CAB A;  2CAH A;  2A9E A;  4BIM A;  1DGH B;  4ENS A;  2XF2 A;  1P7Y A;  1P80 A;  1DGB A;  1SI8 A;  4B7F A;  1U5U A;  3J7B A;  1GWE A;  4AUN A;  8CAT A;  4ENQ A;  3PQ4 A;  4BFL A;  1H6N A;  2J2M A;  3TTW A;  3P9S A;  4ENT A;  1NM0 A;  3TTU A;  1MQF A;  3PQ7 A;  4QON A;  3ZJ4 A;  5BV2 P;  4ENR A;  4E37 A;  2XQ1 A;  4QOO A;  4ENU A;  3P9Q A;  4B2Y A;  1TH4 A;  5GKN A;  1TH3 A;  2CAG A;  1P81 A;  7CAT A;  1SY7 A;  3VU3 A;  4QOM A;  4B7H A;  4B31 A;  4ENW A;  1GGJ A;  4QOP A;  4AUE A;  2ISA A;  3RGP A;  1TGU A;  4BLC A;  1DGH A;  1A4E A;  1GGH A;  1IPH A;  1QWS A;  1GGK A;  4QOQ A;  4ENP A; 
#chains in the Genus database with same CATH homology
 3TTV A;  3P9R A;  1QWL A;  1QF7 A;  1M7S A;  3ZJ5 A;  1GWH A;  4B40 A;  3PQ3 A;  1GG9 A;  3PQ6 A;  4B5K A;  4B7A A;  1GGE A;  2IUF A;  1M85 A;  3HB6 A;  3PQ5 A;  3TTX A;  3TTT A;  1CF9 A;  2IQF A;  4AJ9 A;  1P7Z A;  4QOR A;  1HBZ A;  3EJ6 A;  4ENV A;  1F4J A;  1QWM A;  1GGF A;  4AUL A;  3P9P A;  3PQ8 A;  3DY5 A;  4AUM A;  1GWF A;  1E93 A;  3PQ2 A;  1H7K A;  4QOL A;  4CAB A;  2CAH A;  2A9E A;  4BIM A;  4ENS A;  2XF2 A;  1P7Y A;  1P80 A;  1SI8 A;  1U5U A;  1GWE A;  4AUN A;  4ENQ A;  3PQ4 A;  4BFL A;  1H6N A;  2J2M A;  3TTW A;  3P9S A;  4ENT A;  1NM0 A;  3TTU A;  1MQF A;  3PQ7 A;  4QON A;  3ZJ4 A;  5BV2 P;  4ENR A;  4E37 A;  2XQ1 A;  4QOO A;  4ENU A;  3P9Q A;  4B2Y A;  2CAG A;  1P81 A;  1SY7 A;  3VU3 A;  4QOM A;  4B31 A;  4ENW A;  1GGJ A;  4QOP A;  4AUE A;  2ISA A;  1A4E A;  1GGH A;  1IPH A;  1QWS A;  1GGK A;  4QOQ A;  4ENP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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