2AAYA

Epsp synthase liganded with shikimate and glyphosate
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
427
structure length
427
Chain Sequence
MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 3-phosphoshikimate 1-carboxyvinyltransferase
publication title Molecular basis for the glyphosate-insensitivity of the reaction of 5-enolpyruvylshikimate 3-phosphate synthase with shikimate.
pubmed doi rcsb
source organism Escherichia coli
total genus 158
structure length 427
sequence length 427
ec nomenclature ec 2.5.1.19: 3-phosphoshikimate 1-carboxyvinyltransferase.
pdb deposition date 2005-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 2aayA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 2aayA01
1EJCA 4E7CA 4E7DA 3FK0A 2Z2CA 1NAWA 3TR1A 3TI2A 2O0DA 1X8RA 2AA9A 3NVSA 2QFSA 3ISSA 3SWGA 2O0BA 3FJXA 2BJBA 3V5VA 4R7UA 4ZNDA 2QFTA 3RMTA 2YVWA 1RF4A 1MI4A 2O0EA 2QFQA 2PQ9A 1UAEA 3FJZA 3KR6A 3SWAA 1P89A 3SWIA 5BUFA 2O0XA 3SWEA 3ROIA 3SG1A 5BQ2A 2PQBA 5BS5A 2QFUA 3SWQA 3ZH3A 2GGDA 2O15A 4FQDA 3R38A 1YBGA 2GGAA 1Q36A 1DLGA 2O0ZA 3UPKA 2PQCA 3SU9A 3FK1A 4EGRA 2RL1A 3V4TA 4E7EA 4GFPA 3KQJA 1EYNA 1G6TA 2PQDA 1A2NA 4E7BA 3VCYA 3ZH4A 1RF6A 4E7FA 2RL2A 1P88A 1EJDA 2GG4A 1RYWA 4N3PA 3SPBA 4E7GA 3LTHA 2GG6A 3SLHA 1RF5A 2AAYA 3SWDA 1X8TA 1G6SA 4EIIA 5U4HA 3KQAA 1Q3GA
chains in the Genus database with same CATH superfamily
1EJCA 4CLQA 4E7CA 4E7DA 3FK0A 2Z2CA 1NAWA 3TR1A 3TI2A 2O0DA 1X8RA 2AA9A 3NVSA 2QFSA 3ISSA 3SWGA 2O0BA 4O8JA 3FJXA 2BJBA 3V5VA 4R7UA 4ZNDA 1QMHA 2QFTA 3RMTA 3TW3A 2YVWA 1RF4A 1MI4A 2O0EA 2QFQA 3PQVA 2PQ9A 1UAEA 3FJZA 3KR6A 3SWAA 1P89A 3SWIA 5BUFA 2O0XA 3SWEA 3TV1A 3ROIA 3SG1A 5BQ2A 2PQBA 5BS5A 2QFUA 3SWQA 3ZH3A 2GGDA 2O15A 4FQDA 3R38A 1YBGA 2GGAA 1Q36A 1DLGA 2O0ZA 3UPKA 2PQCA 3SU9A 3FK1A 4EGRA 2RL1A 3TUTA 3V4TA 4E7EA 4GFPA 3KQJA 1EYNA 1G6TA 2PQDA 1A2NA 4E7BA 3VCYA 3ZH4A 1RF6A 4E7FA 2RL2A 3TUXA 1P88A 1EJDA 3KGDA 2GG4A 1QMIA 1RYWA 4N3PA 3SPBA 4O89A 4E7GA 3LTHA 2GG6A 3SLHA 1RF5A 2AAYA 3SWDA 1X8TA 1G6SA 4EIIA 5U4HA 3KQAA 1Q3GA
chains in the Genus database with same CATH topology
1EJCA 4E7CA 4E7DA 3FK0A 2Z2CA 1NAWA 3TR1A 3TI2A 2O0DA 1X8RA 2AA9A 3NVSA 2QFSA 3ISSA 3SWGA 2O0BA 3FJXA 2BJBA 3V5VA 4R7UA 4ZNDA 2QFTA 3RMTA 2YVWA 1RF4A 1MI4A 2O0EA 2QFQA 2PQ9A 1UAEA 3FJZA 3KR6A 3SWAA 1P89A 3SWIA 5BUFA 2O0XA 3SWEA 3ROIA 3SG1A 5BQ2A 2PQBA 5BS5A 2QFUA 3SWQA 3ZH3A 2GGDA 2O15A 4FQDA 3R38A 1YBGA 2GGAA 1Q36A 1DLGA 2O0ZA 3UPKA 2PQCA 3SU9A 3FK1A 4EGRA 2RL1A 3V4TA 4E7EA 4GFPA 3KQJA 1EYNA 1G6TA 2PQDA 1A2NA 4E7BA 3VCYA 3ZH4A 1RF6A 4E7FA 2RL2A 1P88A 1EJDA 2GG4A 1RYWA 4N3PA 3SPBA 4E7GA 3LTHA 2GG6A 3SLHA 1RF5A 2AAYA 3SWDA 1X8TA 1G6SA 4EIIA 5U4HA 3KQAA 1Q3GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EJC A;  4E7C A;  4E7D A;  3FK0 A;  2Z2C A;  1NAW A;  3TR1 A;  3TI2 A;  2O0D A;  1X8R A;  2AA9 A;  3NVS