2AB4A

Dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase
Total Genus 81
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
308
structure length
300
Chain Sequence
MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVFWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAPEEIENRIIPLEKCLEWLPRVVVHQESTKMILNGSQIHLEMLKEWDGFKKGEVVRVFNEEGRLLALAEAERNSSFRQERVLTLRKVFQT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Isomerase/rna
molecule keywords 5'-R(*CP*CP*AP*CP*GP*GP*UP*(FHU)P*CP*GP*AP*AP*UP*CP*CP*GP*UP
publication title Dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase.
pubmed doi rcsb
source organism Thermotoga maritima
total genus 81
structure length 300
sequence length 308
ec nomenclature ec 5.4.99.25: tRNA pseudouridine(55) synthase.
pdb deposition date 2005-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01472 PUA PUA domain
A PF01509 TruB_N TruB family pseudouridylate synthase (N terminal domain)
A PF16198 TruB_C_2 tRNA pseudouridylate synthase B C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.10 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 PUA domain 2ab4A02
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 2ab4A01
1KSVA 2J5TA 2AUSA 2HVYA 4DMGA 4Q1TA 3LWPA 2AB4A 3HAXA 1WXXA 2CX0A 3HJWA 2Q07A 1V9FA 1ZL3A 3DH3A 1R3EA 1T5YA 1KSLA 3C0KA 3U28A 3HJYA 3LDFA 3MQKA 1J2BA 1XPIA 2I82A 2ISTA 3LWOA 3LWQA 2J5VA 1ZS7A 2AS0A 1PRZA 2EY4A 1QYUA 1ZE1A 2B78A 3UAIA 1R3FA 2CWWA 1V9KA 2RFKA 1IT7A 2P38A 1ZE2A 1Q7HA 3LWVA 1IT8A 1K8WA 1IQ8A 1SGVA 3VSEA 4LGTA 3D79A 1WXWA 2CX1A 2APOA 4LABA 1SQWA 1KSKA 3LWRA
chains in the Genus database with same CATH superfamily
3LJCA 4DMGA 4Q1TA 2AB4A 3HAXA 1V9FA 1ZL3A 2E5OA 1R3EA 1T5YA 3U28A 3C0KA 1KSLA 3HJYA 1S04A 2I82A 1ZS7A 1XNEA 1PRZA 1QYUA 1IT7A 4CI2B 1Q7HA 1IQ8A 1SZWA 3M4XA 3ZV0C 3M6UA 2CX1A 2ANEA 1KSKA 3LWRA 2AUSA 3M6XA 1WXXA 2CX0A 2Q07A 3M65A 2DP9A 3MQKA 1J2BA 1XPIA 1TE7A 2ISTA 3LWOA 3M6WA 3LWQA 2AS0A 1WK2A 1ZE1A 1SB7A 1R3FA 2CWWA 2RFKA 3LWVA 1IT8A 1Z2ZA 3IUWA 1WXWA 4LABA 2J5TA 3M6VA 1UOYA 3DH3A 2EY4A 3UAIA 1V9KA 4TZ4C 1ZBOA 2KKUA 1SGVA 3VSEA 4LGTA 2APOA 4CI1B 1KSVA 2HVYA 2FRXA 3HJWA 4CI3B 2Z0TA 3LDFA 2J5VA 1SI7A 2B78A 2P38A 1ZE2A 1K8WA 3D79A 1SQWA 3LWPA
chains in the Genus database with same CATH topology