A;  2QFS A;  3ISS A;  3SWG A;  2O0B A;  3FJX A;  2BJB A;  3V5V A;  4R7U A;  4ZND A;  2QFT A;  3RMT A;  2YVW A;  1RF4 A;  1MI4 A;  2O0E A;  2QFQ A;  2PQ9 A;  1UAE A;  3FJZ A;  3KR6 A;  3SWA A;  1P89 A;  3SWI A;  5BUF A;  2O0X A;  3SWE A;  3ROI A;  3SG1 A;  5BQ2 A;  2PQB A;  5BS5 A;  2QFU A;  3SWQ A;  3ZH3 A;  2GGD A;  2O15 A;  4FQD A;  3R38 A;  1YBG A;  2GGA A;  1Q36 A;  1DLG A;  2O0Z A;  3UPK A;  2PQC A;  3SU9 A;  3FK1 A;  4EGR A;  2RL1 A;  3V4T A;  4E7E A;  4GFP A;  3KQJ A;  1EYN A;  1G6T A;  2PQD A;  1A2N A;  4E7B A;  3VCY A;  3ZH4 A;  1RF6 A;  4E7F A;  2RL2 A;  1P88 A;  1EJD A;  2GG4 A;  1RYW A;  4N3P A;  3SPB A;  4E7G A;  3LTH A;  2GG6 A;  3SLH A;  1RF5 A;  2AAY A;  3SWD A;  1X8T A;  1G6S A;  4EII A;  5U4H A;  3KQA A;  1Q3G A; 
#chains in the Genus database with same CATH topology
 1EJC A;  4CLQ A;  4E7C A;  4E7D A;  3FK0 A;  2Z2C A;  1NAW A;  3TR1 A;  3TI2 A;  2O0D A;  1X8R A;  2AA9 A;  3NVS A;  2QFS A;  3ISS A;  3SWG A;  2O0B A;  4O8J A;  3FJX A;  2BJB A;  3V5V A;  4R7U A;  4ZND A;  1QMH A;  2QFT A;  3RMT A;  3TW3 A;  2YVW A;  1RF4 A;  1MI4 A;  2O0E A;  2QFQ A;  3PQV A;  2PQ9 A;  1UAE A;  3FJZ A;  3KR6 A;  3SWA A;  1P89 A;  3SWI A;  5BUF A;  2O0X A;  3SWE A;  3TV1 A;  3ROI A;  3SG1 A;  5BQ2 A;  2PQB A;  5BS5 A;  2QFU A;  3SWQ A;  3ZH3 A;  2GGD A;  2O15 A;  4FQD A;  3R38 A;  1YBG A;  2GGA A;  1Q36 A;  1DLG A;  2O0Z A;  3UPK A;  2PQC A;  3SU9 A;  3FK1 A;  4EGR A;  2RL1 A;  3TUT A;  3V4T A;  4E7E A;  4GFP A;  3KQJ A;  1EYN A;  1G6T A;  2PQD A;  1A2N A;  4E7B A;  3VCY A;  3ZH4 A;  1RF6 A;  4E7F A;  2RL2 A;  3TUX A;  1P88 A;  1EJD A;  3KGD A;  2GG4 A;  1QMI A;  1RYW A;  4N3P A;  3SPB A;  4O89 A;  4E7G A;  3LTH A;  2GG6 A;  3SLH A;  1RF5 A;  2AAY A;  3SWD A;  1X8T A;  1G6S A;  4EII A;  5U4H A;  3KQA A;  1Q3G A; 
#chains in the Genus database with same CATH homology
 1EJC A;  4E7C A;  4E7D A;  3FK0 A;  2Z2C A;  1NAW A;  3TR1 A;  3TI2 A;  2O0D A;  1X8R A;  2AA9 A;  3NVS A;  2QFS A;  3ISS A;  3SWG A;  2O0B A;  3FJX A;  2BJB A;  3V5V A;  4R7U A;  4ZND A;  2QFT A;  3RMT A;  2YVW A;  1RF4 A;  1MI4 A;  2O0E A;  2QFQ A;  2PQ9 A;  1UAE A;  3FJZ A;  3KR6 A;  3SWA A;  1P89 A;  3SWI A;  5BUF A;  2O0X A;  3SWE A;  3ROI A;  3SG1 A;  5BQ2 A;  2PQB A;  5BS5 A;  2QFU A;  3SWQ A;  3ZH3 A;  2GGD A;  2O15 A;  4FQD A;  3R38 A;  1YBG A;  2GGA A;  1Q36 A;  1DLG A;  2O0Z A;  3UPK A;  2PQC A;  3SU9 A;  3FK1 A;  4EGR A;  2RL1 A;  3V4T A;  4E7E A;  4GFP A;  3KQJ A;  1EYN A;  1G6T A;  2PQD A;  1A2N A;  4E7B A;  3VCY A;  3ZH4 A;  1RF6 A;  4E7F A;  2RL2 A;  1P88 A;  1EJD A;  2GG4 A;  1RYW A;  4N3P A;  3SPB A;  4E7G A;  3LTH A;  2GG6 A;  3SLH A;  1RF5 A;  2AAY A;  3SWD A;  1X8T A;  1G6S A;  4EII A;  5U4H A;  3KQA A;  1Q3G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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