1KSVA 2J5TA 2AUSA 2HVYA 4DMGA 4Q1TA 3LWPA 2AB4A 3HAXA 1WXXA 2CX0A 3HJWA 2Q07A 1V9FA 1ZL3A 3DH3A 1R3EA 1T5YA 1KSLA 3C0KA 3U28A 3HJYA 3LDFA 3MQKA 1J2BA 1XPIA 2I82A 2ISTA 3LWOA 3LWQA 2J5VA 1ZS7A 1SI7A 2AS0A 1PRZA 2EY4A 1QYUA 1ZE1A 2B78A 3UAIA 1R3FA 2CWWA 1SB7A 1V9KA 1IT7A 2P38A 1ZE2A 1Q7HA 3LWVA 1IT8A 1K8WA 1IQ8A 2RFKA 1Z2ZA 1SGVA 3VSEA 1SZWA 3D79A 4LGTA 1WXWA 2CX1A 2APOA 4LABA 1SQWA 1KSKA 3LWRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KSV A;  2J5T A;  2AUS A;  2HVY A;  4DMG A;  4Q1T A;  3LWP A;  2AB4 A;  3HAX A;  1WXX A;  2CX0 A;  3HJW A;  2Q07 A;  1V9F A;  1ZL3 A;  3DH3 A;  1R3E A;  1T5Y A;  1KSL A;  3C0K A;  3U28 A;  3HJY A;  3LDF A;  3MQK A;  1J2B A;  1XPI A;  2I82 A;  2IST A;  3LWO A;  3LWQ A;  2J5V A;  1ZS7 A;  2AS0 A;  1PRZ A;  2EY4 A;  1QYU A;  1ZE1 A;  2B78 A;  3UAI A;  1R3F A;  2CWW A;  1V9K A;  2RFK A;  1IT7 A;  2P38 A;  1ZE2 A;  1Q7H A;  3LWV A;  1IT8 A;  1K8W A;  1IQ8 A;  1SGV A;  3VSE A;  4LGT A;  3D79 A;  1WXW A;  2CX1 A;  2APO A;  4LAB A;  1SQW A;  1KSK A;  3LWR A; 
#chains in the Genus database with same CATH topology
 3LJC A;  4DMG A;  4Q1T A;  2AB4 A;  3HAX A;  1V9F A;  1ZL3 A;  2E5O A;  1R3E A;  1T5Y A;  3U28 A;  3C0K A;  1KSL A;  3HJY A;  1S04 A;  2I82 A;  1ZS7 A;  1XNE A;  1PRZ A;  1QYU A;  1IT7 A;  4CI2 B;  1Q7H A;  1IQ8 A;  1SZW A;  3M4X A;  3ZV0 C;  3M6U A;  2CX1 A;  2ANE A;  1KSK A;  3LWR A;  2AUS A;  3M6X A;  1WXX A;  2CX0 A;  2Q07 A;  3M65 A;  2DP9 A;  3MQK A;  1J2B A;  1XPI A;  1TE7 A;  2IST A;  3LWO A;  3M6W A;  3LWQ A;  2AS0 A;  1WK2 A;  1ZE1 A;  1SB7 A;  1R3F A;  2CWW A;  2RFK A;  3LWV A;  1IT8 A;  1Z2Z A;  3IUW A;  1WXW A;  4LAB A;  2J5T A;  3M6V A;  1UOY A;  3DH3 A;  2EY4 A;  3UAI A;  1V9K A;  4TZ4 C;  1ZBO A;  2KKU A;  1SGV A;  3VSE A;  4LGT A;  2APO A;  4CI1 B;  1KSV A;  2HVY A;  2FRX A;  3HJW A;  4CI3 B;  2Z0T A;  3LDF A;  2J5V A;  1SI7 A;  2B78 A;  2P38 A;  1ZE2 A;  1K8W A;  3D79 A;  1SQW A;  3LWP A; 
#chains in the Genus database with same CATH homology
 1KSV A;  2J5T A;  2AUS A;  2HVY A;  4DMG A;  4Q1T A;  3LWP A;  2AB4 A;  3HAX A;  1WXX A;  2CX0 A;  3HJW A;  2Q07 A;  1V9F A;  1ZL3 A;  3DH3 A;  1R3E A;  1T5Y A;  1KSL A;  3C0K A;  3U28 A;  3HJY A;  3LDF A;  3MQK A;  1J2B A;  1XPI A;  2I82 A;  2IST A;  3LWO A;  3LWQ A;  2J5V A;  1ZS7 A;  1SI7 A;  2AS0 A;  1PRZ A;  2EY4 A;  1QYU A;  1ZE1 A;  2B78 A;  3UAI A;  1R3F A;  2CWW A;  1SB7 A;  1V9K A;  1IT7 A;  2P38 A;  1ZE2 A;  1Q7H A;  3LWV A;  1IT8 A;  1K8W A;  1IQ8 A;  2RFK A;  1Z2Z A;  1SGV A;  3VSE A;  1SZW A;  3D79 A;  4LGT A;  1WXW A;  2CX1 A;  2APO A;  4LAB A;  1SQW A;  1KSK A;  3LWR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...